assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900478255.1_34211_E02	LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	1	739260-739344	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TTCCACGAACAACGCAAGTTGGGGTGG	27	1	3	739287-739317|739287-739317|739287-739317	LS483482.1_1785495-1785525|LS483482.1_781915-781945|LS483482.1_1819313-1819283	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|73aa|up_5|LS483482.1_732239_732458_+,NA|130aa|down_2|LS483482.1_741364_741754_-	NA|225aa|up_9|LS483482.1_728491_729166_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|354aa|up_8|LS483482.1_729293_730355_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|223aa|up_7|LS483482.1_730351_731020_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|318aa|up_6|LS483482.1_731110_732064_-	cd06259, YdcF-like, YdcF-like	NA|73aa|up_5|LS483482.1_732239_732458_+	NA	NA|458aa|up_4|LS483482.1_732797_734171_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|402aa|up_3|LS483482.1_734272_735478_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|184aa|up_2|LS483482.1_735919_736471_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_1|LS483482.1_736603_737251_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|655aa|up_0|LS483482.1_737263_739228_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|236aa|down_0|LS483482.1_739507_740215_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|298aa|down_1|LS483482.1_740438_741332_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|130aa|down_2|LS483482.1_741364_741754_-	NA	NA|156aa|down_3|LS483482.1_741759_742227_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|316aa|down_4|LS483482.1_742345_743293_+	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family	NA|351aa|down_5|LS483482.1_743338_744391_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|203aa|down_6|LS483482.1_744515_745124_-	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|72aa|down_7|LS483482.1_745361_745577_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|337aa|down_8|LS483482.1_746131_747142_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|218aa|down_9|LS483482.1_747217_747871_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_900478255.1_34211_E02	LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	2	1028020-1028104	2	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	CAACGCAAGTTGGGGTGGGGCCCCAACA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA|60aa|down_4|LS483482.1_1033584_1033764_+,NA|243aa|down_9|LS483482.1_1036806_1037535_+	NA|317aa|up_9|LS483482.1_1017625_1018576_+	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|495aa|up_8|LS483482.1_1018675_1020160_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|325aa|up_7|LS483482.1_1020160_1021135_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|239aa|up_6|LS483482.1_1021226_1021943_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|430aa|up_5|LS483482.1_1021955_1023245_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|48aa|up_4|LS483482.1_1023266_1023410_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|189aa|up_3|LS483482.1_1023412_1023979_-	smart00793, AgrB, Accessory gene regulator B	NA|262aa|up_2|LS483482.1_1024606_1025392_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|208aa|up_1|LS483482.1_1025526_1026150_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|503aa|up_0|LS483482.1_1026343_1027852_+	pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)	NA|247aa|down_0|LS483482.1_1028393_1029134_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|LS483482.1_1029314_1029599_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|LS483482.1_1029658_1031281_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|429aa|down_3|LS483482.1_1031824_1033111_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|60aa|down_4|LS483482.1_1033584_1033764_+	NA	NA|127aa|down_5|LS483482.1_1033989_1034370_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|296aa|down_6|LS483482.1_1034366_1035254_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|222aa|down_7|LS483482.1_1035250_1035916_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|291aa|down_8|LS483482.1_1035934_1036807_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|243aa|down_9|LS483482.1_1036806_1037535_+	NA
GCA_900478255.1_34211_E02	LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	3	1684419-1684504	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GAAATTCGACAAACAAAGCAAGTTGGGGT	29	1	1	1684448-1684475	LS483482.1_1804293-1804266	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|241aa|up_9|LS483482.1_1672801_1673524_-	PRK00358, pyrH, uridylate kinase; Provisional	NA|293aa|up_8|LS483482.1_1673660_1674539_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|263aa|up_7|LS483482.1_1674722_1675511_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|258aa|up_6|LS483482.1_1675729_1676503_-	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|468aa|up_5|LS483482.1_1676524_1677928_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|181aa|up_4|LS483482.1_1677974_1678517_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|298aa|up_3|LS483482.1_1678517_1679411_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|436aa|up_2|LS483482.1_1679542_1680850_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|690aa|up_1|LS483482.1_1680901_1682971_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|305aa|up_0|LS483482.1_1683142_1684057_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|412aa|down_0|LS483482.1_1684673_1685909_-	pfam02388, FemAB, FemAB family	NA|383aa|down_1|LS483482.1_1685922_1687071_-	pfam01476, LysM, LysM domain	NA|303aa|down_2|LS483482.1_1687266_1688175_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|down_3|LS483482.1_1688196_1689363_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|256aa|down_4|LS483482.1_1689473_1690241_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|295aa|down_5|LS483482.1_1690224_1691109_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|864aa|down_6|LS483482.1_1691365_1693957_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|869aa|down_7|LS483482.1_1693961_1696568_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_8|LS483482.1_1696769_1697120_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_9|LS483482.1_1697225_1697963_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed
GCA_900478255.1_34211_E02	LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	4	2191356-2191445	4	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	CAGCACAAAGAAATGCACCAAGCATTTCTACG	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|227aa|up_6|LS483482.1_2187172_2187853_+,NA|99aa|up_2|LS483482.1_2189573_2189870_-,NA|82aa|up_1|LS483482.1_2189995_2190241_-,NA|230aa|up_0|LS483482.1_2190659_2191349_+,NA	NA|311aa|up_9|LS483482.1_2183983_2184916_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|147aa|up_8|LS483482.1_2185140_2185581_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|291aa|up_7|LS483482.1_2185962_2186835_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|227aa|up_6|LS483482.1_2187172_2187853_+	NA	NA|149aa|up_5|LS483482.1_2187857_2188304_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_4|LS483482.1_2188319_2188886_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|181aa|up_3|LS483482.1_2188917_2189460_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|99aa|up_2|LS483482.1_2189573_2189870_-	NA	NA|82aa|up_1|LS483482.1_2189995_2190241_-	NA	NA|230aa|up_0|LS483482.1_2190659_2191349_+	NA	NA|162aa|down_0|LS483482.1_2191798_2192284_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|406aa|down_1|LS483482.1_2192285_2193503_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|285aa|down_2|LS483482.1_2193588_2194443_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|205aa|down_3|LS483482.1_2194893_2195508_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|156aa|down_4|LS483482.1_2195891_2196359_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|239aa|down_5|LS483482.1_2196358_2197075_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_6|LS483482.1_2197308_2197668_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|715aa|down_7|LS483482.1_2197811_2199956_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|81aa|down_8|LS483482.1_2200264_2200507_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|157aa|down_9|LS483482.1_2200448_2200919_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]
