The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483475	Salmonella enterica subsp. salamae serovar Greenside strain NCTC9936 genome assembly, chromosome: 1	4732250	1177288	1253876	4732250	terminase,plate,holin,tRNA,integrase,tail,head,transposase,protease	Salmonella_phage(58.62%)	83	1177404:1177420	1236959:1236975
SQI54293.1|1177288_1178617_-|transposase	Insertion element 4 transposase N-terminal	transposase	NA	NA	NA	NA
1177404:1177420	attL	CTCTCCAGATCACGCAT	NA	NA	NA	NA
SQI54294.1|1178738_1179476_-	lipoprotein	NA	NA	NA	NA	NA
SQI54295.1|1179607_1180588_+	ftsH suppressor protein SfhB	NA	NA	NA	NA	NA
SQI54296.1|1180584_1181316_+	membrane protein	NA	NA	NA	NA	NA
SQI54297.1|1181445_1184019_+	protein disaggregation chaperone	NA	H6X3M6	Enterobacteria_phage	35.4	9.9e-127
SQI54298.1|1190304_1190760_+	Putative cytoplasmic protein	NA	E3SMI8	Prochlorococcus_phage	50.0	1.7e-34
SQI54299.1|1190863_1192165_+	alpha-ketoglutarate transporter	NA	Q6JIH2	Burkholderia_virus	30.1	2.6e-43
SQI54300.1|1192161_1192485_-	lipoprotein	NA	NA	NA	NA	NA
SQI54301.1|1192529_1193885_-	phosphatidylserine synthase	NA	NA	NA	NA	NA
SQI54302.1|1193999_1196660_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
SQI54303.1|1196696_1197395_-	DTW domain-containing protein	NA	NA	NA	NA	NA
SQI54304.1|1197467_1197887_-	thioredoxin 2	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
SQI54305.1|1198090_1199128_+|tRNA	tRNA/rRNA methyltransferase YfiF	tRNA	NA	NA	NA	NA
SQI54306.1|1199242_1199932_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.1	7.9e-55
SQI54307.1|1200250_1200634_+	Pyruvate formate-lyase	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
SQI54308.1|1200750_1202085_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
SQI54309.1|1202214_1202952_+|tRNA	tRNA (adenine-N(6)-)-methyltransferase	tRNA	NA	NA	NA	NA
SQI54310.1|1202936_1204559_-	L-aspartate oxidase	NA	NA	NA	NA	NA
SQI54311.1|1204983_1205559_+	RNA polymerase sigma-E factor (sigma-24)	NA	NA	NA	NA	NA
SQI54312.1|1205590_1206241_+	anti-RNA polymerase sigma factor SigE	NA	NA	NA	NA	NA
SQI54313.1|1206240_1207197_+	anti-sigma E factor	NA	NA	NA	NA	NA
SQI54314.1|1207193_1207673_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
SQI54315.1|1208170_1209400_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.6	5.8e-234
SQI54318.1|1209377_1209662_-	excisionase-like protein	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
SQI54321.1|1209702_1209942_-	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	98.7	5.7e-37
SQI54323.1|1209984_1211094_-	gifsy-2 prophage RecT	NA	A0A2I7RQF1	Vibrio_phage	42.9	2.9e-59
SQI54326.1|1211105_1214030_-	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	73.4	0.0e+00
SQI54327.1|1214170_1214341_-	DNA breaking-rejoining protein	NA	K7PGY4	Enterobacteria_phage	49.0	9.7e-07
SQI54328.1|1214333_1214450_-	Gifsy-1 prophage protein	NA	NA	NA	NA	NA
SQI54329.1|1214737_1214944_+	bacteriophage protein	NA	K7P7I0	Enterobacteria_phage	69.1	9.6e-17
SQI54330.1|1215162_1216371_-|transposase	transposase IS1113	transposase	A0A218MNI5	uncultured_virus	51.3	4.2e-51
SQI54331.1|1216440_1216728_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI54332.1|1216729_1217155_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI54333.1|1217197_1217665_-	DNA-binding protein	NA	K7PHG0	Enterobacteria_phage	85.8	5.5e-68
SQI54335.1|1217678_1217906_+	phage regulatory protein	NA	K7PKS2	Enterobacteria_phage	95.9	1.5e-34
SQI54339.1|1217925_1218246_+	repressor	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
SQI54354.1|1218336_1219314_+	regulatory protein	NA	H6WRX7	Salmonella_phage	99.3	1.4e-161
SQI54356.1|1219316_1220066_+	DNA replication protein DnaC	NA	H6WRX8	Salmonella_phage	100.0	6.6e-140
SQI54358.1|1220076_1220424_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	100.0	4.5e-59
SQI54359.1|1220420_1220741_+	Uncharacterised protein	NA	H6WRY0	Salmonella_phage	65.5	6.7e-25
SQI54360.1|1220740_1220986_+	Uncharacterised protein	NA	Q5G8U9	Enterobacteria_phage	88.9	3.0e-33
SQI54361.1|1221296_1222511_+	Uncharacterised protein	NA	J9Q803	Salmonella_phage	53.3	3.0e-118
SQI54362.1|1222656_1222983_+	phage-like protein	NA	NA	NA	NA	NA
SQI54363.1|1222982_1223090_+	phage-like protein	NA	NA	NA	NA	NA
SQI54364.1|1223230_1223464_+	Gifsy-1 prophage DinI	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
SQI54365.1|1223863_1224466_+	bacteriophage protein	NA	A0A0M4QX23	Salmonella_phage	99.0	9.8e-110
SQI54366.1|1224465_1224672_+	Phage protein	NA	H6WRY8	Salmonella_phage	90.9	3.4e-30
SQI54367.1|1224674_1225286_+	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	97.5	8.7e-90
SQI54368.1|1225418_1226216_+	molecular chaperone	NA	A0A0M4S661	Salmonella_phage	99.6	4.0e-151
SQI54369.1|1226614_1226962_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	9.8e-46
SQI54370.1|1226964_1227591_+	Phage endolysin	NA	Q858F0	Salmonella_phage	80.2	3.0e-93
SQI54371.1|1227587_1228130_+|tail	phage-tail assembly protein	tail	NA	NA	NA	NA
SQI54372.1|1228184_1228736_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI54373.1|1228796_1229549_+|terminase	putative prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	53.6	2.0e-11
SQI54374.1|1229514_1230933_+|terminase	putative prophage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.0	3.7e-184
SQI54375.1|1230973_1232437_+	Phage-associated protein	NA	A0A0M4S6U1	Salmonella_phage	56.7	8.4e-155
SQI54376.1|1232513_1233047_+	phage Mu protein F like protein	NA	A0A0M4REK0	Salmonella_phage	53.4	5.7e-45
SQI54377.1|1233098_1234376_+|head,protease	head protein/prohead protease	head,protease	A0A0M4R5A6	Salmonella_phage	42.8	1.2e-77
SQI54378.1|1234387_1234891_+	putative bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	45.5	5.8e-31
SQI54379.1|1234902_1235850_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	54.5	1.2e-98
SQI54380.1|1235899_1236268_+	putative bacteriophage protein	NA	NA	NA	NA	NA
SQI54381.1|1236236_1236647_+	bacteriophage protein	NA	A0A2H4J1A6	uncultured_Caudovirales_phage	50.4	9.8e-29
SQI54382.1|1236643_1237153_+	bacteriophage protein	NA	A0A2H4J488	uncultured_Caudovirales_phage	40.7	3.8e-22
1236959:1236975	attR	ATGCGTGATCTGGAGAG	NA	NA	NA	NA
SQI54383.1|1237152_1237557_+	bacteriophage protein	NA	A0A2H4J1A4	uncultured_Caudovirales_phage	69.2	1.2e-42
SQI54384.1|1237549_1238095_+	bacteriophage protein	NA	A0A2H4J1A0	uncultured_Caudovirales_phage	53.6	4.6e-50
SQI54385.1|1238098_1239244_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	75.1	4.5e-164
SQI54386.1|1239255_1239696_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.0	4.6e-56
SQI54387.1|1239699_1240152_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	77.2	1.1e-60
SQI54388.1|1240329_1242306_+	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	96.7	0.0e+00
SQI54389.1|1242338_1242926_+	putative bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	90.8	1.0e-87
SQI54390.1|1242925_1243228_+	bacteriophage protein	NA	A0A0M4R5B7	Salmonella_phage	94.0	2.2e-49
SQI54391.1|1243230_1244298_+	bacteriophage protein	NA	A0A0M4QX01	Salmonella_phage	86.7	4.6e-171
SQI54392.1|1244297_1244651_+	putative secreted protein	NA	A0A0M4RTY3	Salmonella_phage	85.3	7.7e-30
SQI54393.1|1244657_1245188_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI54394.1|1245190_1245364_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI54395.1|1245423_1246179_+|plate	baseplate protein	plate	A0A0M5M1K7	Salmonella_phage	92.8	1.3e-127
SQI54396.1|1246178_1246532_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	96.6	3.5e-59
SQI54397.1|1246532_1247732_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.0	7.2e-213
SQI54398.1|1247728_1248409_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.2	9.0e-128
SQI54399.1|1248408_1249641_+	hypothetical prophage protein	NA	A0A0M3ULD8	Salmonella_phage	48.9	3.9e-81
SQI54400.1|1249640_1249994_+|tail	tail fiber assembly protein	tail	A0A0M4S6V4	Salmonella_phage	63.8	1.7e-37
SQI54401.1|1250447_1251509_-	acetyltransferase family protein	NA	A0A2H4JA46	uncultured_Caudovirales_phage	27.3	8.0e-06
SQI54402.1|1252076_1253876_+	GTP-binding protein LepA	NA	E4ZFJ7	Streptococcus_phage	25.1	2.5e-23
>prophage 2
LS483475	Salmonella enterica subsp. salamae serovar Greenside strain NCTC9936 genome assembly, chromosome: 1	4732250	1707914	1716482	4732250	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
SQI55246.1|1707914_1708862_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.9e-23
SQI55248.1|1708845_1709577_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQI55249.1|1709557_1709665_-	membrane protein	NA	NA	NA	NA	NA
SQI55251.1|1709724_1710456_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQI55253.1|1710678_1712364_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.6	2.9e-276
SQI55254.1|1712360_1713080_+	two-component system response regulator	NA	NA	NA	NA	NA
SQI55256.1|1713126_1713597_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	91.0	2.7e-75
SQI55258.1|1713748_1714207_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	74.5	8.9e-55
SQI55260.1|1714448_1716482_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	2.8e-55
>prophage 3
LS483475	Salmonella enterica subsp. salamae serovar Greenside strain NCTC9936 genome assembly, chromosome: 1	4732250	1781271	1790300	4732250		Synechococcus_phage(50.0%)	9	NA	NA
SQI55373.1|1781271_1782267_+	udp-N-acetylglucosamine 4-epimerase	NA	M4QPK0	Synechococcus_phage	26.9	3.3e-09
SQI55374.1|1782266_1782383_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55375.1|1782509_1783403_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	3.6e-44
SQI55376.1|1783798_1784914_+	glycosyl transferase family 1	NA	NA	NA	NA	NA
SQI55377.1|1784935_1786054_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	65.5	1.1e-133
SQI55378.1|1786256_1786970_+	GDP-fucose synthetase	NA	A0A0E3HIR9	Synechococcus_phage	52.4	2.4e-62
SQI55379.1|1786972_1787473_+	O-antigen biosynthesis protein	NA	NA	NA	NA	NA
SQI55380.1|1787465_1788914_+	mannose-1-phosphate guanyltransferase	NA	A0A1V0SH58	Hokovirus	31.9	1.8e-56
SQI55381.1|1788917_1790300_+	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	26.2	1.0e-32
>prophage 4
LS483475	Salmonella enterica subsp. salamae serovar Greenside strain NCTC9936 genome assembly, chromosome: 1	4732250	1862379	1932993	4732250	transposase,integrase	Stenotrophomonas_phage(15.38%)	51	1881547:1881563	1928218:1928234
SQI55632.1|1862379_1863453_+|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.2	4.2e-63
SQI55634.1|1863477_1863642_+|integrase	integrase	integrase	NA	NA	NA	NA
SQI55635.1|1864236_1865124_-	DNA-binding protein	NA	NA	NA	NA	NA
SQI55637.1|1865973_1866306_-	mRNA interferase PemK	NA	NA	NA	NA	NA
SQI55639.1|1866306_1866564_-	Antitoxin PemI	NA	NA	NA	NA	NA
SQI55641.1|1866911_1867118_-	transcriptional regulatory protein	NA	A0A2I7S995	Vibrio_phage	62.7	1.3e-16
SQI55643.1|1867114_1867582_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55645.1|1867953_1869909_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55648.1|1870021_1876186_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55650.1|1876433_1877291_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55652.1|1878115_1878805_+	Insertion element IS476 uncharacterized 39.2 kDa protein	NA	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	1.0e-06
SQI55654.1|1878791_1879364_+|integrase	integrase	integrase	NA	NA	NA	NA
SQI55657.1|1879326_1879866_-	DNA-binding prophage protein	NA	NA	NA	NA	NA
SQI55659.1|1880535_1884666_+	core protein	NA	NA	NA	NA	NA
1881547:1881563	attL	GATGATAAGCATCCGGG	NA	NA	NA	NA
SQI55662.1|1884662_1885148_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55664.1|1885157_1885385_+	core protein	NA	NA	NA	NA	NA
SQI55666.1|1885740_1887255_+	core protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	47.2	1.3e-25
SQI55669.1|1887270_1887627_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55671.1|1887715_1888849_+	core protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	47.3	2.3e-27
SQI55673.1|1888867_1889203_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55674.1|1889395_1890016_+	core protein	NA	NA	NA	NA	NA
SQI55676.1|1891859_1894457_+	Putative hydroxymethyl transferase	NA	NA	NA	NA	NA
SQI55677.1|1894634_1896089_+	AMP nucleosidase	NA	NA	NA	NA	NA
SQI55679.1|1896321_1896549_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55681.1|1897000_1897252_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55682.1|1897464_1899195_-	putative periplasmic protein	NA	NA	NA	NA	NA
SQI55684.1|1899398_1900607_-|transposase	transposase IS1113	transposase	A0A218MNI5	uncultured_virus	51.3	4.2e-51
SQI55685.1|1900664_1902743_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
SQI55687.1|1903065_1903470_-|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	45.2	4.4e-13
SQI55689.1|1903993_1904314_+	nitrogen assimilation regulatory protein (pseudogene)	NA	NA	NA	NA	NA
SQI55690.1|1905000_1905363_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55692.1|1906285_1906972_+	Putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI55693.1|1907442_1910217_+	autotransporter	NA	NA	NA	NA	NA
SQI55695.1|1910288_1910852_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55696.1|1911089_1911251_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI55698.1|1911400_1911670_-	PerC transcriptional activator	NA	NA	NA	NA	NA
SQI55699.1|1912344_1914030_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI55701.1|1914014_1914686_+	Protein of uncharacterised function (DUF1175)	NA	NA	NA	NA	NA
SQI55702.1|1914709_1919239_+	MG2 domain	NA	NA	NA	NA	NA
SQI55704.1|1919242_1920889_+	Predicted secreted protein	NA	NA	NA	NA	NA
SQI55705.1|1920895_1921666_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
SQI55707.1|1921760_1923257_-	dipeptidase	NA	NA	NA	NA	NA
SQI55708.1|1923928_1924726_-	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI55710.1|1924993_1925236_-|integrase	Putative integrase	integrase	NA	NA	NA	NA
SQI55711.1|1925613_1926033_+	umuDC operon protein-like protein	NA	A0A1W6JNS2	Morganella_phage	59.7	5.0e-36
SQI55713.1|1926034_1927303_+	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	93.1	2.0e-229
SQI55714.1|1928569_1929040_-	Outer membrane protein C precursor	NA	Q1MVN1	Enterobacteria_phage	57.2	5.8e-41
1928218:1928234	attR	CCCGGATGCTTATCATC	NA	NA	NA	NA
SQI55716.1|1929080_1929752_-	outer membrane protein S1	NA	Q1MVN1	Enterobacteria_phage	70.5	1.3e-65
SQI55718.1|1930401_1930668_+	membrane protein	NA	NA	NA	NA	NA
SQI55719.1|1930792_1931509_+	metal-dependent phospho hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	28.2	2.9e-07
SQI55721.1|1931562_1932993_+	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
LS483475	Salmonella enterica subsp. salamae serovar Greenside strain NCTC9936 genome assembly, chromosome: 1	4732250	2037902	2082406	4732250	transposase,protease,integrase	uncultured_Caudovirales_phage(30.0%)	44	2041617:2041631	2048690:2048704
SQI56620.1|2037902_2038328_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	49.3	1.4e-30
SQI56624.1|2038344_2038566_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	61.8	1.4e-08
SQI56627.1|2038830_2039349_+|transposase	transposase IS1113	transposase	A0A218MNI5	uncultured_virus	45.8	2.4e-40
SQI56668.1|2039503_2041600_-	virulence protein	NA	NA	NA	NA	NA
2041617:2041631	attL	AAAATAAATTTTTTG	NA	NA	NA	NA
SQI56956.1|2041991_2042165_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI56957.1|2043424_2044117_-	Protein of uncharacterised function (DUF1076)	NA	NA	NA	NA	NA
SQI56958.1|2044598_2045051_-|integrase	putative phage integrase protein	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	69.1	1.9e-20
SQI56959.1|2045197_2045431_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI56960.1|2045548_2046025_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI56961.1|2046339_2046735_-	protein ycgX	NA	C6ZCX4	Enterobacteria_phage	32.8	2.1e-15
SQI56962.1|2047416_2048139_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
SQI56963.1|2048423_2048588_+	membrane protein	NA	NA	NA	NA	NA
SQI56964.1|2048811_2049462_+	Serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	50.0	5.5e-58
2048690:2048704	attR	CAAAAAATTTATTTT	NA	NA	NA	NA
SQI56965.1|2049480_2049672_-	putative secreted protein	NA	NA	NA	NA	NA
SQI56966.1|2049782_2050022_-	conserved domain protein	NA	NA	NA	NA	NA
SQI56967.1|2050136_2051678_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
SQI56968.1|2051653_2054287_-	mce-related protein	NA	NA	NA	NA	NA
SQI56969.1|2054255_2055539_-	Paraquat-inducible protein A	NA	NA	NA	NA	NA
SQI56970.1|2055595_2056165_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQI56971.1|2056262_2056949_+	ProP effector	NA	NA	NA	NA	NA
SQI56972.1|2056968_2059017_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
SQI56973.1|2059210_2060092_+	heat shock protein	NA	NA	NA	NA	NA
SQI56974.1|2060138_2061512_-	export protein	NA	NA	NA	NA	NA
SQI56975.1|2061576_2061684_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI56976.1|2061687_2062479_+	transcriptional regulator KdgR	NA	NA	NA	NA	NA
SQI56977.1|2062689_2062929_-	putative exported protein	NA	NA	NA	NA	NA
SQI56978.1|2063086_2063230_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI56979.1|2063300_2063588_+	putative exported protein	NA	NA	NA	NA	NA
SQI56980.1|2064825_2066571_+	penicillin-binding protein	NA	NA	NA	NA	NA
SQI56988.1|2066636_2067446_+	23S rRNA methyltransferase A	NA	NA	NA	NA	NA
SQI56995.1|2067442_2068009_-	membrane protein YebN	NA	NA	NA	NA	NA
SQI57000.1|2068418_2068877_-	membrane protein	NA	NA	NA	NA	NA
SQI57004.1|2068934_2069786_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
SQI57008.1|2069798_2070599_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA	NA
SQI57012.1|2070652_2071621_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA	NA
SQI57016.1|2072092_2073652_+	Magnesium and cobalt efflux protein CorC	NA	A0A0R6PEZ3	Moraxella_phage	44.0	2.1e-39
SQI57022.1|2073673_2075278_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA	NA
SQI57031.1|2075415_2076780_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
SQI57044.1|2077055_2077634_-	putative nudix hydrolase YeaB	NA	NA	NA	NA	NA
SQI57045.1|2077637_2079002_-	para-aminobenzoate synthase component I	NA	A0A0B5J984	Pandoravirus	35.3	3.9e-45
SQI57046.1|2079082_2079262_+	conserved domain protein	NA	NA	NA	NA	NA
SQI57047.1|2079267_2079612_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA	NA
SQI57048.1|2079742_2081653_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	32.7	5.9e-92
SQI57052.1|2081710_2082406_+|protease	metal-dependent protease-like protein, putative molecular chaperone	protease	NA	NA	NA	NA
>prophage 6
LS483475	Salmonella enterica subsp. salamae serovar Greenside strain NCTC9936 genome assembly, chromosome: 1	4732250	3398516	3457750	4732250	transposase,tRNA,protease	Bacillus_phage(25.0%)	50	NA	NA
SQI62463.1|3398516_3399434_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQI62465.1|3399430_3399883_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQI62466.1|3399883_3400300_-	copper efflux regulator	NA	NA	NA	NA	NA
SQI62467.1|3400409_3402911_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.0	6.7e-112
SQI62469.1|3403063_3403900_+	Secreted protein	NA	NA	NA	NA	NA
SQI62470.1|3404972_3405452_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQI62472.1|3405575_3407228_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQI62473.1|3407400_3408621_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI62474.1|3408835_3410512_+	transport protein	NA	NA	NA	NA	NA
SQI62476.1|3410634_3411939_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQI62478.1|3412091_3413063_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.9	1.3e-15
SQI62479.1|3413059_3414022_-	ferrochelatase	NA	NA	NA	NA	NA
SQI62481.1|3414223_3414868_-	adenylate kinase	NA	NA	NA	NA	NA
SQI62482.1|3415167_3417042_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.1	3.4e-116
SQI62484.1|3417152_3417758_-	recombination protein RecR	NA	NA	NA	NA	NA
SQI62485.1|3417757_3418087_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI62487.1|3420174_3420726_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQI62488.1|3420878_3421256_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQI62490.1|3421336_3421852_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQI62491.1|3421865_3422033_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI62493.1|3422102_3423026_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	52.1	1.2e-63
SQI62494.1|3423067_3426430_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQI62496.1|3426548_3427202_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQI62497.1|3427343_3428537_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQI62499.1|3428559_3431709_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQI62500.1|3432206_3432581_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQI62502.1|3432608_3432827_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI62504.1|3433005_3433557_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI62508.1|3433673_3434144_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI62511.1|3434344_3434605_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQI62514.1|3434829_3436380_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQI62517.1|3436688_3437000_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQI62520.1|3437032_3437602_-	lipoprotein	NA	NA	NA	NA	NA
SQI62522.1|3437816_3438677_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI62523.1|3438776_3440063_-	ammonium transporter	NA	NA	NA	NA	NA
SQI62525.1|3440094_3440433_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI62526.1|3440646_3442428_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	9.2e-39
SQI62528.1|3442420_3444193_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQI62529.1|3444233_3444692_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI62531.1|3444804_3445860_+	lyase	NA	NA	NA	NA	NA
SQI62543.1|3445909_3446728_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQI62570.1|3446828_3448529_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI62573.1|3448593_3449289_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	2.7e-87
SQI62575.1|3449394_3449793_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQI62579.1|3449896_3450271_-	competence protein ComEA	NA	NA	NA	NA	NA
SQI62582.1|3450420_3452292_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI62583.1|3452582_3452855_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQI62593.1|3453063_3455418_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	5.5e-225
SQI62599.1|3455603_3456875_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.2	1.2e-130
SQI62602.1|3457126_3457750_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 7
LS483475	Salmonella enterica subsp. salamae serovar Greenside strain NCTC9936 genome assembly, chromosome: 1	4732250	4329224	4373315	4732250	tail,plate,tRNA	Burkholderia_phage(40.0%)	45	NA	NA
SQI64000.1|4329224_4330223_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SQI64001.1|4330310_4331621_-	conjugative transfer protein	NA	NA	NA	NA	NA
SQI64002.1|4331867_4332383_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
SQI64003.1|4332481_4332694_-	stress-response protein	NA	NA	NA	NA	NA
SQI64004.1|4332712_4332841_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI64005.1|4332822_4334148_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
SQI64006.1|4334326_4334935_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
SQI64007.1|4335043_4335412_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQI64008.1|4335582_4338003_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQI64009.1|4338113_4338986_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SQI64010.1|4338999_4339497_-	chorismate lyase	NA	NA	NA	NA	NA
SQI64011.1|4339677_4340583_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
SQI64012.1|4340746_4342105_-	maltoporin	NA	NA	NA	NA	NA
SQI64013.1|4342192_4343302_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
SQI64014.1|4343663_4344854_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
SQI64015.1|4344985_4346530_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQI64016.1|4346544_4347435_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQI64017.1|4347778_4349254_+	D-xylose transporter XylE	NA	NA	NA	NA	NA
SQI64018.1|4349299_4349710_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
SQI64019.1|4349851_4351948_-	lipoprotein	NA	NA	NA	NA	NA
SQI64020.1|4351947_4352685_-	putative lipoprotein	NA	NA	NA	NA	NA
SQI64021.1|4352681_4353320_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
SQI64022.1|4353383_4353629_-	YjbE secreted protein	NA	NA	NA	NA	NA
SQI64023.1|4354069_4355719_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQI64024.1|4356107_4357457_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
SQI64025.1|4357591_4357939_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
SQI64026.1|4358515_4358803_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	2.3e-16
SQI64027.1|4358838_4359411_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	58.3	8.3e-58
SQI64028.1|4359423_4359738_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	4.9e-20
SQI64029.1|4359897_4360353_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI64030.1|4360349_4360547_+	gp12	NA	Q6QIB1	Burkholderia_phage	52.9	3.0e-07
SQI64031.1|4360536_4361952_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	69.7	2.0e-185
SQI64032.1|4361951_4362476_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	68.4	2.0e-66
SQI64033.1|4362527_4362845_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI64034.1|4363025_4365311_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	28.8	5.4e-68
SQI64035.1|4365310_4366264_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	53.1	4.2e-38
SQI64036.1|4366263_4366473_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
SQI64037.1|4366460_4367501_+	gp21	NA	A4JWL3	Burkholderia_virus	46.2	2.3e-74
SQI64038.1|4367510_4368233_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
SQI64039.1|4368330_4368690_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	1.4e-34
SQI64040.1|4368680_4369796_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.4	2.2e-99
SQI64041.1|4369788_4370421_+|tail	tail fiber protein	tail	Q6QI98	Burkholderia_phage	54.9	1.6e-22
SQI64042.1|4370423_4371569_+|tail	tail fiber domain-containing protein	tail	A0A0M3ULF6	Salmonella_phage	52.0	4.0e-51
SQI64043.1|4371581_4372097_+|tail	tail assembly chaperone gp38	tail	A0A0U2QV64	Escherichia_phage	35.0	8.0e-28
SQI64044.1|4372586_4373315_+	cytoplasmic protein	NA	A0A077SLK3	Escherichia_phage	36.4	9.6e-35
