The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	407049	425268	2902610	transposase,terminase,integrase	Staphylococcus_phage(90.48%)	27	410272:410286	425548:425562
SQI82673.1|407049_407241_-	Uncharacterised protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
SQI82674.1|407484_407781_+	30S ribosomalprotein S6p	NA	NA	NA	NA	NA
SQI82675.1|407801_408305_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
SQI82676.1|408356_408599_+	30S ribosomalprotein S18p	NA	NA	NA	NA	NA
SQI82677.1|408830_409550_-	PemK-like growth inhibitor	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
SQI82678.1|409662_410877_-	Integrase	NA	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
410272:410286	attL	AATTAGATAGTCGAA	NA	NA	NA	NA
SQI82679.1|411037_411661_-	DNA-binding protein	NA	NA	NA	NA	NA
SQI82680.1|411809_411974_+	putative DNA-binding protein	NA	NA	NA	NA	NA
SQI82681.1|411974_412247_+	pathogenicity island DNA-binding protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
SQI82682.1|412258_412432_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
SQI82683.1|412398_412545_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	93.5	6.1e-18
SQI82684.1|412602_412986_+	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
SQI82685.1|412986_413313_+	mobile element-associated protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
SQI82686.1|413377_414247_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	96.2	5.3e-165
SQI82687.1|414260_415970_+	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	92.8	8.2e-303
SQI82688.1|416279_416660_+	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
SQI82689.1|416656_417298_+	mobile element-associated protein, putative	NA	Q4ZE67	Staphylococcus_phage	92.5	4.7e-110
SQI82690.1|418005_418350_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
SQI82691.1|418380_419034_+	Uncharacterised protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
SQI82692.1|419086_419614_+	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
SQI82693.1|419616_419958_+|transposase	transposase	transposase	Q4ZE86	Staphylococcus_phage	98.2	1.1e-57
SQI82694.1|419954_420524_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
SQI82695.1|420800_421769_+	abortive infection bacteriophage resistance protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
SQI82696.1|421946_422348_+	phage protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	59.1	5.1e-22
SQI82697.1|422465_422978_+	pathogenicity island protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
SQI82698.1|423935_424943_-	abi-like family protein	NA	NA	NA	NA	NA
SQI82699.1|425019_425268_-|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	73.4	2.0e-24
425548:425562	attR	AATTAGATAGTCGAA	NA	NA	NA	NA
>prophage 2
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	732669	742106	2902610	transposase,bacteriocin	Staphylococcus_phage(57.14%)	12	NA	NA
SQI83479.1|732669_733908_+|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	99.5	6.5e-209
SQI83481.1|733934_734609_+|transposase	IS431 transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
SQI83484.1|734643_734856_-	membrane protein	NA	NA	NA	NA	NA
SQI83485.1|735193_735511_+	recombinase	NA	NA	NA	NA	NA
SQI83486.1|735571_735886_+	arsenical resistance operon repressor	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
SQI83487.1|735885_737175_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
SQI83488.1|737192_737588_+	arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
SQI83489.1|737967_738261_+|bacteriocin	bacteriocin, lactococcin 972 family protein	bacteriocin	NA	NA	NA	NA
SQI83490.1|738335_740270_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
SQI83491.1|740273_740585_+	putative DUF1093-containing protein	NA	NA	NA	NA	NA
SQI83492.1|740596_741223_+|bacteriocin	bacteriocin export ABC transporter, lactococcin 972 group family protein	bacteriocin	G3M9Y6	Bacillus_virus	33.7	6.1e-22
SQI83493.1|741584_742106_+|transposase	transposase for IS1272	transposase	A0ZS58	Staphylococcus_virus	97.7	3.6e-92
>prophage 3
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	793662	801482	2902610		Hokovirus(16.67%)	10	NA	NA
SQI83785.1|793662_794718_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
SQI83786.1|794717_795404_-	Response regulator SaeR	NA	NA	NA	NA	NA
SQI83813.1|795378_795852_-	DoxX family protein	NA	NA	NA	NA	NA
SQI83820.1|796193_796634_-	lipoprotein	NA	NA	NA	NA	NA
SQI83821.1|796913_797498_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI83822.1|797596_798310_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
SQI83823.1|798313_798733_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
SQI83824.1|798734_799403_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
SQI83825.1|799753_800347_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
SQI83826.1|800330_801482_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	813454	827592	2902610		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
SQI83867.1|813454_814513_+	histidinol-phosphate aminotransferase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
SQI83889.1|814671_815214_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
SQI83890.1|815218_815353_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI83891.1|815765_816683_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
SQI83892.1|816952_818458_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
SQI83893.1|818797_819298_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
SQI83894.1|819317_820184_-	Integral membrane domain protein	NA	NA	NA	NA	NA
SQI83895.1|820985_821384_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
SQI83898.1|821346_823452_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQI83943.1|823571_824543_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
SQI83944.1|824919_825891_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
SQI83976.1|825877_826834_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
SQI83977.1|826830_827592_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	1083313	1091786	2902610		Synechococcus_phage(33.33%)	9	NA	NA
SQI84577.1|1083313_1083796_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
SQI84580.1|1083782_1084907_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
SQI84582.1|1084910_1085615_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
SQI84585.1|1085614_1085878_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
SQI84589.1|1085879_1086551_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
SQI84592.1|1086543_1088733_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
SQI84595.1|1088711_1090196_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
SQI84599.1|1090188_1091217_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
SQI84614.1|1091219_1091786_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	1305113	1408525	2902610	protease,transposase,head,tRNA,lysis	Staphylococcus_phage(28.57%)	106	NA	NA
SQI85314.1|1305113_1306031_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
SQI85315.1|1306045_1307017_+	Riboflavin kinase / FMN adenylyltransferase	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
SQI85316.1|1307131_1307401_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
SQI85317.1|1310101_1311775_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
SQI85318.1|1312031_1314401_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	7.3e-84
SQI85319.1|1314405_1315119_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQI85320.1|1315149_1316415_+|protease	Zinc protease	protease	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
SQI85321.1|1316414_1317701_+	peptidase, M16 family	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
SQI85322.1|1317700_1318405_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA	NA
SQI85323.1|1318509_1319337_+	protein with ACT domain	NA	NA	NA	NA	NA
SQI85324.1|1319355_1319748_+	DNA-binding protein	NA	NA	NA	NA	NA
SQI85337.1|1319781_1320360_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
SQI85338.1|1320584_1321736_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
SQI85339.1|1321900_1322944_+	recombinase A	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
SQI85341.1|1323297_1324857_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
SQI85342.1|1325152_1325368_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85343.1|1325541_1326339_+	Phosphoesterase family protein	NA	NA	NA	NA	NA
SQI85395.1|1326478_1328239_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA	NA
SQI85399.1|1328239_1329106_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA	NA
SQI85401.1|1329200_1329494_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
SQI85404.1|1329627_1331172_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
SQI85407.1|1331172_1331538_+	membrane protein	NA	NA	NA	NA	NA
SQI85412.1|1331564_1332056_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
SQI85415.1|1332358_1334977_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
SQI85417.1|1334989_1336999_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
SQI85421.1|1337013_1337547_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
SQI85430.1|1338021_1338840_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
SQI85435.1|1338969_1340466_+	glycerol kinase	NA	NA	NA	NA	NA
SQI85439.1|1340623_1342297_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
SQI85443.1|1342443_1343361_+	hydrolase	NA	NA	NA	NA	NA
SQI85447.1|1343378_1344314_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
SQI85451.1|1344328_1344562_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
SQI85455.1|1344783_1345260_-	Glutathione peroxidase family protein	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
SQI85459.1|1345371_1346610_+	GTP-binding protein	NA	NA	NA	NA	NA
SQI85463.1|1346628_1347867_+	aluminum resistance protein, putative	NA	NA	NA	NA	NA
SQI85468.1|1348110_1348479_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
SQI85473.1|1348497_1349838_+	glutamine synthetase	NA	NA	NA	NA	NA
SQI85478.1|1350331_1350529_+	Uncharacterised protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
SQI85491.1|1350820_1351174_-|transposase	putative transposase	transposase	Q9MBM9	Staphylococcus_prophage	46.6	1.1e-17
SQI85500.1|1351337_1351841_-|transposase	putative transposase	transposase	NA	NA	NA	NA
SQI85501.1|1351949_1352306_-	lipoprotein	NA	NA	NA	NA	NA
SQI85502.1|1352361_1352952_-	transposon-related protein	NA	NA	NA	NA	NA
SQI85503.1|1352958_1354005_-|lysis	putative cell wall lysis protein	lysis	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
SQI85504.1|1353994_1355842_-	putative mating channel protein	NA	NA	NA	NA	NA
SQI85505.1|1355846_1357205_-	putative coupling protein	NA	A0A1S5SFB5	Streptococcus_phage	29.9	4.0e-42
SQI85506.1|1357258_1359754_-	NTPase	NA	NA	NA	NA	NA
SQI85507.1|1359788_1360172_-	transposon-related protein	NA	NA	NA	NA	NA
SQI85508.1|1360183_1360444_-	transposon-related protein	NA	NA	NA	NA	NA
SQI85579.1|1360448_1361504_-	transposon-related protein	NA	NA	NA	NA	NA
SQI85580.1|1361564_1362512_-	RstA	NA	NA	NA	NA	NA
SQI85581.1|1362831_1363134_-	transposon-related protein	NA	NA	NA	NA	NA
SQI85582.1|1363147_1363468_-	transposon-related protein	NA	NA	NA	NA	NA
SQI85583.1|1363618_1363903_-	transposon-related protein	NA	NA	NA	NA	NA
SQI85584.1|1364472_1364562_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85585.1|1364588_1364801_+	Uncharacterised protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	3.6e-19
SQI85605.1|1365097_1365304_+	Uncharacterised protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
SQI85606.1|1366508_1366694_+	Uncharacterised protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
SQI85607.1|1366905_1367853_-|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.6e-183
SQI85608.1|1368279_1368696_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85609.1|1369598_1369802_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI85610.1|1370216_1370468_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85784.1|1370672_1371194_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MF61	Staphylococcus_phage	51.1	3.1e-43
SQI85787.1|1371195_1371393_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85789.1|1371552_1372137_+|head	SPP1 gp7 family Phage head morphogenesis protein	head	NA	NA	NA	NA
SQI85792.1|1372162_1372261_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85795.1|1372463_1372661_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MFV1	Staphylococcus_phage	61.5	2.3e-15
SQI85798.1|1372989_1373184_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85800.1|1373396_1373630_+|head	putative phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	76.9	2.1e-12
SQI85801.1|1373814_1373928_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85802.1|1373940_1374189_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85803.1|1374339_1374618_+|head	SPP1 gp7 family Phage head morphogenesis protein	head	NA	NA	NA	NA
SQI85804.1|1374663_1374930_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	NA	NA	NA	NA
SQI85805.1|1374926_1375064_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85806.1|1375473_1375671_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85807.1|1376217_1377243_-	Low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
SQI85808.1|1377512_1377710_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85809.1|1377766_1379248_+	Cardiolipin synthase	NA	NA	NA	NA	NA
SQI85810.1|1379430_1380330_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	9.7e-21
SQI85811.1|1380298_1381030_+	ABC transporter permease protein	NA	NA	NA	NA	NA
SQI85812.1|1381033_1382125_+	sensor kinase	NA	NA	NA	NA	NA
SQI85813.1|1382121_1382628_+	response regulator	NA	NA	NA	NA	NA
SQI85814.1|1382740_1382929_-	membrane protein	NA	NA	NA	NA	NA
SQI85815.1|1383067_1383601_+	Thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
SQI85816.1|1383743_1384598_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85817.1|1384919_1385504_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85818.1|1385557_1386940_-	aspartate kinase	NA	NA	NA	NA	NA
SQI85819.1|1387130_1388411_+	Homoserine dehydrogenase	NA	NA	NA	NA	NA
SQI85820.1|1388416_1389478_+	Threonine synthase	NA	NA	NA	NA	NA
SQI85821.1|1389479_1390394_+	Homoserine kinase	NA	NA	NA	NA	NA
SQI85822.1|1390451_1391255_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
SQI85823.1|1391546_1391861_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI85824.1|1392079_1393534_-	gamma-aminobutyrate permease	NA	NA	NA	NA	NA
SQI85825.1|1393737_1395255_+	Catalase	NA	A0A2K9L0T1	Tupanvirus	43.8	2.7e-92
SQI85826.1|1395345_1395495_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
SQI85827.1|1395948_1396218_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
SQI85828.1|1396374_1397352_+	putative GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
SQI85829.1|1397526_1398390_+	SCP family extracellular protein	NA	U5Q0C0	Bacillus_phage	41.5	1.2e-15
SQI85830.1|1398769_1399393_-|protease	SOS-response repressor and protease LexA	protease	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
SQI85831.1|1399532_1399769_+	putative secreted protein	NA	NA	NA	NA	NA
SQI85832.1|1399904_1400144_+	Putative cytosolic protein	NA	NA	NA	NA	NA
SQI85833.1|1400264_1402253_+	Transketolase	NA	NA	NA	NA	NA
SQI85834.1|1402485_1402773_+	Uncharacterised protein family (UPF0154)	NA	NA	NA	NA	NA
SQI85835.1|1402951_1403419_+	membrane protein	NA	NA	NA	NA	NA
SQI85836.1|1403542_1404664_+	SbcD protein	NA	A0A1X9I9U0	Staphylococcus_phage	22.1	2.1e-09
SQI85837.1|1404667_1407697_+	Exonuclease SbcC	NA	NA	NA	NA	NA
SQI85838.1|1407796_1408525_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.8	4.5e-24
>prophage 7
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	1556325	1641911	2902610	protease,portal,capsid,head,tRNA,terminase,integrase,tail	Staphylococcus_phage(74.68%)	102	1591090:1591118	1636990:1637018
SQI86169.1|1556325_1557618_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
SQI86170.1|1557939_1560633_-	dinG family ATP-dependent helicase YoaA	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
SQI86171.1|1560656_1561628_-	Biotin-protein ligase / Biotin operon repressor	NA	NA	NA	NA	NA
SQI86172.1|1561614_1562817_-	poly A polymerase family protein	NA	H7BUW3	unidentified_phage	42.5	1.4e-35
SQI86173.1|1562821_1563964_-	glycosyl transferase	NA	NA	NA	NA	NA
SQI86174.1|1564207_1564525_-	Pyrophosphohydrolase, MazG family	NA	NA	NA	NA	NA
SQI86175.1|1564860_1565559_-	Neutral zinc metallopeptidase family	NA	NA	NA	NA	NA
SQI86176.1|1565612_1566200_-	membrane protein	NA	NA	NA	NA	NA
SQI86177.1|1566189_1566807_-	Putative cytosolic protein	NA	G3MAV7	Bacillus_virus	27.2	5.0e-08
SQI86178.1|1566778_1568023_-	TPR-repeat-containing protein, putative component of Menaquinone-cytochrome C reductase	NA	NA	NA	NA	NA
SQI86179.1|1568029_1569328_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
SQI86180.1|1569337_1570402_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
SQI86181.1|1570427_1571594_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	1.5e-34
SQI86182.1|1572062_1572512_-	Nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
SQI86183.1|1572603_1573563_-	Farnesyl pyrophosphate synthetase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
SQI86184.1|1573564_1574290_-	Ubiquinone/menaquinone biosynthesis methyltransferase UbiE	NA	NA	NA	NA	NA
SQI86185.1|1574292_1574865_-	heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 family protein	NA	NA	NA	NA	NA
SQI86186.1|1575295_1575568_-	DNA-binding protein II HBsu	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
SQI86187.1|1575738_1576737_-	Glycerol-3-phosphate dehydrogenase (NAD(P)+)	NA	NA	NA	NA	NA
SQI86188.1|1576753_1578064_-	GTP-binding protein EngA	NA	NA	NA	NA	NA
SQI86189.1|1578285_1579461_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
SQI86190.1|1580172_1580832_-	Cytidylate kinase	NA	NA	NA	NA	NA
SQI86195.1|1580908_1581877_+	L-asparaginase	NA	NA	NA	NA	NA
SQI86197.1|1581991_1582978_-	thioredoxin reductase	NA	NA	NA	NA	NA
SQI86200.1|1583362_1584823_-	elastin binding protein ebpS	NA	NA	NA	NA	NA
SQI86202.1|1584975_1586355_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	2.9e-56
SQI86204.1|1586344_1587298_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI86206.1|1587405_1587654_+	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
SQI86207.1|1587759_1588305_-	riboflavin transporter	NA	NA	NA	NA	NA
SQI86208.1|1588952_1589861_-	lipoprotein	NA	NA	NA	NA	NA
SQI86209.1|1589918_1590824_-	lipoprotein	NA	NA	NA	NA	NA
SQI86210.1|1590913_1591129_-	lipoprotein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
1591090:1591118	attL	AAATAAACATATCATCATAATGAGATGGT	NA	NA	NA	NA
SQI86218.1|1591850_1593305_-	amidase	NA	A0A0N6WMR3	Staphylococcus_phage	99.8	2.0e-289
SQI86230.1|1593316_1593619_-	SPP1 family prophage L54a	NA	A0A2I6PF56	Staphylococcus_phage	99.0	1.2e-47
SQI86232.1|1593754_1594090_-	hypothetical phage-related protein	NA	A0A2H4JEB7	uncultured_Caudovirales_phage	73.9	2.8e-37
SQI86235.1|1594099_1594264_-	phage protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
SQI86237.1|1594256_1594646_-	phage protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
SQI86239.1|1594645_1596112_-|tail	putative phage tail protein	tail	A7TWK6	Staphylococcus_phage	99.0	6.0e-254
SQI86242.1|1596111_1598022_-	putative minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
SQI86247.1|1598037_1598328_-	putative gp53	NA	R4WEC3	Staphylococcus_phage	100.0	2.1e-49
SQI86275.1|1598327_1599911_-|tail	prophage endopeptidase tail family protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
SQI86363.1|1599919_1600744_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
SQI86364.1|1600743_1606944_-	TP901 family prophage L54a	NA	U5U762	Staphylococcus_phage	98.6	0.0e+00
SQI86365.1|1606957_1607116_-	putative gp49	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
SQI86366.1|1607157_1607508_-	putative gp48	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
SQI86367.1|1607565_1608021_-|tail	major tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
SQI86368.1|1608112_1608754_-|tail	major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
SQI86369.1|1608788_1609184_-	phage protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
SQI86370.1|1609184_1609586_-	putative phiSLT protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
SQI86371.1|1609582_1609915_-	phage protein	NA	A0A2I6PEA5	Staphylococcus_phage	100.0	3.1e-57
SQI86372.1|1609926_1610205_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
SQI86373.1|1610273_1611437_-|capsid	putative phage capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
SQI86374.1|1611448_1612222_-|protease	phage protease	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	7.1e-137
SQI86375.1|1612205_1613444_-|portal	portal protein	portal	A0A2I6PEA6	Staphylococcus_phage	100.0	6.9e-235
SQI86376.1|1613448_1615140_-|terminase	terminase large subunit	terminase	A0A2I6PDP8	Staphylococcus_phage	99.6	0.0e+00
SQI86377.1|1615129_1615435_-|terminase	Phage terminase small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
SQI86378.1|1615560_1615875_-	HNH endonuclease family protein	NA	A0A2I6PDR3	Staphylococcus_phage	89.4	1.6e-50
SQI86379.1|1616031_1616469_-	phage regulatory protein	NA	B5WZN8	Staphylococcus_phage	100.0	2.7e-77
SQI86380.1|1616481_1617840_-	putative DNA helicase	NA	A0A1X9IH01	Staphylococcus_phage	100.0	1.6e-261
SQI86381.1|1617829_1618120_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
SQI86382.1|1618460_1620908_-	E family protein	NA	M1RZC5	Staphylococcus_phage	99.1	0.0e+00
SQI86383.1|1620960_1621161_-	putative exported phage protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
SQI86384.1|1621228_1621384_-	transcriptional activator rinB-like protein	NA	B5WZN3	Staphylococcus_phage	100.0	1.2e-19
SQI86385.1|1621373_1621610_-	phage protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
SQI86386.1|1621634_1621871_-	phage protein	NA	M1T303	Staphylococcus_phage	100.0	9.6e-37
SQI86387.1|1621887_1622061_-	Uncharacterised protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
SQI86388.1|1622097_1622634_-	dUTPase family protein	NA	S4V978	Staphylococcus_phage	98.9	2.7e-95
SQI86389.1|1622626_1622875_-	Phage protein	NA	Q9B0F3	Staphylococcus_virus	96.3	5.9e-37
SQI86390.1|1622867_1623299_-	phage protein	NA	Q4ZBT4	Staphylococcus_virus	99.3	1.6e-74
SQI86391.1|1623298_1623490_-	phage protein	NA	Q4ZBT5	Staphylococcus_virus	100.0	1.5e-27
SQI86392.1|1623486_1623879_-	phage protein	NA	A0A2I6PE39	Staphylococcus_phage	100.0	1.6e-68
SQI86393.1|1623893_1624136_-	phage family protein	NA	Q4ZBT7	Staphylococcus_virus	93.8	7.5e-37
SQI86394.1|1624150_1624351_-	phage protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
SQI86395.1|1624353_1624611_-	phage protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
SQI86396.1|1624610_1625012_-	putative phi PVL-like protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
SQI86397.1|1625011_1625197_-	phage protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
SQI86398.1|1625209_1627171_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	99.7	0.0e+00
SQI86404.1|1627229_1627787_-	phage protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
SQI86405.1|1627812_1628979_-	PD-(D/E)XK nuclease superfamily protein	NA	B5WZM3	Staphylococcus_phage	99.7	3.1e-221
SQI86406.1|1628975_1629338_-	phage protein	NA	B5WZM2	Staphylococcus_phage	99.2	3.2e-55
SQI86407.1|1629352_1629676_-	phage protein	NA	A0A2I6PE70	Staphylococcus_phage	99.1	3.2e-51
SQI86408.1|1629754_1629916_-	phage protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
SQI86409.1|1629928_1630192_-	DNA-binding protein	NA	M1SVD9	Staphylococcus_phage	98.9	9.7e-46
SQI86410.1|1630218_1630434_-	phage protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
SQI86411.1|1630488_1630854_+	phage protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
SQI86412.1|1630822_1631068_-	phage protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
SQI86413.1|1631134_1631515_+	phage protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
SQI86414.1|1631501_1631699_-	phage protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
SQI86415.1|1631768_1631981_+	putative uracil-DNA glycosylase	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
SQI86418.1|1632021_1632171_-	phage protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
SQI86419.1|1632185_1632629_-	hypothetical phage-related protein	NA	A7TWF2	Staphylococcus_phage	99.3	3.4e-75
SQI86420.1|1632646_1632871_-	regulatory protein	NA	A0A2I6PE94	Staphylococcus_phage	100.0	2.7e-36
SQI86421.1|1633032_1633413_+	regulatory protein	NA	A0A2I6PE55	Staphylococcus_phage	99.2	1.5e-63
SQI86422.1|1633434_1633893_+	pathogenicity island protein	NA	B2ZYU2	Staphylococcus_phage	100.0	1.2e-83
SQI86423.1|1633910_1634345_+	putative liporotein	NA	A0A2D1G561	Staphylococcus_phage	100.0	2.8e-26
SQI86424.1|1634373_1634769_+	Uncharacterised protein	NA	A0ZS06	Staphylococcus_virus	100.0	1.7e-70
SQI86425.1|1634967_1635591_-	Uncharacterised protein	NA	B7T0F3	Staphylococcus_virus	99.5	9.8e-105
SQI86426.1|1635700_1636906_+|integrase	integrase	integrase	M1RZA8	Staphylococcus_phage	100.0	1.0e-222
SQI86427.1|1636948_1638118_-	lipoprotein	NA	B5WZK7	Staphylococcus_phage	44.1	6.0e-39
1636990:1637018	attR	AAATAAACATATCATCATAATGAGATGGT	NA	NA	NA	NA
SQI86436.1|1638120_1638990_-	lipoprotein	NA	NA	NA	NA	NA
SQI86437.1|1639140_1639908_-	putative lipoprotein	NA	NA	NA	NA	NA
SQI86438.1|1640159_1641911_-	ResE	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
>prophage 8
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	1700459	1708771	2902610	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
SQI86505.1|1700459_1701245_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
SQI86506.1|1701370_1702261_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
SQI86507.1|1702270_1703617_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
SQI86508.1|1703730_1704831_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
SQI86509.1|1704833_1705511_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
SQI86510.1|1705641_1706748_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
SQI86511.1|1706971_1708771_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	1778207	1787250	2902610	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQI87585.1|1778207_1778726_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
SQI87586.1|1778747_1781021_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
SQI87587.1|1781223_1783503_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
SQI87588.1|1783777_1784038_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
SQI87589.1|1784056_1785196_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
SQI87616.1|1785218_1786244_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQI87617.1|1786245_1787250_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	1923665	1992572	2902610	protease,transposase,tRNA	Staphylococcus_phage(93.62%)	68	NA	NA
SQI88623.1|1923665_1930235_-	putative surface anchored protein	NA	A0A2H4PQU6	Staphylococcus_phage	88.7	1.7e-295
SQI88625.1|1930558_1930870_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
SQI88628.1|1930891_1933309_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
SQI88630.1|1933597_1934779_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
SQI88632.1|1934889_1935843_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
SQI88634.1|1935839_1936403_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
SQI88637.1|1936521_1936923_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
SQI88639.1|1937495_1938323_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
SQI88641.1|1938556_1939558_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
SQI88644.1|1939679_1940144_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
SQI88646.1|1940156_1941338_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
SQI88649.1|1941348_1941981_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
SQI88651.1|1941987_1943031_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.9e-195
SQI88653.1|1943511_1945014_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
SQI88654.1|1945656_1945971_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
SQI88656.1|1945970_1947263_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
SQI88658.1|1947349_1948204_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
SQI88660.1|1948479_1948704_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQI88661.1|1948902_1949373_+	DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
SQI88662.1|1949485_1949929_+	comK family protein	NA	NA	NA	NA	NA
SQI88663.1|1949915_1950359_-	membrane protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
SQI88665.1|1950656_1951292_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
SQI88673.1|1951458_1952079_+	membrane protein	NA	NA	NA	NA	NA
SQI88676.1|1952536_1953250_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
SQI88678.1|1953508_1953811_+	membrane protein	NA	NA	NA	NA	NA
SQI88680.1|1954065_1954431_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
SQI88683.1|1954427_1954781_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
SQI88685.1|1955030_1955864_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	2.7e-158
SQI88687.1|1956075_1956984_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
SQI88689.1|1957108_1958302_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
SQI88690.1|1958673_1960266_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
SQI88692.1|1960558_1961329_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.4e-139
SQI88694.1|1961309_1961789_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	3.0e-85
SQI88696.1|1961848_1962106_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
SQI88698.1|1962102_1963104_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
SQI88701.1|1963108_1964587_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
SQI88705.1|1964745_1965228_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	2.8e-75
SQI88735.1|1965538_1966153_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	3.6e-43
SQI88736.1|1966233_1967229_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
SQI88737.1|1967304_1967931_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
SQI88738.1|1967971_1968316_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
SQI88739.1|1968413_1968986_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
SQI88740.1|1969134_1970502_-	FRG domain-containing protein	NA	NA	NA	NA	NA
SQI88741.1|1970501_1971071_-	Domain of uncharacterised function (DUF955)	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
SQI88742.1|1971263_1971710_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
SQI88743.1|1971791_1972016_-|transposase	transposase	transposase	NA	NA	NA	NA
SQI88744.1|1972654_1973098_-	exported protein	NA	NA	NA	NA	NA
SQI88745.1|1973097_1973541_-	exported protein	NA	NA	NA	NA	NA
SQI88746.1|1973540_1973861_-	putative protein with DUF1433	NA	NA	NA	NA	NA
SQI88747.1|1974507_1976928_+	hyaluronate lyase	NA	NA	NA	NA	NA
SQI88748.1|1977053_1977431_-	exported protein	NA	NA	NA	NA	NA
SQI88769.1|1977640_1978090_-	exported protein	NA	NA	NA	NA	NA
SQI88772.1|1978132_1979743_+	pathogenicity island protein	NA	NA	NA	NA	NA
SQI88775.1|1979757_1980057_+	ESAT-6 family protein	NA	NA	NA	NA	NA
SQI88777.1|1980318_1982136_-	KAP family P-loop domain	NA	NA	NA	NA	NA
SQI88780.1|1982172_1983327_-	type I restriction modification DNA specificity protein	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
SQI88783.1|1983319_1984876_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	2.2e-286
SQI88787.1|1985238_1985790_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	98.9	8.4e-100
SQI88792.1|1985832_1985958_-|protease	serine protease SplE	protease	A0A2H4PQP1	Staphylococcus_phage	95.1	5.6e-12
SQI88793.1|1986127_1986844_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
SQI88794.1|1987007_1987232_-	serine proteinase	NA	A0A2H4PQN0	Staphylococcus_phage	55.4	3.6e-17
SQI88795.1|1987381_1987723_-	serine proteinase	NA	A0A2H4PQN5	Staphylococcus_phage	76.9	2.1e-40
SQI88796.1|1987889_1988606_-|protease	serine protease SplB	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
SQI88797.1|1988729_1989449_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
SQI88798.1|1989506_1989671_-	splB protein	NA	A0A2H4PQN0	Staphylococcus_phage	97.7	5.9e-17
SQI88799.1|1989749_1989995_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88802.1|1990463_1990979_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI88808.1|1991225_1992572_+	exported protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
>prophage 11
LS483484	Staphylococcus aureus strain NCTC13277 genome assembly, chromosome: 1	2902610	2079054	2171141	2902610	protease,holin,transposase,capsid,head,tRNA,terminase,tail	Staphylococcus_phage(89.87%)	108	NA	NA
SQI89111.1|2079054_2080482_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
SQI89114.1|2080494_2081952_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
SQI89119.1|2081953_2082256_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
SQI89125.1|2082622_2084161_+	Sodium/proline symporter	NA	NA	NA	NA	NA
SQI89130.1|2084249_2085449_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
SQI89134.1|2085461_2087465_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	9.8e-114
SQI89138.1|2087468_2089661_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.1	2.9e-135
SQI89143.1|2089657_2090350_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
SQI89148.1|2090532_2090835_-	His repressor	NA	NA	NA	NA	NA
SQI89153.1|2090943_2092239_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
SQI89158.1|2093089_2094256_+	Staphopain A precursor	NA	NA	NA	NA	NA
SQI89163.1|2094286_2094610_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
SQI89168.1|2094903_2095077_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI89172.1|2095057_2095660_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
SQI89177.1|2095929_2096751_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
SQI89180.1|2096743_2098213_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.5	1.9e-106
SQI89185.1|2098396_2099473_+	nitric-oxide synthase	NA	NA	NA	NA	NA
SQI89187.1|2099492_2100287_+	ACT domain protein	NA	NA	NA	NA	NA
SQI89191.1|2100476_2102039_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
SQI89194.1|2102243_2103341_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.6	8.7e-48
SQI89198.1|2103713_2104274_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
SQI89201.1|2104326_2105256_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
SQI89205.1|2105672_2107052_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
SQI89208.1|2107171_2108200_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
SQI89212.1|2108470_2108872_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
SQI89215.1|2108928_2109102_-	exported protein	NA	NA	NA	NA	NA
SQI89219.1|2109480_2110593_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
SQI89223.1|2110649_2111492_-	exported protein	NA	NA	NA	NA	NA
SQI89226.1|2111488_2112046_-	Predicted membrane protein	NA	NA	NA	NA	NA
SQI89230.1|2112105_2112630_-	membrane protein	NA	NA	NA	NA	NA
SQI89233.1|2112750_2113314_+	Thioredoxin	NA	NA	NA	NA	NA
SQI89237.1|2113377_2114118_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
SQI89240.1|2114117_2114990_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
SQI89243.1|2114986_2115667_-	membrane protein	NA	NA	NA	NA	NA
SQI89248.1|2115667_2116564_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
SQI89250.1|2116560_2116941_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
SQI89254.1|2117198_2117375_-	membrane protein	NA	NA	NA	NA	NA
SQI89258.1|2117914_2119201_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
SQI89265.1|2119448_2121095_-|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	7.9e-295
SQI89271.1|2121392_2123462_-	MHC class II antigen-like protein	NA	NA	NA	NA	NA
SQI89274.1|2123847_2124048_+	phospholipase C	NA	A0A1P8L6A7	Staphylococcus_phage	95.4	4.9e-26
SQI89276.1|2125222_2125573_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
SQI89279.1|2126258_2126708_+	Chemotaxis-inhibiting protein CHIPS, phage associated	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
SQI89283.1|2126802_2127099_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
SQI89286.1|2127787_2128279_-	Staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
SQI89289.1|2128470_2129226_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
SQI89292.1|2129237_2129492_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
SQI89294.1|2129988_2130762_-	enterotoxin P, phage associated	NA	A0EX09	Staphylococcus_phage	100.0	2.2e-146
SQI89297.1|2131182_2131557_-	phage protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
SQI89300.1|2131612_2131900_-	phi PVL ORF 22-like protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
SQI89304.1|2131946_2132099_-	phage protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
SQI89308.1|2132088_2135874_-	phage minor structural protein	NA	A0EX05	Staphylococcus_phage	100.0	0.0e+00
SQI89313.1|2135889_2137374_-	bacteriophage protein	NA	A0EX04	Staphylococcus_phage	100.0	4.5e-297
SQI89318.1|2137370_2141900_-|tail	TP901 family phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	99.9	0.0e+00
SQI89323.1|2141956_2142094_-	phage protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
SQI89327.1|2142144_2142495_-	phage protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
SQI89332.1|2142810_2143455_-|tail	phage major tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
SQI89335.1|2143455_2143863_-	putative bacteriophage protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
SQI89339.1|2144122_2144263_-	bacteriophage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	1.4e-14
SQI89342.1|2144259_2144622_-|head,tail	phage head-tail adaptor	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
SQI89344.1|2144605_2144890_-	Gp6 protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
SQI89346.1|2144879_2145164_-|terminase	phage terminase small subunit	terminase	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
SQI89349.1|2145183_2146329_-|capsid	Phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
SQI89350.1|2146352_2147090_-	ATP-dependent endopeptidase clp proteolytic subunit	NA	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
SQI89353.1|2147073_2148261_-	Portal protein, phage associated	NA	A0A2I6PDI1	Staphylococcus_phage	99.5	9.6e-218
SQI89356.1|2148276_2149938_-|terminase	Phage terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
SQI89360.1|2149934_2150279_-	phage protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
SQI89363.1|2150408_2150708_-	phage-associated homing endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
SQI89366.1|2150939_2151356_-	phage transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
SQI89368.1|2151383_2151584_-	phage protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
SQI89371.1|2151583_2151733_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
SQI89374.1|2151729_2152116_-	phage protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
SQI89547.1|2152112_2152319_-	phage protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
SQI89548.1|2152355_2152898_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0EWY2	Staphylococcus_phage	100.0	1.1e-96
SQI89630.1|2152890_2153073_-	Uncharacterised protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
SQI89631.1|2153062_2153314_-	Phage protein	NA	A0EWY0	Staphylococcus_phage	98.8	9.2e-38
SQI89632.1|2153306_2153471_-	Uncharacterised protein	NA	A0EWX9	Staphylococcus_phage	100.0	1.7e-24
SQI89653.1|2153485_2153728_-	phage family protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
SQI89656.1|2153731_2154100_-	Phage protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
SQI89658.1|2154212_2154422_-	Phage protein	NA	A0EWX6	Staphylococcus_phage	98.5	3.1e-31
SQI89660.1|2154430_2154649_-	phage protein	NA	A0A2I6PDG4	Staphylococcus_phage	98.6	1.2e-36
SQI89662.1|2155097_2155529_-	Phage protein	NA	S4V6D4	Staphylococcus_phage	100.0	8.4e-63
SQI89664.1|2155558_2156029_-	Single-stranded DNA-binding protein, phage associated	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
SQI89667.1|2156029_2156515_-	Metallo-beta-lactamase superfamily domain protein in prophage	NA	S4SWA4	Staphylococcus_phage	100.0	9.4e-87
SQI89670.1|2156727_2157648_-	recombinase, phage RecT family protein	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
SQI89673.1|2157649_2159593_-	Uncharacterized conserved protein	NA	A0EWX0	Staphylococcus_phage	100.0	0.0e+00
SQI89676.1|2159601_2159865_-	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
SQI89677.1|2159873_2160134_-	Putative cytosolic protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
SQI89685.1|2160114_2160441_-	phage protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
SQI89686.1|2160437_2160539_-	Uncharacterised protein	NA	A0EWW6	Staphylococcus_phage	100.0	8.5e-11
SQI89688.1|2160535_2160697_-	phage protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
SQI89690.1|2160693_2161014_-	Uncharacterized protein conserved in bacteria	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
SQI89693.1|2161072_2161705_+	phage protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
SQI89695.1|2161719_2161860_-	phage protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
SQI89697.1|2161890_2162088_-	Phage protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
SQI89699.1|2162103_2162856_-	antirepressor	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
SQI89701.1|2162906_2163236_+	Phage protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
SQI89704.1|2163224_2163440_-	phage protein	NA	A0EWV9	Staphylococcus_phage	100.0	6.3e-35
SQI89706.1|2163455_2163719_-	putative phage transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
SQI89708.1|2163851_2164565_+	CI-like repressor, phage associated	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
SQI89711.1|2164580_2165513_+	DNA polymerase III subunit alpha	NA	A0A2I6PEZ7	Staphylococcus_phage	99.7	1.6e-172
SQI89729.1|2165518_2165860_+	phage protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
SQI89776.1|2166063_2166246_+	Putative cytosolic protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
SQI89779.1|2166345_2166810_+	Uncharacterised protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
SQI89782.1|2166868_2167906_+	DNA integration/recombination/inversion protein	NA	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
SQI89784.1|2168092_2168788_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	99.1	1.5e-133
SQI89787.1|2169044_2170064_-	leukocidin-protein 1	NA	A0A2I6PEU3	Staphylococcus_phage	39.6	3.4e-54
SQI89790.1|2170085_2171141_-	Leukocidin S subunit	NA	A0A2I6PER8	Staphylococcus_phage	34.6	7.9e-38
