The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 2
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	671465	712741	5118272	plate,capsid,terminase,integrase,tail,tRNA	Cronobacter_phage(65.79%)	48	668480:668495	699039:699054
668480:668495	attL	TCCGTTGACGATATTG	NA	NA	NA	NA
SQH92063.1|671465_671798_+|tRNA	methionyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQH92064.1|671892_673272_-	putrescine--2-oxoglutarate aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.5	1.4e-31
SQH92065.1|673701_675222_+	aerotaxis receptor protein	NA	A0A1B0V854	Salmonella_phage	48.5	4.5e-34
SQH92066.1|675614_677183_+	Methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	2.2e-12
SQH92067.1|677179_677824_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH92068.1|678058_678826_+	siderophore-interacting protein	NA	NA	NA	NA	NA
SQH92069.1|679286_680324_-|integrase	Phage integrase	integrase	F1BUS9	Erwinia_phage	65.6	7.1e-124
SQH92070.1|680310_681204_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92071.1|681232_681811_-	repressor protein	NA	A0A218M4J1	Erwinia_phage	39.5	2.0e-27
SQH92072.1|681930_682152_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92073.1|682182_682686_+	phage protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
SQH92074.1|682695_682923_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92075.1|682912_683338_+	Uncharacterised protein	NA	F1BUN5	Cronobacter_phage	50.4	7.6e-24
SQH92076.1|683337_683739_+	Uncharacterised protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
SQH92077.1|683806_684061_+	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA	NA
SQH92078.1|684051_684648_+	exonuclease	NA	A0A1S6L012	Salmonella_phage	72.3	3.8e-74
SQH92079.1|684644_684974_+	gp91	NA	Q2P9X4	Enterobacteria_phage	45.2	3.0e-12
SQH92080.1|684963_685824_+	putative phage gene	NA	F1BUN1	Cronobacter_phage	82.0	9.3e-130
SQH92081.1|685820_687842_+	Phage replication protein	NA	F1BUM9	Cronobacter_phage	74.8	4.2e-298
SQH92082.1|687961_688168_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92083.1|688141_688411_-	zinc-finger protein	NA	F1BUM8	Cronobacter_phage	94.3	5.1e-42
SQH92084.1|688461_689523_-	Membrane protein	NA	F1BUM7	Cronobacter_phage	76.8	4.3e-161
SQH92085.1|689519_691295_-|terminase	Phage terminase ATPase subunit	terminase	F1BUM5	Cronobacter_phage	82.9	6.3e-290
SQH92086.1|691455_692256_+|capsid	putative capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	55.1	1.1e-76
SQH92087.1|692317_693340_+|capsid	Phage major capsid protein	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
SQH92088.1|693343_694048_+|terminase	phage terminase subunit	terminase	F1BUM0	Cronobacter_phage	67.4	1.0e-86
SQH92089.1|694051_694246_+	Uncharacterised protein	NA	Q8W634	Enterobacteria_phage	58.6	3.3e-11
SQH92090.1|694291_694795_+	putative phage gene	NA	F1BUL8	Cronobacter_phage	82.7	2.3e-64
SQH92091.1|694791_695298_+	putative phage gene	NA	F1BUL7	Cronobacter_phage	69.8	5.2e-64
SQH92092.1|695294_696002_+	Phage virion morphogenesis protein	NA	F1BUL6	Cronobacter_phage	76.1	7.5e-101
SQH92093.1|695998_697126_+	Topoisomerase IA	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
SQH92094.1|697122_697578_+	phage protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
SQH92095.1|697587_697881_+	Holin	NA	C7BGD7	Burkholderia_phage	46.2	1.3e-14
SQH92096.1|697877_698219_+	hypothetical phage-related protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
SQH92097.1|698218_698551_+	putative phage-related protein	NA	F1BUL2	Cronobacter_phage	70.9	3.7e-34
SQH92098.1|698697_698955_+	putative phage gene	NA	A5X9I7	Aeromonas_virus	62.2	4.7e-21
SQH92099.1|699142_701113_+|tail	Phage-related tail protein	tail	F1BUK9	Cronobacter_phage	68.8	7.1e-266
699039:699054	attR	TCCGTTGACGATATTG	NA	NA	NA	NA
SQH92100.1|701109_701439_+	phage protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
SQH92101.1|701435_702620_+|plate	Phage baseplate	plate	F1BUK6	Cronobacter_phage	78.1	6.7e-179
SQH92102.1|702612_703200_+|tail	Bacteriophage P2-related tail formation protein	tail	F1BUK5	Cronobacter_phage	82.1	4.9e-90
SQH92103.1|703209_705447_+	gp19	NA	Q8HAB4	Salmonella_phage	85.5	1.1e-217
SQH92104.1|705446_706022_+|tail	putative phage tail protein	tail	Q8HAB3	Salmonella_phage	96.3	4.5e-104
SQH92105.1|706011_706737_+	phage protein	NA	F1BUK1	Cronobacter_phage	56.8	1.3e-68
SQH92106.1|706708_707254_+	phage protein	NA	F1BUJ9	Cronobacter_phage	71.4	3.5e-58
SQH92107.1|707253_708957_+	phage protein	NA	F1BUJ7	Cronobacter_phage	81.1	1.3e-223
SQH92108.1|709545_709707_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92109.1|710129_710636_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
SQH92110.1|710758_712741_-	RNA polymerase sigma-70 factor	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
>prophage 3
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	1396719	1431553	5118272	tail,head	uncultured_Caudovirales_phage(34.62%)	36	NA	NA
SQH92756.1|1396719_1398111_-	phage-related DNA helicase	NA	Q3LZN8	Bacteriophage	73.7	5.4e-212
SQH92757.1|1399048_1399318_-	putative phage related protein	NA	B6SD64	Bacteriophage	65.9	1.8e-26
SQH92758.1|1399320_1399509_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92759.1|1399509_1399722_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92760.1|1399732_1399948_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92761.1|1399944_1400247_-	Uncharacterised protein	NA	A0A0B4SK56	Proteus_phage	32.0	4.1e-08
SQH92762.1|1400252_1402319_-	bifunctional 3'-5' exonuclease/DNA polymerase	NA	Q775A3	Bordetella_phage	68.4	1.2e-276
SQH92763.1|1402394_1403231_-	putative lipoprotein	NA	V5KSK5	Escherichia_phage	73.3	4.7e-94
SQH92764.1|1403227_1403419_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92765.1|1403463_1404012_-	Protein of uncharacterised function (DUF2815)	NA	Q775A5	Bordetella_phage	66.5	3.8e-68
SQH92766.1|1404027_1405332_-	Protein of uncharacterised function (DUF2800)	NA	B6SCX9	Bacteriophage	59.2	1.1e-142
SQH92767.1|1405334_1406237_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92768.1|1406233_1406383_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92769.1|1406495_1407020_-	Mobile element protein	NA	C9EH97	Sodalis_phage	48.8	1.9e-40
SQH92770.1|1407451_1408081_-	DNA-binding protein	NA	A0A1I9KG86	Aeromonas_phage	40.9	7.0e-34
SQH92771.1|1408191_1408413_+	regulatory protein Cro (antirepressor)	NA	Q716D6	Shigella_phage	50.0	5.1e-08
SQH92772.1|1408416_1410585_+	Predicted P-loop ATPase and inactivated derivatives	NA	B6SCY1	Bacteriophage	72.4	4.5e-173
SQH92773.1|1411445_1411826_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92774.1|1411837_1412068_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92775.1|1412071_1413694_+|head,tail	Bacteriophage head to tail connecting protein	head,tail	A0A2H4J3N6	uncultured_Caudovirales_phage	57.3	8.6e-169
SQH92776.1|1413693_1413924_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92777.1|1413910_1414747_+	Uncharacterised protein	NA	A0A2H4JEQ5	uncultured_Caudovirales_phage	39.1	9.3e-42
SQH92778.1|1415117_1416029_+	Uncharacterised protein	NA	A0A2H4JC66	uncultured_Caudovirales_phage	38.3	5.4e-43
SQH92779.1|1416087_1416651_+	Uncharacterised protein	NA	A0A2H4JID6	uncultured_Caudovirales_phage	51.3	1.1e-49
SQH92780.1|1416652_1418641_+	Uncharacterised protein	NA	A0A2H4J6H2	uncultured_Caudovirales_phage	48.7	2.4e-189
SQH92781.1|1418642_1419092_+	Acetyltransferase (GNAT) family	NA	A0A2H4J9Z5	uncultured_Caudovirales_phage	43.0	5.2e-23
SQH92782.1|1419094_1419568_+	Uncharacterised protein	NA	A0A2H4J679	uncultured_Caudovirales_phage	48.1	1.7e-08
SQH92783.1|1419564_1422273_+	lytic transglycosylase	NA	G9L6D3	Escherichia_phage	66.5	0.0e+00
SQH92784.1|1422272_1425164_+	Uncharacterised protein	NA	G9L6D4	Escherichia_phage	76.6	0.0e+00
SQH92785.1|1425210_1425702_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92786.1|1425766_1426108_+	Uncharacterised protein	NA	A0A2H4J7H0	uncultured_Caudovirales_phage	50.9	9.1e-20
SQH92787.1|1426104_1427715_+	Uncharacterised protein	NA	A0A2H4JCA3	uncultured_Caudovirales_phage	69.0	8.2e-220
SQH92788.1|1427734_1430140_+	Colanic acid biosynthesis protein wcaM	NA	A0A140G607	Enterobacteria_phage	46.6	6.6e-165
SQH92789.1|1430444_1430675_+	Lysis protein S	NA	A5LH82	Enterobacteria_phage	69.6	3.6e-20
SQH92790.1|1430655_1431189_+	Phage endolysin R	NA	K7PLY1	Enterobacteria_phage	88.2	3.9e-86
SQH92791.1|1431178_1431553_+	Uncharacterised protein	NA	R9TPM9	Aeromonas_phage	46.2	1.1e-15
>prophage 4
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	1625657	1687026	5118272	coat,holin,protease,portal,terminase,lysis,tail	Salmonella_phage(60.94%)	81	NA	NA
SQH92952.1|1625657_1626698_+|protease	metalloprotease	protease	NA	NA	NA	NA
SQH92953.1|1626719_1629215_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA	NA
SQH92954.1|1629322_1630177_-	Putative HTH-type transcriptional regulator ypdC	NA	NA	NA	NA	NA
SQH92955.1|1630763_1632002_+	aminotransferase	NA	NA	NA	NA	NA
SQH92956.1|1632524_1633445_-	Protein Ddg	NA	A0A1W6JP29	Morganella_phage	53.5	5.4e-75
SQH92957.1|1633716_1633833_+	transporter	NA	NA	NA	NA	NA
SQH92958.1|1633990_1634233_+	Protein of uncharacterised function (DUF2545)	NA	NA	NA	NA	NA
SQH92959.1|1634307_1635699_-	phosphoglycerate transporter	NA	NA	NA	NA	NA
SQH92960.1|1636053_1637328_+	phosphoglycerate transport: protein for signal transmission	NA	NA	NA	NA	NA
SQH92961.1|1637324_1639331_+	histidine kinase	NA	NA	NA	NA	NA
SQH92962.1|1639317_1640568_+	Nitrogen assimilation regulatory protein	NA	NA	NA	NA	NA
SQH92963.1|1640700_1640796_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92964.1|1640835_1641774_+|protease	outer membrane protease	protease	NA	NA	NA	NA
SQH92965.1|1642033_1642237_-	Gene 18 protein	NA	C6ZR24	Salmonella_phage	97.0	8.0e-32
SQH92966.1|1642205_1642331_-	HTH Phage	NA	NA	NA	NA	NA
SQH92967.1|1642333_1642678_-	Uncharacterised protein	NA	K7PJY7	Enterobacterial_phage	98.2	7.6e-59
SQH92968.1|1642750_1643548_-	Eaa protein	NA	M9NZE4	Enterobacteria_phage	50.5	2.6e-41
SQH92969.1|1643544_1643898_-	bacteriophage protein	NA	Q8HAA6	Salmonella_phage	63.0	7.4e-33
SQH92970.1|1643894_1644155_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92971.1|1644151_1645012_-	DNA modification methylase	NA	Q5QF26	Pseudomonas_virus	50.2	1.2e-68
SQH92972.1|1645008_1645239_-	phage protein	NA	Q8HAA4	Salmonella_phage	92.1	5.0e-30
SQH92973.1|1645235_1645883_-	Uncharacterised protein	NA	M1F3E2	Salmonella_phage	60.5	1.9e-66
SQH92974.1|1645879_1646470_-	Eae protein	NA	Q5G8U6	Enterobacteria_phage	68.4	6.1e-64
SQH92975.1|1646466_1646637_-	prophage protein	NA	I6S642	Salmonella_phage	96.4	3.3e-23
SQH92976.1|1646647_1646941_-	anti-RecBCD protein 2	NA	A0A1V0E5L7	Salmonella_phage	100.0	5.5e-50
SQH92977.1|1646956_1647505_-	endodeoxyribonuclease	NA	C6ZR35	Salmonella_phage	100.0	2.1e-106
SQH92978.1|1647513_1648020_-	ssDNA-binding protein controls activity of RecBCD nuclease	NA	C6ZR36	Salmonella_phage	100.0	1.0e-91
SQH92979.1|1648020_1648728_-	recombinase	NA	E7C9Q0	Salmonella_phage	97.9	7.6e-138
SQH92980.1|1648921_1649035_-	Bacteriophage lambda Kil protein	NA	C6ZR39	Salmonella_phage	100.0	7.8e-13
SQH92981.1|1649027_1649174_-	regulatory protein	NA	E7C9Q3	Salmonella_phage	100.0	1.3e-20
SQH92982.1|1649393_1649864_-	Uncharacterised protein	NA	A0A1I9LJN4	Stx_converting_phage	98.7	9.1e-87
SQH92983.1|1649917_1650124_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH92984.1|1650133_1650469_-	bacteriophage ST64T protein 24	NA	Q5G8T5	Enterobacteria_phage	86.0	3.2e-46
SQH92985.1|1650823_1651528_-	LexA repressor	NA	Q8HAG7	Salmonella_phage	98.7	1.3e-132
SQH92986.1|1651604_1651820_+	Uncharacterized HTH-type transcriptional regulator AF_2414	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
SQH92987.1|1651930_1652212_+	regulatory protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
SQH92988.1|1652246_1652393_+	Protein of uncharacterised function (DUF2740)	NA	A0A0M4S617	Salmonella_phage	100.0	1.9e-19
SQH92989.1|1652385_1652568_+|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	NA	NA	NA	NA
SQH92990.1|1652551_1653379_+	replication of DNA	NA	Q76H52	Enterobacteria_phage	95.9	5.8e-145
SQH92991.1|1653375_1654752_+	DNA helicase	NA	A0A075B8G2	Enterobacteria_phage	99.3	2.8e-253
SQH92992.1|1654824_1655031_+	membrane protein	NA	I6RSI5	Salmonella_phage	100.0	1.1e-31
SQH92993.1|1655045_1655198_+	Uncharacterised protein	NA	A0A2H4FWM4	Salmonella_phage	100.0	6.8e-20
SQH92994.1|1655209_1655530_+	Uncharacterised protein	NA	I6R992	Salmonella_phage	59.4	1.4e-22
SQH92995.1|1655533_1655740_+	Uncharacterised protein	NA	I1TEG6	Salmonella_phage	98.5	2.7e-35
SQH92996.1|1655794_1656019_+	restriction alleviation and modification protein	NA	NA	NA	NA	NA
SQH92997.1|1655975_1656422_+	prophage protein	NA	A0A1R3Y605	Salmonella_virus	98.0	6.6e-79
SQH92998.1|1656891_1657173_+	Protein of uncharacterised function (DUF1364)	NA	A0A0M3ULJ7	Salmonella_phage	98.9	4.2e-47
SQH92999.1|1657169_1657565_+	endodeoxyribonuclease RUS	NA	A0A0M4REJ2	Salmonella_phage	96.9	1.1e-69
SQH93000.1|1657561_1657765_+	protein ninH	NA	A0A1V0E5I5	Salmonella_phage	98.5	9.4e-33
SQH93001.1|1657745_1657925_+	protein Niprotein NZ	NA	A0A1V0E5I7	Salmonella_phage	96.6	7.8e-23
SQH93002.1|1657921_1658695_+	antitermination protein	NA	Q76H66	Enterobacteria_phage	96.9	8.4e-130
SQH93003.1|1659118_1659445_+|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
SQH93004.1|1659428_1659866_+	phage lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	8.2e-74
SQH93005.1|1659862_1660333_+|lysis	bacteriophage lysis protein	lysis	H6WRZ5	Salmonella_phage	86.6	4.5e-62
SQH93006.1|1660549_1661080_+	phage protein	NA	A0A2H4FQV0	Salmonella_phage	99.4	5.6e-93
SQH93007.1|1661336_1661579_+	Orf80	NA	A0A0M4R322	Salmonella_phage	100.0	7.5e-37
SQH93008.1|1661582_1661972_+	Uncharacterised protein	NA	Q76H27	Enterobacteria_phage	97.7	3.6e-73
SQH93009.1|1661971_1662478_+	Uncharacterised protein	NA	Q76H26	Enterobacteria_phage	64.3	4.7e-49
SQH93010.1|1662483_1662972_+|terminase	terminase small subunit	terminase	A8CGG1	Salmonella_phage	100.0	2.9e-88
SQH93011.1|1662949_1664449_+|terminase	putative terminase large subunit	terminase	A0A192Y824	Salmonella_phage	99.4	5.3e-306
SQH93012.1|1664452_1664953_-	endonuclease	NA	A0A0M4R2Z1	Salmonella_phage	100.0	2.5e-95
SQH93013.1|1665001_1667179_+|portal	portal protein	portal	A0A0M4RCZ3	Salmonella_phage	98.3	0.0e+00
SQH93014.1|1667192_1668104_+	scaffolding protein	NA	A0A192Y6T4	Salmonella_phage	100.0	4.9e-161
SQH93015.1|1668103_1669396_+|coat	coat protein	coat	C6ZR10	Salmonella_phage	99.5	7.2e-243
SQH93016.1|1669436_1669997_+	prophage protein	NA	I6S1J7	Salmonella_phage	95.7	7.0e-102
SQH93017.1|1669980_1670481_+	Gp4	NA	I6RSF6	Salmonella_phage	96.4	3.7e-86
SQH93018.1|1670440_1671859_+	DNA stabilization protein	NA	I1TEJ1	Salmonella_phage	97.0	1.2e-270
SQH93019.1|1671862_1672501_+	packaged DNA stabilization protein gp26	NA	A8CGD2	Salmonella_phage	95.8	8.0e-86
SQH93020.1|1672500_1672980_+	Protein of uncharacterised function (DUF2824)	NA	Q2A0B3	Sodalis_phage	73.4	1.4e-63
SQH93021.1|1672954_1673632_+	putative DNA transfer protein	NA	G5DA80	Enterobacteria_phage	68.2	9.8e-58
SQH93022.1|1673641_1674982_+	protein 12	NA	A0A0M5M1J8	Salmonella_phage	73.8	5.3e-164
SQH93023.1|1674966_1677111_+	Uncharacterised protein	NA	A0A0A0P1R1	Enterobacteria_phage	28.4	2.1e-45
SQH93024.1|1677549_1677864_-	regulatory protein	NA	H6WRU6	Salmonella_phage	62.4	8.9e-30
SQH93025.1|1677972_1678134_+	Uncharacterised protein	NA	A0A077KAX5	Edwardsiella_phage	96.2	7.7e-22
SQH93026.1|1678123_1678990_+	Putative cytoplasmic protein	NA	B6SD57	Bacteriophage	52.5	7.8e-68
SQH93027.1|1679062_1679809_+	phage-like protein	NA	A0A0P0ZDC0	Stx2-converting_phage	57.1	2.0e-64
SQH93028.1|1679865_1680114_-	Mnt	NA	E7C9U8	Salmonella_phage	84.2	7.3e-27
SQH93029.1|1680249_1682451_+|tail	Bifunctional tail protein Includes: Tailspike-protein; TSP; Includes: RecName: Full=Endorhamnosidase;Endo-1,3-alpha-L-rhamnosidase	tail	K4FBU1	Escherichia_phage	37.7	2.1e-109
SQH93030.1|1682513_1684475_-	transferase	NA	A0A193GZ69	Enterobacter_phage	32.4	2.6e-71
SQH93031.1|1684601_1685657_-	Tyrosine recombinase xerD	NA	C6ZR22	Salmonella_phage	96.0	8.9e-199
SQH93032.1|1686084_1687026_-	putative transport	NA	E7DYY8	Enterobacteria_phage	88.5	4.9e-148
>prophage 5
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	1922750	1932767	5118272	tRNA,transposase	Enterobacteria_phage(50.0%)	11	NA	NA
SQH93248.1|1922750_1923698_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.9e-23
SQH93249.1|1923681_1924413_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQH93250.1|1924393_1924501_-	membrane protein	NA	NA	NA	NA	NA
SQH93251.1|1924560_1925292_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQH93252.1|1925514_1927200_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.6	2.9e-276
SQH93253.1|1927196_1927916_+	two-component system response regulator	NA	NA	NA	NA	NA
SQH93254.1|1927962_1928433_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.4	8.0e-75
SQH93255.1|1928584_1929043_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	74.5	8.9e-55
SQH93256.1|1929318_1929843_+	DNA-binding protein	NA	A0A1B1P776	Bacillus_phage	30.5	5.3e-11
SQH93257.1|1929923_1930682_+|transposase	transposase IS3	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	68.7	9.9e-75
SQH93258.1|1930733_1932767_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	2.8e-55
>prophage 6
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	2046759	2054542	5118272	transposase	Escherichia_phage(33.33%)	7	NA	NA
SQH93342.1|2046759_2048025_+|transposase	transposase IS1113	transposase	A0A218MNI5	uncultured_virus	49.2	3.5e-48
SQH93343.1|2048081_2048330_-	virulence protein MsgA	NA	S4TND2	Salmonella_phage	69.0	1.3e-15
SQH93344.1|2048775_2049081_-	Uncharacterized protein yedK	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	44.2	2.9e-17
SQH93345.1|2049615_2051892_+	thiosulfate reductase	NA	A0A077SK27	Escherichia_phage	26.6	1.6e-35
SQH93346.1|2051906_2052485_+	thiosulfate reductase electron transport protein PhsB	NA	A0A077SL61	Escherichia_phage	37.6	1.5e-22
SQH93347.1|2052481_2053246_+	thiosulfate reductase cytochrome b subunit	NA	NA	NA	NA	NA
SQH93348.1|2053375_2054542_+	penicillin-binding protein	NA	B6DZZ7	Stx2-converting_phage	87.9	4.0e-200
>prophage 7
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	2388189	2433141	5118272	protease,tail,tRNA,transposase	Stx2-converting_phage(27.78%)	46	NA	NA
SQH93677.1|2388189_2389059_+|tRNA	S-adenosylmethionine tRNA ribosyltransferase	tRNA	NA	NA	NA	NA
SQH93678.1|2389066_2389687_+	YciO family	NA	NA	NA	NA	NA
SQH93679.1|2389787_2390663_+	pseudouridine synthase	NA	NA	NA	NA	NA
SQH93680.1|2390758_2391349_-	COB(I) alamin adenosyltransferase	NA	NA	NA	NA	NA
SQH93681.1|2391345_2392107_-	oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	22.7	1.8e-07
SQH93682.1|2392350_2393391_+|protease	putative protease sohB	protease	A0A2H4UUF9	Bodo_saltans_virus	30.1	7.3e-20
SQH93683.1|2393432_2393684_-	Protein yciN	NA	NA	NA	NA	NA
SQH93684.1|2394086_2396684_+	DNA topoisomerase 1	NA	A0A2K9L5F8	Tupanvirus	35.6	1.1e-88
SQH93685.1|2397019_2397994_+	CysB family transcriptional regulator	NA	NA	NA	NA	NA
SQH93686.1|2398298_2398427_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH93687.1|2398983_2401659_+	aconitate hydratase 1	NA	NA	NA	NA	NA
SQH93688.1|2401714_2402305_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	48.4	2.9e-42
SQH93689.1|2402500_2403265_+	phosphatidylglycerophosphatase B	NA	NA	NA	NA	NA
SQH93690.1|2403414_2403723_+	Inner membrane protein yciS	NA	NA	NA	NA	NA
SQH93691.1|2403729_2404899_+	Heat shock (predicted periplasmic) proteinYciM precursor	NA	NA	NA	NA	NA
SQH93692.1|2405089_2405827_+	Orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
SQH93693.1|2405826_2406153_+	translation initiaiton factor	NA	NA	NA	NA	NA
SQH93694.1|2406271_2406490_-	osmotically inducible lipoprotein B	NA	NA	NA	NA	NA
SQH93695.1|2406748_2407501_-	regulatory protein	NA	NA	NA	NA	NA
SQH93696.1|2407588_2407768_-	conserved domain protein	NA	NA	NA	NA	NA
SQH93697.1|2407848_2408433_+	DNA-binding protein	NA	A0A1B1P776	Bacillus_phage	30.5	7.7e-11
SQH93698.1|2408513_2409272_+|transposase	transposase IS3	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	68.7	9.9e-75
SQH93699.1|2409339_2411322_-	RNase II stability modulator	NA	G3MA91	Bacillus_virus	32.6	5.9e-18
SQH93700.1|2411582_2413517_-	exoribonuclease II	NA	A0A2H4UVB7	Bodo_saltans_virus	23.5	1.9e-05
SQH93701.1|2413605_2414736_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH93702.1|2414935_2415724_-	enoyl-(acyl carrier protein) reductase	NA	NA	NA	NA	NA
SQH93703.1|2416005_2416107_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH93704.1|2416326_2417640_+	putative inner membrane protein	NA	NA	NA	NA	NA
SQH93705.1|2418165_2418873_+	Cyclic di-GMP phosphodiesterase YhjH	NA	NA	NA	NA	NA
SQH93706.1|2418888_2419695_-	peptide transport system ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	27.4	7.9e-14
SQH93707.1|2419696_2420689_-	Peptide transport system ATP-binding protein sapD	NA	NA	NA	NA	NA
SQH93708.1|2420688_2421579_-	peptide transporter permease SapC	NA	NA	NA	NA	NA
SQH93709.1|2422015_2422165_+|transposase	transposase	transposase	NA	NA	NA	NA
SQH93710.1|2422357_2423374_-|transposase	transposase IS116	transposase	NA	NA	NA	NA
SQH93711.1|2424662_2425340_-	pathogenicity island 2 effector protein SseB	NA	NA	NA	NA	NA
SQH93712.1|2426163_2426550_+|transposase	transposase	transposase	B6DZU5	Stx2-converting_phage	86.0	3.1e-56
SQH93713.1|2426546_2426894_+|transposase	putative transposase subunit	transposase	A0A0P0ZDM8	Stx2-converting_phage	96.5	1.8e-60
SQH93714.1|2426943_2427660_+|transposase	transposase IS66	transposase	A0A0P0ZBS5	Stx2-converting_phage	92.3	6.4e-108
SQH93715.1|2427599_2428481_+	issfl4 orf3	NA	A0A0P0ZEB3	Stx2-converting_phage	88.7	9.5e-154
SQH93716.1|2428679_2429153_-	GogA	NA	Q9MBM2	Phage_Gifsy-1	95.5	8.6e-85
SQH93717.1|2429609_2430155_+	Phage endolysin	NA	T1SBJ3	Salmonella_phage	72.2	3.1e-70
SQH93718.1|2430151_2430583_+|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
SQH93719.1|2430857_2431499_+	type III secretion system effector protein	NA	B6DZZ5	Stx2-converting_phage	33.7	1.0e-16
SQH93720.1|2431713_2432409_-	Chimeric type III secretion system effector protein	NA	A5LH48	Enterobacteria_phage	55.3	1.0e-49
SQH93721.1|2432427_2432742_-	Chimeric type III secretion system effector protein	NA	NA	NA	NA	NA
SQH93722.1|2432826_2433141_+	Phage DNA invertase	NA	S4TTF2	Salmonella_phage	93.1	6.2e-07
>prophage 8
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	2911003	2972303	5118272	protease,tRNA,transposase	Enterobacteria_phage(27.78%)	52	NA	NA
SQH94180.1|2911003_2911762_+|transposase	transposase IS3	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	68.2	2.9e-74
SQH94181.1|2911926_2912457_+	hydrogenase	NA	A0A0U2QLA7	Escherichia_phage	70.2	4.8e-36
SQH94182.1|2912538_2913582_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH94183.1|2914708_2914882_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94184.1|2915517_2915862_+	Periplasmic lysozyme inhibitor of c-typelysozyme	NA	NA	NA	NA	NA
SQH94185.1|2917073_2917631_-	membrane protein	NA	Q9LA63	Enterobacterial_phage	33.7	1.5e-16
SQH94186.1|2918463_2918727_+	virulence protein PagD	NA	NA	NA	NA	NA
SQH94187.1|2919615_2920137_+	EnvE	NA	NA	NA	NA	NA
SQH94188.1|2920327_2920567_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	89.9	1.7e-33
SQH94189.1|2920661_2924822_-|protease	hemoglobin protease	protease	Q9LA54	Enterobacteria_phage	41.8	5.3e-303
SQH94190.1|2925306_2927391_+	phage-like protein	NA	NA	NA	NA	NA
SQH94191.1|2927711_2928113_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
SQH94192.1|2928208_2928460_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94193.1|2928655_2928946_+	Bor protein	NA	C6ZCX3	Enterobacteria_phage	71.9	1.2e-33
SQH94194.1|2929434_2930382_+|protease	outer membrane protease	protease	NA	NA	NA	NA
SQH94195.1|2930630_2933777_+	phage-like protein	NA	NA	NA	NA	NA
SQH94196.1|2933994_2934378_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94197.1|2934428_2935019_+|transposase	transposase IS4 family protein	transposase	S5FM71	Shigella_phage	57.8	3.2e-04
SQH94198.1|2935344_2936532_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94199.1|2936831_2937104_+	Uncharacterized protein yedK	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	44.8	7.0e-15
SQH94200.1|2937486_2938371_+	Chimeric type III secretion system effector protein	NA	A5LH48	Enterobacteria_phage	52.7	4.2e-77
SQH94201.1|2938585_2939248_-	type III secretion system effector protein	NA	B6DZC0	Enterobacteria_phage	38.2	1.6e-33
SQH94202.1|2939465_2939597_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94203.1|2940332_2940770_-|transposase	transposase for IS200	transposase	NA	NA	NA	NA
SQH94204.1|2940936_2942187_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	2.0e-19
SQH94205.1|2942286_2943024_+	putative ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA	NA
SQH94206.1|2943020_2943350_+	putative secreted protein	NA	NA	NA	NA	NA
SQH94207.1|2943361_2943823_+	mutT family protein	NA	NA	NA	NA	NA
SQH94208.1|2943876_2944983_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
SQH94209.1|2945069_2945711_+	lysogenization regulator	NA	NA	NA	NA	NA
SQH94210.1|2945714_2947085_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.5	8.5e-109
SQH94211.1|2947208_2947883_+	transcriptional regulator PhoP,regulator of virulence determinants	NA	NA	NA	NA	NA
SQH94212.1|2947882_2949346_+	sensor protein PhoQ, regulator of virulence determinants	NA	NA	NA	NA	NA
SQH94213.1|2949426_2950548_+	protein ycfD	NA	NA	NA	NA	NA
SQH94214.1|2950587_2951802_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94215.1|2951934_2953164_-	peptidase T	NA	NA	NA	NA	NA
SQH94216.1|2953414_2954551_+	spermidine/putrescine transport ATP-binding protein PotA	NA	G3M9Y6	Bacillus_virus	34.0	2.1e-28
SQH94217.1|2954534_2955398_+	spermidine/putrescine ABC transporter membrane protein	NA	Q6GZ02	Mycoplasma_phage	26.2	2.0e-10
SQH94218.1|2955851_2956058_+	effector protein SifA	NA	NA	NA	NA	NA
SQH94219.1|2956010_2957213_-	Transposase for insertion sequence element ISRM3	NA	A0A218MNI5	uncultured_virus	71.0	1.3e-76
SQH94220.1|2957455_2958169_+	effector protein SifA	NA	NA	NA	NA	NA
SQH94221.1|2958485_2959265_+	Spermidine Putrescine ABC transporter permease component potC	NA	NA	NA	NA	NA
SQH94222.1|2959289_2960336_+	spermidine/putrescine-binding periplasmic protein	NA	NA	NA	NA	NA
SQH94223.1|2960402_2961389_-	invertase	NA	NA	NA	NA	NA
SQH94224.1|2961628_2962450_-	NAD-dependent protein deacetylase of SIR2 family	NA	A0A2I7S9Y2	Vibrio_phage	34.0	2.8e-22
SQH94225.1|2962468_2963380_-	ROK family protein	NA	NA	NA	NA	NA
SQH94226.1|2963408_2964653_-	ABC transporter	NA	NA	NA	NA	NA
SQH94227.1|2964652_2965354_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.7	2.4e-35
SQH94228.1|2965346_2966546_-	outer membrane-specific lipoprotein transporter subunit LolC	NA	NA	NA	NA	NA
SQH94229.1|2966883_2970330_+	transcription-repair coupling factor (TrcF)	NA	NA	NA	NA	NA
SQH94230.1|2970477_2971443_+	LD-transpeptidase YcfS	NA	NA	NA	NA	NA
SQH94231.1|2971544_2972303_-|transposase	transposase IS3	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	68.2	2.9e-74
>prophage 9
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	3102273	3142416	5118272	head,protease,integrase,plate,tail	Vibrio_phage(18.6%)	61	3138173:3138187	3144654:3144668
SQH94366.1|3102273_3102513_-|tail	Putative prophage tail fibre C-terminus	tail	A0A0P0ZEF0	Stx2-converting_phage	56.2	2.0e-18
SQH94367.1|3102499_3103138_-|tail	Putative prophage tail fibre C-terminus	tail	A0A2I7RBK1	Vibrio_phage	40.1	8.1e-30
SQH94368.1|3103130_3103853_-	bacteriophage protein	NA	A0A2P9HXZ0	Yersinia_phage	51.1	1.8e-65
SQH94369.1|3103849_3105031_-	bacteriophage protein	NA	A0A2I7QS90	Vibrio_phage	48.2	3.5e-103
SQH94370.1|3105014_3105395_-	Uncharacterised protein	NA	A0A2H5BFY4	Vibrio_phage	56.9	1.0e-24
SQH94371.1|3105391_3105988_-|plate	baseplate protein	plate	A0A2P9HY74	Yersinia_phage	63.3	2.2e-45
SQH94372.1|3106056_3107412_-	Uncharacterised protein	NA	A0A223LJ40	Erwinia_phage	55.1	2.5e-129
SQH94373.1|3107414_3107717_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94374.1|3107713_3108292_-|tail	Phage tail fiber protein	tail	Q687E6	Enterobacteria_phage	58.3	1.2e-24
SQH94375.1|3108393_3108486_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94376.1|3108551_3109496_-	Uncharacterised protein	NA	A0A2P9HXK2	Yersinia_phage	47.1	1.8e-70
SQH94377.1|3109495_3109831_-	Uncharacterised protein	NA	A0A2I7RBP0	Vibrio_phage	53.8	2.5e-30
SQH94378.1|3109838_3110639_-	Uncharacterised protein	NA	A0A2P9HXI6	Yersinia_phage	42.9	4.4e-49
SQH94379.1|3110635_3112438_-	putative bacteriophage protein	NA	A0A2I7QS75	Vibrio_phage	46.3	1.9e-87
SQH94380.1|3112424_3112583_-	Uncharacterised protein	NA	A0A2P9HXJ0	Yersinia_phage	68.0	9.3e-12
SQH94381.1|3112591_3113020_-	Uncharacterised protein	NA	A0A2P9HXM8	Yersinia_phage	45.7	7.6e-24
SQH94382.1|3113029_3113461_-	Uncharacterised protein	NA	A0A2P9HXY3	Yersinia_phage	53.1	1.5e-32
SQH94383.1|3113471_3114974_-	hypothetical prophage protein	NA	A0A2I7QS67	Vibrio_phage	57.2	1.4e-152
SQH94384.1|3114974_3115463_-	Uncharacterised protein	NA	A0A2I7QS82	Vibrio_phage	56.1	1.7e-40
SQH94385.1|3115459_3115816_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94386.1|3115812_3116385_-	Mu-like prophage protein gpG	NA	A0A2I7QS63	Vibrio_phage	38.1	1.1e-25
SQH94387.1|3116402_3116765_-	Uncharacterised protein	NA	Q7Y5T9	Haemophilus_phage	41.4	6.0e-14
SQH94388.1|3116779_3117748_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQH94389.1|3117751_3118243_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94390.1|3118245_3119394_-|head,protease	head protein/prohead protease	head,protease	A0A2H4J159	uncultured_Caudovirales_phage	33.5	4.6e-15
SQH94391.1|3119397_3120249_-	phage Mu protein F like protein	NA	Q7Y5U5	Haemophilus_phage	33.5	1.1e-29
SQH94392.1|3120226_3121549_-	Phage-associated protein	NA	L7TRA1	Rhizobium_phage	25.2	1.5e-22
SQH94393.1|3121548_3122967_-	phage uncharacterized protein, C-terminal domain	NA	A0A2K9V3I6	Faecalibacterium_phage	41.2	9.8e-84
SQH94394.1|3122932_3123919_-	Terminase small subunit	NA	I6X6R5	Burkholderia_virus	46.1	1.8e-44
SQH94395.1|3123979_3124531_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94396.1|3124585_3125107_-|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
SQH94397.1|3125103_3125730_-	Phage endolysin	NA	Q858F0	Salmonella_phage	79.2	3.9e-93
SQH94398.1|3125729_3126011_-	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	79.6	1.7e-35
SQH94399.1|3125997_3126387_-	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	71.0	1.4e-40
SQH94400.1|3126961_3127213_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94401.1|3127199_3127394_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94402.1|3127449_3127674_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94403.1|3127919_3128369_+	Gifsy-2 prophage protein	NA	NA	NA	NA	NA
SQH94404.1|3128505_3128631_-	Gifsy-2 prophage protein	NA	NA	NA	NA	NA
SQH94405.1|3128916_3129495_-	putative bacteriophage protein	NA	A0A0U2S606	Escherichia_phage	52.0	2.4e-44
SQH94406.1|3129491_3129785_-	putative bacteriophage protein	NA	A0A0U2KD41	Escherichia_phage	65.3	2.1e-33
SQH94407.1|3129781_3130378_-	gifsy-2 prophage protein	NA	H9C173	Pectobacterium_phage	74.2	6.5e-82
SQH94408.1|3130446_3130638_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94409.1|3130819_3131158_-	Uncharacterised protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
SQH94410.1|3131157_3131328_-	methyltransferase	NA	I6S1S6	Salmonella_phage	87.5	1.1e-05
SQH94411.1|3131324_3131927_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	2.3e-98
SQH94412.1|3131919_3132168_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94413.1|3132171_3132852_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94414.1|3132889_3134278_-	replicative DNA helicase	NA	Q8HA30	Enterobacteria_phage	46.6	1.2e-105
SQH94415.1|3134274_3135255_-	replication protein	NA	H9C164	Pectobacterium_phage	79.6	4.0e-44
SQH94416.1|3135257_3135482_-	Uncharacterised protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
SQH94417.1|3135504_3136065_-	Protein of uncharacterised function (DUF1019)	NA	H9C162	Pectobacterium_phage	50.4	9.0e-25
SQH94418.1|3136015_3136219_-	regulatory protein cro (Antirepressor)	NA	K7PHK4	Enterobacteria_phage	46.6	4.0e-07
SQH94419.1|3136297_3136699_+	Phage repressor protein C2	NA	I6PD69	Cronobacter_phage	55.6	2.5e-37
SQH94420.1|3137352_3137676_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94421.1|3137683_3137929_+	Uncharacterised protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
SQH94422.1|3137958_3140232_+	Exodeoxyribonuclease VIII	NA	H9C157	Pectobacterium_phage	34.8	1.5e-102
3138173:3138187	attL	AATTTGATGAACAAT	NA	NA	NA	NA
SQH94423.1|3140228_3140783_+	Siphovirus Gp157	NA	H9C156	Pectobacterium_phage	59.3	7.5e-48
SQH94424.1|3140785_3140968_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94425.1|3141180_3141405_+	phage-like protein	NA	NA	NA	NA	NA
SQH94426.1|3141405_3142416_+|integrase	site-specific recombinase, phage integrase family protein	integrase	A0A192Y7M7	Salmonella_phage	53.0	7.7e-91
3144654:3144668	attR	AATTTGATGAACAAT	NA	NA	NA	NA
>prophage 10
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	3173596	3181034	5118272	transposase	Escherichia_phage(42.86%)	8	NA	NA
SQH94456.1|3173596_3176209_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.2	2.4e-19
SQH94457.1|3176618_3176858_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	86.1	7.2e-32
SQH94458.1|3177069_3177234_-|transposase	transposase	transposase	NA	NA	NA	NA
SQH94459.1|3177731_3178550_+	toxin	NA	A5LH53	Enterobacteria_phage	50.7	2.5e-63
SQH94460.1|3178617_3178995_+	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
SQH94461.1|3179143_3179686_-	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	67.0	8.1e-71
SQH94462.1|3179876_3180605_-	Pertussis toxin, subunit 1 subfamily	NA	A0A0U2KD26	Escherichia_phage	51.6	7.8e-61
SQH94463.1|3180620_3181034_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	2.4e-19
>prophage 11
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	3185877	3198705	5118272	tail,tRNA	Salmonella_phage(30.0%)	13	NA	NA
SQH94465.1|3185877_3186912_+	Uncharacterised protein	NA	A4KWR9	Enterobacteria_phage	41.1	4.3e-73
SQH94466.1|3187736_3188939_-	Transposase for insertion sequence element ISRM3	NA	A0A218MNI5	uncultured_virus	71.0	1.3e-76
SQH94467.1|3188963_3189398_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94468.1|3189510_3189753_-|tail	Putative prophage tail fibre C-terminus	tail	A0A0P0ZEF0	Stx2-converting_phage	55.1	3.0e-17
SQH94469.1|3189730_3189895_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH94470.1|3189907_3192652_-	host-specificity protein	NA	A0A0K2FI38	Escherichia_phage	68.1	6.1e-284
SQH94471.1|3192654_3193539_+	gifsy-2 prophage RecT	NA	A0A2I7RQF1	Vibrio_phage	43.4	2.6e-42
SQH94472.1|3193581_3193821_+	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	97.5	4.4e-37
SQH94473.1|3193998_3194145_+	Putative bacteriophage protein	NA	A0A1B5FPC2	Escherichia_phage	81.2	4.0e-17
SQH94474.1|3194152_3194446_+	excisionase	NA	S4TND0	Salmonella_phage	86.2	5.9e-36
SQH94475.1|3194445_3195738_+	Integrase	NA	S4TSP2	Salmonella_phage	91.4	7.2e-235
SQH94476.1|3195932_3197135_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQH94477.1|3197304_3198705_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9V902	Bandra_megavirus	35.9	2.6e-81
>prophage 12
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	3680787	3740363	5118272	protease,tRNA,transposase	Bacillus_phage(23.08%)	51	NA	NA
SQH94897.1|3680787_3681705_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQH94898.1|3681701_3682154_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQH94899.1|3682154_3682571_-	copper efflux regulator	NA	NA	NA	NA	NA
SQH94900.1|3682680_3685182_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.1	1.0e-112
SQH94901.1|3686316_3686796_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQH94902.1|3687061_3688048_+	invertase	NA	NA	NA	NA	NA
SQH94903.1|3688130_3689783_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQH94904.1|3689955_3691176_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQH94905.1|3691390_3693067_+	transport protein	NA	NA	NA	NA	NA
SQH94906.1|3693115_3694420_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQH94907.1|3694572_3695544_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	5.1e-15
SQH94908.1|3695540_3696503_-	ferrochelatase	NA	NA	NA	NA	NA
SQH94909.1|3696704_3697349_-	adenylate kinase	NA	NA	NA	NA	NA
SQH94910.1|3697581_3699456_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.3e-115
SQH94911.1|3699566_3700172_-	recombination protein RecR	NA	NA	NA	NA	NA
SQH94912.1|3700171_3700501_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQH94913.1|3702588_3703140_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQH94914.1|3703292_3703670_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQH94915.1|3703750_3704266_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQH94916.1|3704279_3704447_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH94917.1|3704516_3704972_+	Transposase_31	NA	Q2A0A7	Sodalis_phage	54.9	3.1e-39
SQH94918.1|3705149_3705641_+|transposase	Putative transposase	transposase	Q2A0A7	Sodalis_phage	48.0	7.9e-17
SQH94919.1|3705682_3709045_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQH94920.1|3709163_3709817_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQH94921.1|3709958_3711152_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQH94922.1|3711174_3714324_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQH94923.1|3714821_3715196_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQH94924.1|3715223_3715442_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQH94925.1|3715620_3716172_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQH94926.1|3716287_3716758_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQH94927.1|3716958_3717219_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQH94928.1|3717443_3718994_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQH94929.1|3719302_3719614_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQH94930.1|3719646_3720216_-	lipoprotein	NA	NA	NA	NA	NA
SQH94931.1|3720430_3721291_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQH94932.1|3721390_3722677_-	ammonium transporter	NA	NA	NA	NA	NA
SQH94933.1|3722708_3723047_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQH94934.1|3723259_3725041_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.3	1.7e-37
SQH94935.1|3725033_3726806_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQH94936.1|3726846_3727305_-	transcriptional regulator	NA	NA	NA	NA	NA
SQH94937.1|3727417_3728473_+	lyase	NA	NA	NA	NA	NA
SQH94938.1|3728522_3729341_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQH94939.1|3729441_3731142_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQH94940.1|3731206_3731902_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	2.7e-87
SQH94941.1|3732007_3732406_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQH94942.1|3732509_3732884_-	competence protein ComEA	NA	NA	NA	NA	NA
SQH94943.1|3733033_3734905_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQH94944.1|3735195_3735468_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQH94945.1|3735676_3738031_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	7.2e-225
SQH94946.1|3738216_3739488_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	2.5e-131
SQH94947.1|3739739_3740363_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 13
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	3875430	3924173	5118272	holin,head,protease,integrase,tail	Salmonella_phage(59.18%)	62	3873322:3873354	3920295:3920327
3873322:3873354	attL	AGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
SQH95068.1|3875430_3876201_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A076YN96	Rhizobium_phage	28.3	1.7e-10
SQH95069.1|3876397_3876724_-|tail	Phage tail fiber	tail	E5G6P1	Salmonella_phage	66.7	5.6e-35
SQH95070.1|3877907_3878915_+	phage protein	NA	Q8HAB2	Salmonella_phage	90.4	2.7e-181
SQH95071.1|3878915_3879065_-|tail	major tail sheath domain protein	tail	S4TRX2	Salmonella_phage	70.7	1.1e-06
SQH95072.1|3879763_3881293_-	gp19	NA	A0A1B0VFW4	Salmonella_phage	87.2	1.4e-83
SQH95073.1|3881292_3881973_-	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	8.1e-129
SQH95074.1|3881969_3883169_-	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	1.1e-213
SQH95075.1|3883169_3883523_-	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	97.4	2.1e-59
SQH95076.1|3883522_3884275_-	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	71.3	4.7e-93
SQH95077.1|3884497_3884863_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95078.1|3884882_3885230_-	putative secreted protein	NA	A0A0M4RTY3	Salmonella_phage	69.2	1.2e-22
SQH95079.1|3885226_3886294_-	bacteriophage protein	NA	A0A0M4QX01	Salmonella_phage	90.4	1.2e-171
SQH95080.1|3886296_3886599_-	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
SQH95081.1|3886598_3887174_-	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	99.5	5.3e-97
SQH95082.1|3887173_3889183_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	99.4	0.0e+00
SQH95083.1|3889360_3889813_-	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	81.3	3.2e-65
SQH95084.1|3889816_3890260_-	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.5	6.0e-56
SQH95085.1|3890272_3891418_-	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	75.3	1.2e-164
SQH95086.1|3891421_3891985_-	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	78.7	4.7e-82
SQH95087.1|3891959_3892349_-	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	99.2	9.2e-69
SQH95088.1|3892335_3892890_-	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	98.4	3.4e-93
SQH95089.1|3892886_3893306_-	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	96.3	1.4e-70
SQH95090.1|3893259_3893628_-	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
SQH95091.1|3893669_3894611_-	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
SQH95092.1|3894622_3895120_-	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
SQH95093.1|3895124_3896357_-|head,protease	head protein/prohead protease	head,protease	A0A0M4R5A6	Salmonella_phage	99.5	1.6e-228
SQH95094.1|3896371_3896980_-	putative bacteriophage protein	NA	A0A0M4REK0	Salmonella_phage	88.1	6.4e-101
SQH95095.1|3896993_3898463_-	Phage-associated protein	NA	A0A0M4S6U1	Salmonella_phage	99.4	5.8e-281
SQH95096.1|3898462_3900085_-	gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	98.3	0.0e+00
SQH95097.1|3900087_3900660_-	Terminase small subunit	NA	A0A2H4J480	uncultured_Caudovirales_phage	68.5	8.0e-61
SQH95098.1|3900680_3901169_-	lysozyme	NA	Q8HA85	Salmonella_phage	92.5	2.0e-73
SQH95099.1|3901165_3901780_-	bacteriophage protein	NA	Q8HA86	Salmonella_phage	83.3	4.5e-94
SQH95100.1|3901782_3902130_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	81.3	4.4e-46
SQH95101.1|3902608_3903043_-	phage antiterminator	NA	B6SD39	Bacteriophage	58.9	4.5e-40
SQH95102.1|3903035_3903374_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95103.1|3903331_3905518_-	Predicted P-loop ATPase and inactivated derivatives	NA	B6SCY1	Bacteriophage	71.5	1.7e-172
SQH95104.1|3905521_3905734_-	regulatory protein Cro (antirepressor)	NA	A0A0R6PHL1	Moraxella_phage	42.9	6.0e-06
SQH95105.1|3905854_3906478_+	DNA-binding protein	NA	A0A1I9KG86	Aeromonas_phage	45.3	1.1e-36
SQH95106.1|3907018_3907543_+	Mobile element protein	NA	C9EH97	Sodalis_phage	48.3	2.4e-40
SQH95107.1|3907655_3907805_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95108.1|3907801_3908704_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95109.1|3908706_3910008_+	Protein of uncharacterised function (DUF2800)	NA	B6SCX9	Bacteriophage	56.3	2.5e-134
SQH95110.1|3910022_3910571_+	Protein of uncharacterised function (DUF2815)	NA	Q775A5	Bordetella_phage	64.8	6.0e-66
SQH95111.1|3910621_3911260_+	Uncharacterised protein	NA	H6WRY3	Salmonella_phage	70.5	1.7e-75
SQH95112.1|3911334_3913401_+	bifunctional 3'-5' exonuclease/DNA polymerase	NA	Q775A3	Bordetella_phage	67.4	8.2e-273
SQH95113.1|3913405_3913618_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95114.1|3913614_3913818_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95115.1|3913828_3914044_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95116.1|3914044_3914524_+	DNA N-4 cytosine methyltransferase M.NgoMXV	NA	H9C170	Pectobacterium_phage	80.1	1.9e-68
SQH95117.1|3914526_3914796_+	putative phage related protein	NA	B6SD64	Bacteriophage	67.1	7.9e-27
SQH95118.1|3914822_3915056_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95119.1|3915079_3915676_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95120.1|3915732_3917124_+	phage-related DNA helicase	NA	Q3LZN8	Bacteriophage	73.7	5.4e-212
SQH95121.1|3917120_3917258_+	Arc-like DNA binding domain	NA	NA	NA	NA	NA
SQH95122.1|3917254_3917599_-	bacteriophage regulatory protein	NA	NA	NA	NA	NA
SQH95123.1|3917713_3917890_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95124.1|3917950_3918634_+	Uncharacterized phage-encoded protein	NA	B1GS65	Salmonella_phage	48.0	1.1e-16
SQH95125.1|3918770_3918959_+	DNA-binding protein	NA	NA	NA	NA	NA
SQH95126.1|3918955_3920128_-|integrase	prophage CPS-53 integrase	integrase	Q7M297	Enterobacteria_phage	49.7	2.0e-111
SQH95127.1|3920472_3921723_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.7	8.0e-98
3920295:3920327	attR	AGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
SQH95128.1|3921734_3922838_-	Glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
SQH95129.1|3923120_3924173_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	58.7	2.3e-114
>prophage 14
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5118272	4718614	4760735	5118272	plate,tail,tRNA,transposase	Burkholderia_phage(27.78%)	43	NA	NA
SQH95828.1|4718614_4719613_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SQH95829.1|4719700_4721011_-	conjugative transfer protein	NA	NA	NA	NA	NA
SQH95830.1|4721257_4721773_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
SQH95831.1|4721871_4722084_-	stress-response protein	NA	NA	NA	NA	NA
SQH95832.1|4722102_4722231_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH95833.1|4722212_4723538_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
SQH95834.1|4723717_4724326_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
SQH95835.1|4724434_4724803_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQH95836.1|4724973_4727394_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQH95837.1|4727504_4728377_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SQH95838.1|4728390_4728888_-	chorismate lyase	NA	NA	NA	NA	NA
SQH95839.1|4729068_4729986_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
SQH95840.1|4730149_4731508_-	maltoporin	NA	NA	NA	NA	NA
SQH95841.1|4731595_4732705_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
SQH95842.1|4733066_4734257_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
SQH95843.1|4734388_4735933_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQH95844.1|4735947_4736838_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQH95845.1|4737181_4738657_+	D-xylose transporter XylE	NA	NA	NA	NA	NA
SQH95846.1|4738702_4739113_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
SQH95847.1|4739254_4741351_-	lipoprotein	NA	NA	NA	NA	NA
SQH95848.1|4741350_4742088_-	putative lipoprotein	NA	NA	NA	NA	NA
SQH95849.1|4742084_4742723_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
SQH95850.1|4742786_4743032_-	YjbE secreted protein	NA	NA	NA	NA	NA
SQH95851.1|4743417_4743942_+	DNA-binding protein	NA	A0A1B1P776	Bacillus_phage	30.5	5.3e-11
SQH95852.1|4744022_4744781_+|transposase	transposase IS3	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	68.7	9.9e-75
SQH95853.1|4744922_4746572_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQH95854.1|4746960_4748310_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
SQH95855.1|4748444_4748792_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
SQH95856.1|4749367_4749655_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	2.3e-16
SQH95857.1|4749657_4750263_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	57.8	7.4e-57
SQH95858.1|4750275_4750590_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	4.9e-20
SQH95859.1|4750749_4751205_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQH95860.1|4751201_4751399_+	gp12	NA	Q6QIB1	Burkholderia_phage	52.9	5.1e-07
SQH95861.1|4751388_4752804_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	69.5	6.3e-184
SQH95862.1|4752803_4753328_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	69.0	4.0e-67
SQH95863.1|4753379_4753697_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQH95864.1|4753878_4756164_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	28.8	9.3e-68
SQH95865.1|4756163_4757117_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	53.1	4.2e-38
SQH95866.1|4757116_4757326_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
SQH95867.1|4757313_4758354_+	gp21	NA	A4JWL3	Burkholderia_virus	45.9	3.0e-74
SQH95868.1|4758363_4759086_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
SQH95869.1|4759250_4760210_+|tail	phage tail fiber protein H	tail	A0A0M3ULH6	Salmonella_phage	42.9	2.1e-37
SQH95870.1|4760219_4760735_+|tail	tail assembly chaperone gp38	tail	A0A0U2QV64	Escherichia_phage	42.4	1.2e-34
