The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	2540333	580611	605143	2540333	tRNA,holin,protease	Bacillus_phage(40.0%)	25	NA	NA
SQI89461.1|580611_582135_+|tRNA	putative nucleic acid binding OB-fold tRNA /helicase-type	tRNA	NA	NA	NA	NA
SQI89462.1|582151_583690_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA	NA
SQI89463.1|583941_585519_-	ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
SQI89464.1|585834_586599_+	abortive infection family protein	NA	NA	NA	NA	NA
SQI89465.1|586621_587401_+|protease	metal-dependent membrane protease	protease	NA	NA	NA	NA
SQI89466.1|587527_588190_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	35.7	1.5e-18
SQI89467.1|588182_588959_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQI89468.1|589448_590912_-	sensor kinase	NA	W8CYF6	Bacillus_phage	22.2	5.7e-10
SQI89469.1|590904_591582_-	DNA-binding response regulator	NA	NA	NA	NA	NA
SQI89470.1|591739_591967_+	membrane protein	NA	NA	NA	NA	NA
SQI89471.1|592093_593269_+	Chloramphenicol resistance protein	NA	NA	NA	NA	NA
SQI89472.1|593425_594775_-	carboxylesterase type B	NA	NA	NA	NA	NA
SQI89473.1|594895_595492_+	molecular chaperone GroEL	NA	NA	NA	NA	NA
SQI89474.1|595655_596708_-	zinc dependent dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	24.2	5.3e-10
SQI89475.1|597094_598345_+|holin	Osmotically activated L-carnitine/choline ABC transporter ATP-binding protein OpuCA	holin	Q6GZ03	Mycoplasma_phage	51.6	1.4e-20
SQI89476.1|598344_598980_+|holin	Osmotically activated L-carnitine/choline ABC transporter permease OpuCB	holin	NA	NA	NA	NA
SQI89477.1|599002_599944_+|holin	Osmotically activated L-carnitine/choline ABC transporter substrate-binding protein OpuCC	holin	NA	NA	NA	NA
SQI89478.1|599943_600624_+|holin	Osmotically activated L-carnitine/choline ABC transporter permease OpuCD	holin	NA	NA	NA	NA
SQI89479.1|601059_601680_+	tandem five-TM protein	NA	NA	NA	NA	NA
SQI89480.1|601756_602383_+	tandem five-TM protein	NA	NA	NA	NA	NA
SQI89481.1|602452_603088_+	tandem five-TM protein	NA	NA	NA	NA	NA
SQI89482.1|603084_603396_+	EsaC protein analog	NA	A0A1X9I6T6	Streptococcus_phage	41.9	3.6e-15
SQI89483.1|603528_603762_+	tandem five-TM protein	NA	NA	NA	NA	NA
SQI89484.1|603809_604169_+	tandem five-TM protein	NA	NA	NA	NA	NA
SQI89485.1|604441_605143_-|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
>prophage 2
LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	2540333	1149272	1179525	2540333	tRNA	Staphylococcus_phage(96.15%)	32	NA	NA
SQI92943.1|1149272_1150667_+	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.5e-169
SQI92944.1|1150673_1151678_+	O-succinylbenzoate-CoA synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.7	2.3e-95
SQI92945.1|1151674_1151932_-	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
SQI92946.1|1151998_1152472_+	low G+C gram positive nudix hydrolase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	60.6	2.6e-49
SQI92947.1|1152452_1153226_+	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	5.0e-98
SQI92948.1|1153289_1154882_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	86.0	8.8e-275
SQI92949.1|1155253_1156450_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	87.4	1.7e-198
SQI92964.1|1156548_1157457_+	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
SQI92965.1|1157571_1158405_+	oxidoreductase of aldo/keto reductase family, subgroup 1	NA	A0A2H4PQR8	Staphylococcus_phage	72.6	2.1e-118
SQI92966.1|1158589_1158943_-	CrcB-like protein	NA	NA	NA	NA	NA
SQI92967.1|1158939_1159305_-	protein crcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	2.0e-33
SQI92969.1|1159373_1159679_-	membrane protein	NA	NA	NA	NA	NA
SQI92971.1|1159935_1160649_+	Transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
SQI92972.1|1160779_1161232_+	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
SQI92974.1|1161494_1161659_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQI92975.1|1161674_1162145_-	putative DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	1.6e-27
SQI92976.1|1162342_1162567_+	putative staphylococcal protein	NA	NA	NA	NA	NA
SQI92978.1|1162768_1163623_+	Autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
SQI92979.1|1164006_1165506_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	77.2	9.9e-18
SQI92980.1|1165772_1166924_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	62.9	4.6e-124
SQI92981.1|1166931_1167564_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	1.4e-77
SQI92982.1|1167576_1168758_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	75.1	8.5e-174
SQI92983.1|1168770_1169229_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
SQI92984.1|1169306_1170293_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.6	7.2e-134
SQI92985.1|1170509_1171343_+	Lysophospholipase/Monoglyceride lipase	NA	NA	NA	NA	NA
SQI92986.1|1171836_1172238_+	Repressor of toxins Rot	NA	NA	NA	NA	NA
SQI92987.1|1172288_1172852_-	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
SQI92988.1|1172848_1173802_-	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	86.1	3.2e-70
SQI92989.1|1173905_1175081_+	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	78.5	5.8e-175
SQI92990.1|1175402_1177817_+|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.1	0.0e+00
SQI92991.1|1177835_1178147_+	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
SQI92992.1|1178265_1179525_-	NAD(FAD)-utilizing dehydrogenase	NA	A0A2H4PQX1	Staphylococcus_phage	83.5	2.2e-42
>prophage 3
LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	2540333	1296242	1305261	2540333	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
SQI93178.1|1296242_1297247_+	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	3.8e-05
SQI93180.1|1297249_1298275_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
SQI93182.1|1298293_1299433_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	4.2e-85
SQI93184.1|1299451_1299712_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	2.8e-05
SQI93185.1|1299897_1302186_+	putative protein-export membrane protein	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.4	2.8e-32
SQI93187.1|1302446_1304723_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	4.3e-65
SQI93189.1|1304742_1305261_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.4e-27
>prophage 4
LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	2540333	1430932	1439629	2540333		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
SQI93850.1|1430932_1431664_+	Segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
SQI93851.1|1431656_1432190_+	Segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	3.5e-10
SQI93852.1|1432192_1432933_+	ribosomal large subunit pseudouridine synthaseB	NA	NA	NA	NA	NA
SQI93853.1|1433079_1433805_+	transcriptional regulator srrA	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
SQI93854.1|1433788_1435537_+	Staphylococcal respiratory response protein SrrB	NA	A0A1V0SGX0	Hokovirus	31.6	3.2e-20
SQI93855.1|1436260_1436803_+	substrate-specific component RibU of riboflavin ECF transporter	NA	NA	NA	NA	NA
SQI93856.1|1436944_1437193_-	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
SQI93857.1|1437303_1438263_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI93858.1|1438249_1439629_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 5
LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	2540333	1844149	1852619	2540333		Synechococcus_phage(33.33%)	9	NA	NA
SQI94928.1|1844149_1844716_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	3.4e-27
SQI94929.1|1844715_1845747_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	6.7e-66
SQI94930.1|1845739_1847224_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.8	3.2e-45
SQI94931.1|1847202_1849392_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	37.8	2.6e-136
SQI94932.1|1849384_1850056_-	phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit	NA	NA	NA	NA	NA
SQI94933.1|1850057_1850318_-	phosphoribosylformylglycinamidine synthase, PurS protein	NA	NA	NA	NA	NA
SQI94934.1|1850317_1851022_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
SQI94935.1|1851022_1852150_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQI94936.1|1852136_1852619_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	6.8e-21
>prophage 6
LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	2540333	2129550	2147347	2540333		uncultured_Caudovirales_phage(58.33%)	16	NA	NA
SQI96014.1|2129550_2130504_-	FecCD family protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.5	2.5e-06
SQI96015.1|2130490_2131474_-	FecCD family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.3	5.8e-136
SQI96016.1|2132028_2133063_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQI96017.1|2133179_2133944_-	iron ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.5	1.8e-15
SQI96018.1|2133958_2134918_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.1e-09
SQI96019.1|2134898_2135876_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
SQI96267.1|2136244_2137213_-	ribonucleotide reductase of class Ib (aerobic), beta subunit	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	7.4e-176
SQI96268.1|2137452_2139558_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
SQI96270.1|2139520_2139919_-	ribonucleotide reduction protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	4.3e-53
SQI96271.1|2140792_2141662_+	Integral membrane domain protein	NA	NA	NA	NA	NA
SQI96272.1|2141674_2142175_+	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
SQI96273.1|2142432_2143965_+	putative proton-dependent oligopeptide transport protein	NA	A0A0P0IY73	Acinetobacter_phage	34.1	2.3e-62
SQI96274.1|2144292_2145207_+	Diacylglycerol kinase catalytic domain-containing transcription regulator	NA	NA	NA	NA	NA
SQI96275.1|2145252_2145450_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI96276.1|2145523_2146054_-	5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	38.4	4.4e-29
SQI96277.1|2146291_2147347_-	aromatic amino acid aminotransferase subunit beta	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
>prophage 7
LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	2540333	2161869	2168490	2540333		Pandoravirus(16.67%)	8	NA	NA
SQI96301.1|2161869_2163021_-	para-aminobenzoate synthase	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
SQI96302.1|2163004_2163601_-	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
SQI96303.1|2163936_2164608_+	queuosine biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.9e-68
SQI96304.1|2164609_2165029_+	queuosine biosynthesis QueD, PTPS-I	NA	NA	NA	NA	NA
SQI96305.1|2165028_2165745_+	queuosine biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
SQI96306.1|2165843_2166434_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQI96307.1|2166474_2167497_-	CsbB stress response protein	NA	A0A192Y8W7	Salmonella_phage	41.9	5.4e-60
SQI96308.1|2167653_2168490_-	oxidoreductase of aldo/keto reductase family, subgroup 1	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	9.6e-63
