The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483488	Helicobacter pylori strain NCTC11637 genome assembly, chromosome: 1	1680937	58368	69256	1680937		uncultured_Caudovirales_phage(33.33%)	9	NA	NA
SQJ01820.1|58368_60414_+	DNA helicase II	NA	A7KV33	Bacillus_phage	34.6	4.1e-91
SQJ01823.1|60410_61067_+	putative P-ring biosynthesis protein	NA	NA	NA	NA	NA
SQJ01826.1|61076_61640_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
SQJ01829.1|61639_62113_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	45.5	3.3e-28
SQJ01832.1|62114_62690_+	thymidylate kinase	NA	Q2XUX0	environmental_halophage	37.2	2.2e-10
SQJ01862.1|62677_63253_+	HP1473-transformation associated protein	NA	NA	NA	NA	NA
SQJ01865.1|63285_65325_+	type II restriction modification enzyme methyltransferase	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	57.7	2.6e-210
SQJ01868.1|65321_66515_+	type II restriction enzyme	NA	A0A2H4J4K4	uncultured_Caudovirales_phage	30.0	5.8e-05
SQJ01871.1|66580_69256_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	37.3	8.3e-60
>prophage 2
LS483488	Helicobacter pylori strain NCTC11637 genome assembly, chromosome: 1	1680937	90062	134881	1680937	transposase,protease,integrase	Catovirus(22.22%)	44	85463:85515	133584:133636
85463:85515	attL	ATCCAAACCGCTTAAAATGTTAGCGATAGCGATTTGTTCGTTTAGGGGGGGTA	NA	NA	NA	NA
SQJ01904.1|90062_91130_+|integrase	integrase/recombinase (xerD)	integrase	S5W9T9	Leptospira_phage	26.7	1.3e-08
SQJ01905.1|91446_92250_-	putative cell division protein	NA	NA	NA	NA	NA
SQJ01906.1|92221_92473_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01907.1|92604_93285_-|protease	CAAX protease	protease	NA	NA	NA	NA
SQJ01908.1|93505_94126_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01909.1|94088_94535_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01910.1|94539_95115_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01912.1|95185_97234_-	relaxase	NA	NA	NA	NA	NA
SQJ01915.1|97233_98286_-	helicase, Snf2 family	NA	NA	NA	NA	NA
SQJ01918.1|98286_98451_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01920.1|99088_99757_+	PARA protein	NA	A0A222YXS3	Escherichia_phage	34.0	4.1e-24
SQJ01921.1|99803_100181_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01922.1|100158_100824_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01923.1|100896_101688_-	Nucleotidyl transferase of uncharacterised function (DUF1814)	NA	NA	NA	NA	NA
SQJ01924.1|101657_102128_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01925.1|102182_102857_-	topoisomerase I	NA	A0A1V0SB35	Catovirus	30.9	4.9e-09
SQJ01926.1|102804_104244_-	topoisomerase I	NA	A0A1V0SB35	Catovirus	28.0	2.5e-42
SQJ01927.1|104256_104658_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01928.1|104708_104960_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01929.1|104956_105166_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01930.1|105286_113800_-	adenine specific DNA methyltransferase	NA	A0A248SL14	Klebsiella_phage	34.4	4.7e-242
SQJ01931.1|113954_114992_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01932.1|114992_115994_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01933.1|116051_116387_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01934.1|116406_117465_+	competence protein	NA	NA	NA	NA	NA
SQJ01935.1|117519_117948_-|transposase	transposase	transposase	A0A1S5REW8	Helicobacter_phage	98.6	6.6e-76
SQJ01936.1|118017_119301_+|transposase	ISHa1675 transposase B	transposase	A0A1S5REX3	Helicobacter_phage	86.2	5.5e-203
SQJ01937.1|119317_120460_+	conjugal transfer protein	NA	NA	NA	NA	NA
SQJ01938.1|120686_121313_+	conjugal transfer protein	NA	NA	NA	NA	NA
SQJ01939.1|121586_121868_-	addiction module toxin, RelE/StbE family protein	NA	NA	NA	NA	NA
SQJ01940.1|121860_122175_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01941.1|122478_124392_+	relaxase	NA	NA	NA	NA	NA
SQJ01942.1|124416_125601_-	putative lipoprotein	NA	NA	NA	NA	NA
SQJ01943.1|125632_125917_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01944.1|125998_126655_-	virC1 family protein	NA	A2I303	Vibrio_virus	24.3	8.4e-06
SQJ01945.1|126921_131139_-	adenine specific DNA methyltransferase	NA	I3PUW5	Vibrio_phage	37.9	4.9e-163
SQJ01946.1|131215_131452_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01947.1|131463_131727_-	VirB3 type IV secretion protein	NA	NA	NA	NA	NA
SQJ01948.1|131738_132023_-	conjugal transfer protein TrbC	NA	NA	NA	NA	NA
SQJ01949.1|132019_132499_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01950.1|132491_132707_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ01951.1|132709_133498_-|integrase	integrase/recombinase (XERCD family)	integrase	NA	NA	NA	NA
SQJ01952.1|133475_134117_-	type I restriction enzyme (specificity subunit)	NA	NA	NA	NA	NA
133584:133636	attR	ATCCAAACCGCTTAAAATGTTAGCGATAGCGATTTGTTCGTTTAGGGGGGGTA	NA	NA	NA	NA
SQJ01953.1|134104_134881_-|protease	CAAX protease	protease	NA	NA	NA	NA
>prophage 3
LS483488	Helicobacter pylori strain NCTC11637 genome assembly, chromosome: 1	1680937	371312	423865	1680937	tRNA,transposase,protease,integrase	Helicobacter_phage(26.67%)	57	367337:367353	426789:426805
367337:367353	attL	AGTTAGTGGGCGATGAT	NA	NA	NA	NA
SQJ03218.1|371312_372233_+|tRNA	cysteinyl-tRNA synthetase	tRNA	NA	NA	NA	NA
SQJ03219.1|373001_373724_-	transcriptional regulator	NA	NA	NA	NA	NA
SQJ03220.1|373724_374696_-	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA	NA
SQJ03223.1|374718_376050_-	histidine kinase sensor protein	NA	NA	NA	NA	NA
SQJ03225.1|376073_376751_-	response regulator	NA	W8CYM9	Bacillus_phage	31.8	2.6e-26
SQJ03228.1|376993_377482_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03230.1|377460_377724_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03231.1|377779_379048_-	collagenase	NA	Q6DW11	Phage_TP	34.2	8.3e-42
SQJ03232.1|379050_379764_-	chemotaxis protein	NA	NA	NA	NA	NA
SQJ03233.1|379838_380930_-	peptide chain release factor RF2	NA	NA	NA	NA	NA
SQJ03234.1|380990_382166_-	Molybdopterin biosynthesis protein	NA	NA	NA	NA	NA
SQJ03235.1|382175_382943_-	flagellar biosynthesis protein FliR	NA	NA	NA	NA	NA
SQJ03236.1|382936_383665_-	peptidase	NA	NA	NA	NA	NA
SQJ03237.1|384190_385090_+	putative peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
SQJ03238.1|385103_386027_+	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
SQJ03239.1|386048_386612_+	elongation factor P	NA	NA	NA	NA	NA
SQJ03240.1|387102_388347_+	DNA-cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	29.2	5.5e-30
SQJ03241.1|388333_389104_+	Uncharacterised protein	NA	S0A2X1	Cellulophaga_phage	48.1	4.0e-55
SQJ03244.1|389078_390425_+	5-methylcytosine-specific restriction enzyme B	NA	M1NSM1	Streptococcus_phage	45.2	2.4e-84
SQJ03246.1|390417_391632_+	Type II restriction enzyme	NA	Q6DMW8	Streptococcus_phage	36.4	3.2e-67
SQJ03248.1|391712_392735_-	pseudaminic acid synthase	NA	A0A1B1IVE2	uncultured_Mediterranean_phage	34.1	9.0e-31
SQJ03250.1|392739_393381_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.7	1.4e-16
SQJ03257.1|393380_394655_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
SQJ03259.1|394789_395584_+	membrane protein required for colicin V production	NA	NA	NA	NA	NA
SQJ03261.1|395593_397099_+|tRNA	lysyl-tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	40.9	4.6e-92
SQJ03262.1|397098_398349_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	1.8e-105
SQJ03263.1|398359_398902_+	DNA primase small subunit domain protein	NA	NA	NA	NA	NA
SQJ03264.1|398923_399727_+	putative inner membrane protein	NA	NA	NA	NA	NA
SQJ03266.1|400125_400677_-	Protein of uncharacterised function (DUF1524)	NA	NA	NA	NA	NA
SQJ03268.1|400732_401662_-	RloF	NA	NA	NA	NA	NA
SQJ03269.1|401706_402486_+	PZ1b protein	NA	NA	NA	NA	NA
SQJ03271.1|402505_402799_+	PZ2b protein	NA	NA	NA	NA	NA
SQJ03273.1|402805_404329_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03275.1|404352_404628_+	VirB2 type IV secretion protein	NA	NA	NA	NA	NA
SQJ03277.1|404628_404895_+	VirB3 type IV secretion protein	NA	NA	NA	NA	NA
SQJ03279.1|404887_407311_+	VirB4-like protein	NA	NA	NA	NA	NA
SQJ03281.1|407313_409347_+	DNA topoisomerase I (topA)	NA	A0A2K9L5F8	Tupanvirus	31.8	4.7e-47
SQJ03283.1|409463_410633_+	VirB8 type IV secretion protein	NA	NA	NA	NA	NA
SQJ03284.1|410632_412165_+	VirB9 type IV secretion protein	NA	NA	NA	NA	NA
SQJ03286.1|412164_412533_+	VirB10 type IV secretion protein	NA	NA	NA	NA	NA
SQJ03287.1|412529_413813_-|transposase	ISHa1675 transposase B	transposase	A0A1S5REX3	Helicobacter_phage	86.4	1.9e-203
SQJ03288.1|413882_414311_+|transposase	transposase	transposase	A0A1S5REW8	Helicobacter_phage	98.6	6.6e-76
SQJ03289.1|414397_414682_-	membrane protein	NA	NA	NA	NA	NA
SQJ03290.1|414688_414955_-	membrane protein	NA	NA	NA	NA	NA
SQJ03291.1|414955_415246_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03292.1|415242_415698_-	mobilization protein	NA	NA	NA	NA	NA
SQJ03293.1|415694_416636_-	VirB11 type IV secretion ATPase	NA	NA	NA	NA	NA
SQJ03294.1|416635_416935_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03296.1|416931_417195_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03298.1|417184_417481_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03300.1|417550_418489_-	VirB10 type IV secretion protein	NA	NA	NA	NA	NA
SQJ03302.1|418553_418982_-|transposase	transposase	transposase	A0A1S5REW8	Helicobacter_phage	98.6	6.6e-76
SQJ03304.1|419051_420335_+|transposase	ISHa1675 transposase B	transposase	A0A1S5REX3	Helicobacter_phage	85.9	2.7e-202
SQJ03305.1|420412_420691_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ03307.1|420692_421955_+	VirB6 type IV secretion protein	NA	NA	NA	NA	NA
SQJ03308.1|422028_422712_+|protease	CAAX protease	protease	NA	NA	NA	NA
SQJ03310.1|422791_423865_-|integrase	XerCD family integrase/recombinase	integrase	NA	NA	NA	NA
426789:426805	attR	ATCATCGCCCACTAACT	NA	NA	NA	NA
>prophage 4
LS483488	Helicobacter pylori strain NCTC11637 genome assembly, chromosome: 1	1680937	1296684	1303879	1680937	coat,transposase	Aureococcus_anophage(28.57%)	10	NA	NA
SQJ09555.1|1296684_1297017_+	type II DNA modification enzyme (methyltransferase)	NA	A0A076FFV0	Aureococcus_anophage	43.1	4.4e-11
SQJ09556.1|1296985_1298269_-|transposase	ISHa1675 transposase B	transposase	A0A1S5REX3	Helicobacter_phage	86.4	1.9e-203
SQJ09557.1|1298338_1298767_+|transposase	transposase	transposase	A0A1S5REW8	Helicobacter_phage	98.6	6.6e-76
SQJ09558.1|1298844_1299531_+	type II DNA modification enzyme (methyltransferase)	NA	A0A076FMQ7	Aureococcus_anophage	38.9	7.4e-29
SQJ09559.1|1299530_1299839_+	Type II restriction enzyme	NA	NA	NA	NA	NA
SQJ09560.1|1299843_1300080_+	Type II restriction enzyme	NA	NA	NA	NA	NA
SQJ09561.1|1300128_1300767_+	Laminin subunit alpha-2 precursor	NA	NA	NA	NA	NA
SQJ09562.1|1300763_1301891_+|coat	spore coat polysaccharide biosynthesis protein C	coat	A0A2K9L0G1	Tupanvirus	29.7	2.5e-26
SQJ09563.1|1302214_1303240_+	ribonucleotide-diphosphate reductase subunit beta	NA	A2PYN0	Cyanophage	34.3	9.3e-52
SQJ09564.1|1303249_1303879_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	38.8	2.3e-21
