assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900477925.1_46801_C01	LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	1	803619-803699	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Orphan	TTAGCAATTTCTTCGAAATTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	NA|251aa|up_1|LS483463.1_800498_801251_-,NA|102aa|down_0|LS483463.1_803775_804081_-,NA|102aa|down_1|LS483463.1_804114_804420_-,NA|46aa|down_7|LS483463.1_808743_808881_-,NA|76aa|down_9|LS483463.1_810056_810284_-	NA|395aa|up_9|LS483463.1_790955_792140_+	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|580aa|up_8|LS483463.1_792208_793948_+	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|293aa|up_7|LS483463.1_793995_794874_-	cd08451, PBP2_BudR, The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold	NA|281aa|up_6|LS483463.1_794965_795808_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|176aa|up_5|LS483463.1_795831_796359_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|442aa|up_4|LS483463.1_796383_797709_+	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|127aa|up_3|LS483463.1_797773_798154_+	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|319aa|up_2|LS483463.1_798830_799787_+	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|251aa|up_1|LS483463.1_800498_801251_-	NA	NA|579aa|up_0|LS483463.1_801259_802996_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|102aa|down_0|LS483463.1_803775_804081_-	NA	NA|102aa|down_1|LS483463.1_804114_804420_-	NA	NA|133aa|down_2|LS483463.1_804455_804854_-	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|342aa|down_3|LS483463.1_804850_805876_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|417aa|down_4|LS483463.1_805865_807116_-	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS)	NA|302aa|down_5|LS483463.1_807162_808068_-	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9	NA|228aa|down_6|LS483463.1_808067_808751_-	pfam04335, VirB8, VirB8 protein	NA|46aa|down_7|LS483463.1_808743_808881_-	NA	NA|358aa|down_8|LS483463.1_808972_810046_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|76aa|down_9|LS483463.1_810056_810284_-	NA
GCA_900477925.1_46801_C01	LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	2	1003296-1003446	2	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	2	2	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	NA,NA	NA|381aa|up_9|LS483463.1_989093_990236_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|LS483463.1_990279_993036_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|LS483463.1_993093_994389_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|LS483463.1_994440_996675_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|96aa|up_5|LS483463.1_996828_997116_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|LS483463.1_997081_997378_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|LS483463.1_998145_998946_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|LS483463.1_999173_1000811_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LS483463.1_1000893_1002192_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LS483463.1_1002327_1002999_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|LS483463.1_1003543_1004341_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LS483463.1_1004428_1004791_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LS483463.1_1005226_1007026_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LS483463.1_1007025_1008738_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LS483463.1_1008813_1009548_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|LS483463.1_1009635_1010589_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|LS483463.1_1011032_1013696_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|LS483463.1_1013707_1015264_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|down_8|LS483463.1_1015260_1015809_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|LS483463.1_1015822_1016881_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCA_900477925.1_46801_C01	LS483463	Salmonella enterica subsp. enterica serovar Give strain NCTC5778 genome assembly, chromosome: 1	3	1019577-1020032	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,7,7	7	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT	NA,NA	NA|245aa|up_9|LS483463.1_1008813_1009548_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|LS483463.1_1009635_1010589_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|LS483463.1_1011032_1013696_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|LS483463.1_1013707_1015264_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|up_5|LS483463.1_1015260_1015809_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|LS483463.1_1015822_1016881_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LS483463.1_1016891_1017638_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LS483463.1_1017619_1018270_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|LS483463.1_1018266_1019187_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LS483463.1_1019186_1019480_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LS483463.1_1020046_1021093_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483463.1_1021343_1022252_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483463.1_1022261_1023701_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483463.1_1023687_1024293_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483463.1_1024343_1024667_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483463.1_1024857_1025169_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LS483463.1_1025187_1025898_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LS483463.1_1025897_1026377_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483463.1_1026373_1027423_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LS483463.1_1027403_1028165_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
