assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900477985.1_47297_D02	LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	2	1138124-1139434	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,PD-DExK,DEDDh,csa3,DinG	Unclear	GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG	29,29,29	2	2	1139252-1139283|1139374-1139405	LS483456.1_3880360-3880391|LS483456.1_972451-972420	I-E:I-E:I-E	20,21,21	21	Unclear	cas3,PD-DExK,DEDDh,csa3,DinG	NA,NA	NA|447aa|up_9|LS483456.1_1122517_1123858_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|LS483456.1_1123878_1125219_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|LS483456.1_1125296_1126439_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|LS483456.1_1126511_1129268_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|LS483456.1_1129325_1130621_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|LS483456.1_1130672_1132907_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|LS483456.1_1132981_1133773_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|LS483456.1_1134000_1135638_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LS483456.1_1135720_1137019_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LS483456.1_1137155_1137827_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|LS483456.1_1139531_1140329_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LS483456.1_1140418_1140781_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LS483456.1_1141208_1143008_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LS483456.1_1143007_1144720_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LS483456.1_1144735_1145470_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|LS483456.1_1145557_1146511_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|576aa|down_6|LS483456.1_1146952_1148680_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|349aa|down_7|LS483456.1_1148989_1150036_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_8|LS483456.1_1150287_1151196_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_9|LS483456.1_1151205_1152645_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional
GCA_900477985.1_47297_D02	LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	3	1148642-1148975	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,PD-DExK,DEDDh,csa3,DinG	Unclear	AGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGTCAGCGGGGATAAACCG,GTGTTCCCCGCGNCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	2,5,5	5	Unclear	cas3,PD-DExK,DEDDh,csa3,DinG	NA,NA	NA|264aa|up_9|LS483456.1_1132981_1133773_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_8|LS483456.1_1134000_1135638_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_7|LS483456.1_1135720_1137019_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_6|LS483456.1_1137155_1137827_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_5|LS483456.1_1139531_1140329_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_4|LS483456.1_1140418_1140781_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_3|LS483456.1_1141208_1143008_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_2|LS483456.1_1143007_1144720_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_1|LS483456.1_1144735_1145470_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_0|LS483456.1_1145557_1146511_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|349aa|down_0|LS483456.1_1148989_1150036_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LS483456.1_1150287_1151196_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LS483456.1_1151205_1152645_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LS483456.1_1152631_1153237_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LS483456.1_1153287_1153611_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LS483456.1_1153801_1154113_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LS483456.1_1154131_1154842_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LS483456.1_1154841_1155321_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LS483456.1_1155317_1156367_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LS483456.1_1156347_1157109_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900477985.1_47297_D02	LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	5	2352868-2353014	5	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,csa3,DinG	Orphan	GTTCCCCGCGAGAGCGGGGATAAACCG	27	0	0	NA	NA	I-E	2	2	Orphan	cas3,PD-DExK,DEDDh,csa3,DinG	NA,NA	NA|230aa|up_9|LS483456.1_2338566_2339256_+	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|118aa|up_8|LS483456.1_2339282_2339636_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|422aa|up_7|LS483456.1_2339971_2341237_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_6|LS483456.1_2341237_2341888_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_5|LS483456.1_2341880_2343677_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|466aa|up_4|LS483456.1_2344015_2345413_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|LS483456.1_2345799_2349543_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|LS483456.1_2349539_2351075_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|LS483456.1_2351071_2351782_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|LS483456.1_2351781_2352459_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|LS483456.1_2354048_2354891_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|LS483456.1_2354941_2355400_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|299aa|down_2|LS483456.1_2355519_2356416_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|LS483456.1_2356506_2357520_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_4|LS483456.1_2357722_2358631_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_5|LS483456.1_2358762_2359176_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_6|LS483456.1_2359838_2360456_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_7|LS483456.1_2360652_2363331_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_8|LS483456.1_2363807_2364455_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|544aa|down_9|LS483456.1_2365219_2366851_+	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional
