The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	110765	118465	4883767	integrase	Morganella_phage(66.67%)	12	106996:107012	118660:118676
106996:107012	attL	TCGATGTTCTGGATCTG	NA	NA	NA	NA
SQI67330.1|110765_112895_-	P4 alpha zinc-binding domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	41.9	1.7e-124
SQI67331.1|112891_113206_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI67332.1|113212_113443_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI67333.1|113435_113645_-	phage-like protein	NA	K7PHG9	Enterobacteria_phage	53.4	1.0e-10
SQI67334.1|113641_113857_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI67335.1|113853_114729_-	Site-specific recombinase XerC	NA	NA	NA	NA	NA
SQI67336.1|114721_114910_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI67337.1|115039_115213_+	Uncharacterised protein	NA	A0A2H4JB52	uncultured_Caudovirales_phage	51.2	1.4e-05
SQI67338.1|115261_115831_-	Putative cytoplasmic protein	NA	A0A1W6JPH8	Morganella_phage	67.7	5.1e-60
SQI67339.1|115875_116076_-	Prophage CP4-57 regulatory protein (AlpA)	NA	NA	NA	NA	NA
SQI67340.1|116170_117112_-	Uncharacterised protein	NA	A0A1W6JPD1	Morganella_phage	48.3	6.4e-07
SQI67341.1|117205_118465_-|integrase	site-specific recombinase, phage integrase family protein	integrase	A0A1W6JPG6	Morganella_phage	78.8	1.5e-197
118660:118676	attR	TCGATGTTCTGGATCTG	NA	NA	NA	NA
>prophage 2
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	1193897	1202831	4883767	capsid,integrase	Enterobacteria_phage(85.71%)	11	1198666:1198681	1205446:1205461
SQI68349.1|1193897_1196231_-	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.4	0.0e+00
SQI68350.1|1196245_1196566_-	putative prophage protein	NA	NA	NA	NA	NA
SQI68351.1|1196562_1196790_-	bacteriophage protein	NA	NA	NA	NA	NA
SQI68352.1|1196786_1196981_-	phage immunity repressor protein	NA	Q7M2A7	Enterobacteria_phage	87.1	1.9e-22
SQI68353.1|1197334_1197601_-	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
SQI68354.1|1198138_1198876_+|capsid	bacteriophage capsid protein	capsid	Q7M2A2	Enterobacteria_phage	64.4	4.4e-80
1198666:1198681	attL	GCAGCAGGTGAAAGCG	NA	NA	NA	NA
SQI68355.1|1198872_1199118_+	phage transcriptional activator, Ogr/delta	NA	Q7M294	Enterobacteria_phage	76.5	6.3e-31
SQI68356.1|1199134_1199701_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	7.7e-56
SQI68357.1|1200108_1201002_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI68358.1|1201001_1201607_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI68359.1|1201637_1202831_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.4	8.2e-108
1205446:1205461	attR	CGCTTTCACCTGCTGC	NA	NA	NA	NA
>prophage 3
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	1725783	1734350	4883767	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
SQI69144.1|1725783_1726731_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.9e-23
SQI69145.1|1726714_1727446_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQI69150.1|1727426_1727534_-	membrane protein	NA	NA	NA	NA	NA
SQI69151.1|1727593_1728325_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQI69157.1|1728547_1730233_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.6	2.2e-276
SQI69158.1|1730229_1730949_+	two-component system response regulator	NA	NA	NA	NA	NA
SQI69159.1|1730995_1731466_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.4	8.0e-75
SQI69160.1|1731617_1732076_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	74.5	8.9e-55
SQI69161.1|1732316_1734350_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	2.8e-55
>prophage 4
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	1853897	1861681	4883767	transposase	Escherichia_phage(33.33%)	7	NA	NA
SQI69356.1|1853897_1855163_+|transposase	transposase IS1113	transposase	A0A218MNI5	uncultured_virus	49.2	3.5e-48
SQI69358.1|1855219_1855468_-	virulence protein MsgA	NA	S4TND2	Salmonella_phage	69.0	1.3e-15
SQI69359.1|1855914_1856220_-	Uncharacterized protein yedK	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	44.2	3.8e-17
SQI69360.1|1856754_1859031_+	thiosulfate reductase	NA	A0A077SK27	Escherichia_phage	26.8	1.9e-36
SQI69361.1|1859045_1859624_+	thiosulfate reductase electron transport protein PhsB	NA	A0A077SL61	Escherichia_phage	37.6	1.5e-22
SQI69362.1|1859620_1860385_+	thiosulfate reductase cytochrome b subunit	NA	NA	NA	NA	NA
SQI69363.1|1860514_1861681_+	penicillin-binding protein	NA	B6DZZ7	Stx2-converting_phage	87.9	1.2e-199
>prophage 5
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	1995065	2037150	4883767	portal,lysis,integrase,terminase,tail,head,holin	Escherichia_phage(34.09%)	55	1994901:1994960	2044715:2044779
1994901:1994960	attL	GATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATGG	NA	NA	NA	NA
SQI69605.1|1995065_1996076_-|integrase	integrase	integrase	K7PLZ2	Enterobacterial_phage	64.3	1.6e-125
SQI69673.1|1996075_1996303_-	phage-like protein	NA	K7PHA0	Enterobacterial_phage	43.3	7.4e-10
SQI69675.1|1996310_1996457_-	Putative bacteriophage protein	NA	A0A1B5FPC2	Escherichia_phage	79.2	6.1e-18
SQI69677.1|1996456_1996918_-	ATPase involved in DNA repair	NA	A0A1B5FPC7	Escherichia_phage	50.7	3.0e-42
SQI69678.1|1996914_1997127_-	Uncharacterised protein	NA	A0A286S2B6	Klebsiella_phage	74.3	5.4e-23
SQI69679.1|1997123_1997348_-	Uncharacterised protein	NA	A0A1B5FPG2	Escherichia_phage	69.4	1.7e-19
SQI69680.1|1997344_1997767_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69681.1|1997759_1998614_-	putative bacteriophage protein	NA	F1C5A3	Cronobacter_phage	80.0	6.4e-131
SQI69682.1|1998625_1999021_-	Uncharacterised protein	NA	A0A286S1S2	Klebsiella_phage	73.9	4.4e-50
SQI69683.1|1999010_1999247_-	Uncharacterised protein	NA	A0A286SGR4	Klebsiella_phage	65.7	1.1e-21
SQI69684.1|1999246_1999606_-	Uncharacterised protein	NA	A0A1B5FPB3	Escherichia_phage	54.6	1.2e-27
SQI69687.1|1999586_1999796_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69688.1|1999983_2000169_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69691.1|2000165_2000360_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69694.1|2000352_2000670_-	Uncharacterised protein	NA	A0A286S1T9	Klebsiella_phage	51.0	1.8e-17
SQI69697.1|2000848_2001538_-	transcriptional regulator	NA	F1C5C2	Cronobacter_phage	68.0	4.3e-85
SQI69698.1|2001662_2001911_+	DNA-binding protein	NA	A0A2H4JEY0	uncultured_Caudovirales_phage	52.9	5.6e-11
SQI69699.1|2001873_2002146_+	Uncharacterised protein	NA	A0A1B5FPB9	Escherichia_phage	71.1	2.4e-23
SQI69700.1|2002402_2002657_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69701.1|2003084_2003210_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69702.1|2003206_2004118_+	DNA-binding protein	NA	Q8W642	Enterobacteria_phage	68.5	1.3e-110
SQI69703.1|2004133_2005015_+	IstB-like ATP-binding protein	NA	Q8W641	Enterobacteria_phage	58.9	2.7e-76
SQI69704.1|2005011_2006367_+	replicative DNA helicase	NA	Q8W640	Enterobacteria_phage	69.2	4.7e-176
SQI69714.1|2006377_2006686_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69717.1|2006682_2007495_+	Phage antitermination protein Q	NA	A0A1B5FPA5	Escherichia_phage	75.2	6.8e-114
SQI69719.1|2007829_2008042_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69725.1|2010854_2011328_-	GogA	NA	Q9MBM2	Phage_Gifsy-1	98.1	3.5e-86
SQI69727.1|2011811_2012162_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.7	1.2e-46
SQI69728.1|2012148_2012598_+	Lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	3.0e-79
SQI69731.1|2012594_2013065_+|lysis	bacteriophage lysis protein	lysis	A0A0M4RD57	Salmonella_phage	81.0	2.9e-61
SQI69732.1|2013238_2013748_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69733.1|2014006_2014552_+|terminase	terminase	terminase	A0A0U2S671	Escherichia_phage	79.1	7.4e-56
SQI69734.1|2014523_2016455_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	66.0	1.7e-259
SQI69735.1|2016438_2016642_+|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
SQI69736.1|2016599_2018219_+|portal	phage portal protein, lambda family	portal	K7P6U7	Enterobacteria_phage	62.6	2.9e-188
SQI69737.1|2018208_2019705_+	scaffold protein	NA	A0A0K2FI53	Enterobacteria_phage	52.7	7.4e-98
SQI69738.1|2019717_2020065_+	Head decoration protein	NA	A0A2R9YJN3	Escherichia_phage	53.8	3.2e-20
SQI69739.1|2020119_2021148_+|head	head protein	head	C6ZCY2	Enterobacteria_phage	61.1	5.0e-114
SQI69740.1|2021205_2021565_+	DNA packaging protein	NA	NA	NA	NA	NA
SQI69741.1|2021575_2021929_+|tail	tail attachment protein	tail	A0A2R9YJJ5	Escherichia_phage	80.3	3.0e-50
SQI69742.1|2021940_2022519_+	Gifsy-1 prophagei VmtZ	NA	A0A2R9YJK4	Escherichia_phage	99.0	5.0e-79
SQI69743.1|2022515_2022911_+|tail	tail protein	tail	A0A2R9YJI2	Escherichia_phage	99.2	6.5e-70
SQI69744.1|2022918_2023659_+|tail	major tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	95.5	2.4e-126
SQI69745.1|2023674_2024097_+|tail	minor tail protein	tail	A0A0K2FIQ8	Enterobacteria_phage	92.9	3.2e-67
SQI69746.1|2024078_2024513_+|tail	Gifsy-2 prophage putative minor tail protein	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	1.5e-64
SQI69747.1|2024505_2027067_+|tail	minor tail protein	tail	A0A0K2FI43	Enterobacteria_phage	88.7	0.0e+00
SQI69748.1|2027063_2027393_+|tail	tail protein	tail	A0A2R9YJM0	Escherichia_phage	95.4	2.4e-54
SQI69749.1|2027392_2028091_+|tail	Phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	97.0	3.4e-130
SQI69750.1|2028240_2028840_+	Tail fiber component K	NA	K7PLW1	Enterobacteria_phage	95.0	6.3e-117
SQI69751.1|2028836_2029409_+|tail	phage tail assembly protein	tail	A0A0K2FJB0	Escherichia_phage	97.4	1.3e-82
SQI69752.1|2029469_2032868_+	host-specificity protein	NA	A0A0K2FI38	Escherichia_phage	85.6	0.0e+00
SQI69753.1|2032910_2033489_+|tail	Phage tail fiber protein	tail	A0A2D1UII2	Escherichia_phage	55.6	2.7e-24
SQI69754.1|2033485_2033788_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI69755.1|2033790_2035146_+	Uncharacterised protein	NA	A0A223LJ40	Erwinia_phage	55.1	5.6e-129
SQI69756.1|2036910_2037150_+|tail	Putative prophage tail fibre C-terminus	tail	A0A0P0ZEF0	Stx2-converting_phage	55.1	2.3e-17
2044715:2044779	attR	GATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCATGGGAAAA	NA	NA	NA	NA
>prophage 6
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	2783747	2809686	4883767	protease,transposase,integrase	Enterobacteria_phage(36.36%)	21	2806577:2806591	2815435:2815449
SQI70965.1|2783747_2787908_-|protease	hemoglobin protease	protease	Q9LA54	Enterobacteria_phage	42.0	1.2e-302
SQI70969.1|2788392_2790471_+	phage-like protein	NA	NA	NA	NA	NA
SQI70973.1|2790788_2791190_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
SQI71013.1|2791285_2791537_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI71016.1|2791732_2792023_+	Bor protein	NA	C6ZCX3	Enterobacteria_phage	71.9	1.2e-33
SQI71018.1|2792507_2793455_+|protease	outer membrane protease	protease	NA	NA	NA	NA
SQI71021.1|2793703_2796850_+	phage-like protein	NA	NA	NA	NA	NA
SQI71023.1|2797067_2797445_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI71027.1|2797744_2798086_+|transposase	transposase IS4 family protein	transposase	S5FM71	Shigella_phage	65.8	2.8e-21
SQI71030.1|2798411_2799599_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI71033.1|2800555_2801245_+	Chimeric type III secretion system effector protein	NA	A5LH48	Enterobacteria_phage	51.7	3.4e-58
SQI71036.1|2801654_2802314_-	type III secretion system effector protein	NA	B6DZC0	Enterobacteria_phage	38.7	4.5e-31
SQI71037.1|2802532_2802664_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI71039.1|2803042_2803252_+|integrase	prophage lambda integrase (Int(lambda))	integrase	Q77Z04	Phage_21	56.4	1.2e-09
SQI71042.1|2803584_2804043_-|transposase	transposase for IS200	transposase	I4AZI8	Saccharomonospora_phage	31.5	7.7e-14
SQI71043.1|2804238_2804406_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	88.9	1.7e-19
SQI71045.1|2804545_2804899_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI71046.1|2805289_2805760_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI71049.1|2806184_2806808_+	Gifsy-2 prophage protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	62.8	9.9e-73
2806577:2806591	attL	TGGCAGTACGCCGTT	NA	NA	NA	NA
SQI71051.1|2807114_2809157_-	SspH1	NA	Q9MBL9	Phage_Gifsy-2	46.9	9.3e-27
SQI71053.1|2809563_2809686_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	90.0	5.3e-15
2815435:2815449	attR	AACGGCGTACTGCCA	NA	NA	NA	NA
>prophage 7
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	3088654	3098039	4883767	protease,integrase	uncultured_Caudovirales_phage(14.29%)	8	3082091:3082104	3099175:3099188
3082091:3082104	attL	CTGTTCAGAAAGAT	NA	NA	NA	NA
SQI71623.1|3088654_3088864_-	phage regulatory protein	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	47.2	1.3e-08
SQI71634.1|3089059_3089920_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI71636.1|3089935_3091177_-|integrase	phage integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	7.3e-75
SQI71639.1|3091716_3093993_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.1	1.1e-164
SQI71643.1|3094023_3094344_-|protease	ATP-dependent clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
SQI71645.1|3094667_3094889_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
SQI71649.1|3094977_3096924_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	41.9	1.2e-39
SQI71650.1|3096920_3098039_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.1e-08
3099175:3099188	attR	ATCTTTCTGAACAG	NA	NA	NA	NA
>prophage 8
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	3497618	3557920	4883767	protease,transposase,tRNA	Bacillus_phage(25.0%)	51	NA	NA
SQI73013.1|3497618_3498536_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQI73015.1|3498532_3498985_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQI73017.1|3498985_3499402_-	copper efflux regulator	NA	NA	NA	NA	NA
SQI73018.1|3499511_3502013_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.0	6.7e-112
SQI73020.1|3502166_3503003_+	Secreted protein	NA	NA	NA	NA	NA
SQI73022.1|3504075_3504555_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQI73024.1|3504678_3506331_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQI73026.1|3506503_3507724_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQI73028.1|3507938_3509615_+	transport protein	NA	NA	NA	NA	NA
SQI73030.1|3509663_3510968_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQI73033.1|3511120_3512092_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.9	1.7e-15
SQI73035.1|3512088_3513051_-	ferrochelatase	NA	NA	NA	NA	NA
SQI73037.1|3513252_3513897_-	adenylate kinase	NA	NA	NA	NA	NA
SQI73039.1|3514102_3515089_-	invertase	NA	NA	NA	NA	NA
SQI73041.1|3515340_3517215_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.1	3.4e-116
SQI73043.1|3517325_3517931_-	recombination protein RecR	NA	NA	NA	NA	NA
SQI73045.1|3517930_3518260_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQI73047.1|3520347_3520899_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQI73049.1|3521051_3521429_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQI73051.1|3521509_3522025_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQI73053.1|3522038_3522206_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI73054.1|3522275_3523199_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	51.7	2.8e-63
SQI73055.1|3523240_3526603_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQI73056.1|3526721_3527375_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQI73057.1|3527516_3528710_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQI73058.1|3528732_3531882_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQI73059.1|3532379_3532754_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQI73060.1|3532781_3533000_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQI73061.1|3533178_3533730_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQI73062.1|3533845_3534316_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQI73063.1|3534516_3534777_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQI73064.1|3535001_3536552_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQI73066.1|3536860_3537172_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQI73068.1|3537204_3537774_-	lipoprotein	NA	NA	NA	NA	NA
SQI73070.1|3537988_3538849_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQI73072.1|3538948_3540235_-	ammonium transporter	NA	NA	NA	NA	NA
SQI73074.1|3540266_3540605_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQI73075.1|3540818_3542600_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	5.4e-39
SQI73077.1|3542592_3544365_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQI73079.1|3544405_3544864_-	transcriptional regulator	NA	NA	NA	NA	NA
SQI73081.1|3544976_3546032_+	lyase	NA	NA	NA	NA	NA
SQI73082.1|3546081_3546900_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQI73084.1|3547000_3548701_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI73086.1|3548765_3549461_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	2.7e-87
SQI73091.1|3549566_3549965_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQI73094.1|3550068_3550443_-	competence protein ComEA	NA	NA	NA	NA	NA
SQI73109.1|3550592_3552464_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQI73113.1|3552752_3553025_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQI73119.1|3553233_3555588_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	7.2e-225
SQI73149.1|3555773_3557045_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	2.5e-131
SQI73154.1|3557296_3557920_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 9
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	3811284	3877756	4883767	protease,tRNA,bacteriocin	uncultured_Mediterranean_phage(10.0%)	59	NA	NA
SQI73799.1|3811284_3812712_-|protease	serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.2	4.2e-26
SQI73800.1|3812841_3814359_-	Deoxyguanosinetriphosphate triphospho hydrolase subgroup 1	NA	NA	NA	NA	NA
SQI73801.1|3814443_3815142_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
SQI73802.1|3815134_3815935_+	cobalamin periplasmic binding protein	NA	NA	NA	NA	NA
SQI73803.1|3815971_3816589_+	inner membrane protein YadS	NA	NA	NA	NA	NA
SQI73804.1|3816711_3817056_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	50.5	1.0e-26
SQI73805.1|3817137_3818559_-	H(+)/Cl(-) exchange transporter ClcA	NA	NA	NA	NA	NA
SQI73806.1|3818728_3820009_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
SQI73807.1|3820066_3822049_-	iron-hydroxamate transporter permease subunit	NA	NA	NA	NA	NA
SQI73808.1|3822045_3822936_-	ferrichrome-binding periplasmic protein	NA	NA	NA	NA	NA
SQI73809.1|3822935_3823835_-	ferrichrome transport ATP-binding protein FhuC	NA	G9BWD6	Planktothrix_phage	27.8	2.3e-14
SQI73810.1|3823780_3825994_-	ferrichrome outer membrane transporter	NA	NA	NA	NA	NA
SQI73811.1|3826286_3828806_-	penicillin-binding protein 1b	NA	NA	NA	NA	NA
SQI73812.1|3828945_3831420_-	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	28.6	1.9e-34
SQI73813.1|3831447_3831978_+	2'-5' RNA ligase	NA	NA	NA	NA	NA
SQI73814.1|3831994_3832699_+	Sugar fermentation stimulation protein	NA	NA	NA	NA	NA
SQI73815.1|3832875_3833331_+	dnaK suppressor protein	NA	NA	NA	NA	NA
SQI73816.1|3833354_3834296_+|tRNA	glutamyl-Q tRNA(Asp) synthetase	tRNA	NA	NA	NA	NA
SQI73817.1|3834436_3835855_+	poly(A) polymerase	NA	H7BUW3	unidentified_phage	37.4	4.2e-26
SQI73818.1|3835851_3836331_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
SQI73819.1|3836750_3837347_+	fimbrial protein StaA	NA	NA	NA	NA	NA
SQI73820.1|3837485_3838223_+	chaperone protein EcpD	NA	NA	NA	NA	NA
SQI73821.1|3838254_3840888_+	putative outer membrane usher protein	NA	NA	NA	NA	NA
SQI73822.1|3840874_3841441_+	fimbrial protein StaD	NA	NA	NA	NA	NA
SQI73823.1|3841455_3842070_+	putative fimbrial protein	NA	NA	NA	NA	NA
SQI73824.1|3842082_3842664_+	fimbrial protein StaF	NA	NA	NA	NA	NA
SQI73825.1|3842749_3843862_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA	NA
SQI73826.1|3843979_3844774_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
SQI73827.1|3844785_3845640_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
SQI73828.1|3845734_3846115_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
SQI73829.1|3846120_3847350_-	polysaccharide deacetylase domain protein	NA	NA	NA	NA	NA
SQI73830.1|3847411_3847852_-	PTS system IIA component	NA	NA	NA	NA	NA
SQI73831.1|3847956_3848727_-	ABC transporter	NA	NA	NA	NA	NA
SQI73832.1|3848723_3849650_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.2	1.5e-21
SQI73833.1|3849758_3850421_+	carbonic anhydrase	NA	NA	NA	NA	NA
SQI73834.1|3850478_3851015_-	Hypoxanthine-guanine phosphoribosyl transferase	NA	A0A218MMB5	uncultured_virus	33.1	7.8e-18
SQI73835.1|3851220_3853611_+	glucose dehydrogenase	NA	NA	NA	NA	NA
SQI73836.1|3853688_3855284_-	Blue copper oxidase CueO	NA	A0A0C6DWA2	Mamastrovirus	59.8	2.9e-20
SQI73837.1|3855446_3855833_+	lipoprotein, PulS/OutS family	NA	NA	NA	NA	NA
SQI73838.1|3855939_3856800_+	spermidine synthase	NA	NA	NA	NA	NA
SQI73839.1|3856820_3857615_+	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA	NA
SQI73840.1|3857644_3858412_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	35.7	2.8e-29
SQI73841.1|3858421_3859405_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQI73842.1|3859394_3860666_-	membrane protein	NA	NA	NA	NA	NA
SQI73843.1|3860662_3861616_-	2-keto-3-deoxygluconate permease	NA	NA	NA	NA	NA
SQI73844.1|3861850_3862213_-	protein YacL	NA	NA	NA	NA	NA
SQI73845.1|3862401_3864999_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
SQI73846.1|3865389_3866988_+	membrane protein	NA	NA	NA	NA	NA
SQI73847.1|3867000_3867792_+	probable secreted protein	NA	NA	NA	NA	NA
SQI73848.1|3867829_3868114_-	putative secreted protein	NA	NA	NA	NA	NA
SQI73849.1|3868450_3869875_-	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.1	1.2e-41
SQI73850.1|3870076_3871966_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
SQI73851.1|3871980_3874644_-	pyruvate dehydrogenase E1 component	NA	NA	NA	NA	NA
SQI73852.1|3874803_3875568_-	pyruvate dehydrogenase complex repressor	NA	NA	NA	NA	NA
SQI73853.1|3876019_3876310_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQI73854.1|3876379_3876670_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQI73855.1|3876739_3877036_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQI73856.1|3877105_3877396_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQI73857.1|3877465_3877756_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 10
LS483477	Salmonella enterica subsp. salamae strain NCTC10310 genome assembly, chromosome: 1	4883767	4485385	4528174	4883767	tRNA,tail,plate	Burkholderia_phage(42.11%)	44	NA	NA
SQI75638.1|4485385_4486384_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SQI75640.1|4486471_4487782_-	conjugative transfer protein	NA	NA	NA	NA	NA
SQI75641.1|4488028_4488544_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
SQI75643.1|4488642_4488855_-	stress-response protein	NA	NA	NA	NA	NA
SQI75645.1|4488873_4489002_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI75647.1|4488983_4490309_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
SQI75648.1|4490487_4491096_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
SQI75650.1|4491204_4491573_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQI75652.1|4491743_4494164_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQI75654.1|4494274_4495147_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SQI75656.1|4495160_4495658_-	chorismate lyase	NA	NA	NA	NA	NA
SQI75658.1|4495838_4496756_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
SQI75660.1|4496919_4498278_-	maltoporin	NA	NA	NA	NA	NA
SQI75662.1|4498365_4499475_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
SQI75664.1|4499836_4501027_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
SQI75666.1|4501213_4502758_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQI75668.1|4502772_4503663_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQI75670.1|4504006_4505482_+	D-xylose transporter XylE	NA	NA	NA	NA	NA
SQI75672.1|4505527_4505938_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
SQI75673.1|4506079_4508176_-	lipoprotein	NA	NA	NA	NA	NA
SQI75675.1|4508175_4508913_-	putative lipoprotein	NA	NA	NA	NA	NA
SQI75677.1|4508909_4509548_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
SQI75680.1|4509611_4509857_-	YjbE secreted protein	NA	NA	NA	NA	NA
SQI75684.1|4510297_4511947_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQI75686.1|4512335_4513685_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
SQI75687.1|4513819_4514167_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
SQI75688.1|4514741_4515029_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	50.0	1.2e-17
SQI75689.1|4515064_4515637_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	57.8	1.8e-57
SQI75690.1|4515649_4515964_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	4.9e-20
SQI75691.1|4516123_4516579_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQI75692.1|4516575_4516773_+	gp12	NA	Q6QIB1	Burkholderia_phage	52.9	5.1e-07
SQI75693.1|4516762_4518178_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	69.3	6.3e-184
SQI75694.1|4518177_4518702_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	69.0	4.0e-67
SQI75695.1|4518753_4519071_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI75697.1|4519252_4521538_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	28.8	1.4e-68
SQI75699.1|4521537_4522491_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	53.1	4.2e-38
SQI75701.1|4522490_4522700_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
SQI75702.1|4522687_4523728_+	gp21	NA	A4JWL3	Burkholderia_virus	45.9	3.0e-74
SQI75704.1|4523737_4524460_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
SQI75706.1|4524557_4524917_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	1.4e-34
SQI75713.1|4524907_4526023_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.4	2.2e-99
SQI75715.1|4526015_4526648_+|tail	tail fiber protein	tail	Q6QI98	Burkholderia_phage	54.9	2.8e-22
SQI75718.1|4526650_4527796_+|tail	tail fiber domain-containing protein	tail	A0A0M3ULF6	Salmonella_phage	52.5	3.6e-52
SQI75723.1|4527808_4528174_+|tail	tail assembly chaperone gp38	tail	A0A0U2QV64	Escherichia_phage	42.1	1.2e-22
