The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	308919	314771	4748541	tRNA	Dickeya_phage(33.33%)	6	NA	NA
SQJ09250.1|308919_309585_-	membrane protein	NA	A0A2I7SAW6	Vibrio_phage	54.9	1.6e-57
SQJ09254.1|309664_310000_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusA	tRNA	A0A140XB86	Dickeya_phage	83.3	8.4e-10
SQJ09266.1|310023_311667_-	methyl-accepting chemotaxis citrate transducer	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.6	2.5e-14
SQJ09278.1|311866_312952_-	heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	42.2	1.4e-69
SQJ09280.1|312951_314064_-	heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	28.5	6.8e-32
SQJ09282.1|314144_314771_-	putative enzyme yhhN	NA	A0A140XAH6	Dickeya_phage	64.6	3.8e-32
>prophage 2
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	1258463	1264905	4748541		Lake_Baikal_phage(33.33%)	9	NA	NA
SQJ16670.1|1258463_1259552_+	L-cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	31.7	1.5e-31
SQJ16672.1|1259706_1260093_+	NifU-like protein	NA	A0A218MKD1	uncultured_virus	78.9	2.4e-53
SQJ16769.1|1260121_1260259_+	Iron binding protein IscA for iron-sulfur cluster assembly	NA	A0A2H4N7N5	Lake_Baikal_phage	51.2	7.3e-05
SQJ16770.1|1260239_1260446_+	Iron binding protein IscA for iron-sulfur cluster assembly	NA	A0A2H4N7M3	Lake_Baikal_phage	40.4	2.6e-06
SQJ16797.1|1260641_1261157_+	chaperone protein HscB	NA	NA	NA	NA	NA
SQJ16799.1|1261324_1263019_+	chaperone protein HscA	NA	F2Y2E1	Organic_Lake_phycodnavirus	39.3	3.0e-95
SQJ16801.1|1263020_1263356_+	ferredoxin	NA	NA	NA	NA	NA
SQJ16803.1|1263367_1263568_+	FeS assembly protein IscX	NA	NA	NA	NA	NA
SQJ16805.1|1263621_1264905_+	peptidase B	NA	Q6GYZ8	Mycoplasma_phage	38.2	1.2e-35
>prophage 3
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	1670358	1679529	4748541	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
SQJ18521.1|1670358_1671306_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
SQJ18553.1|1671289_1672021_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQJ18670.1|1672001_1672109_-	membrane protein	NA	NA	NA	NA	NA
SQJ18674.1|1672168_1672900_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQJ18678.1|1673122_1674808_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
SQJ18682.1|1674804_1675524_+	two-component system response regulator	NA	NA	NA	NA	NA
SQJ18686.1|1675570_1676038_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
SQJ18690.1|1676094_1676625_-	lipoprotein	NA	NA	NA	NA	NA
SQJ18694.1|1676796_1677255_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
SQJ18698.1|1677495_1679529_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.4e-54
>prophage 4
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	1970892	2013023	4748541	integrase,protease,transposase	Moraxella_phage(30.0%)	45	1964357:1964371	2004244:2004258
1964357:1964371	attL	TACGCCGCTGGATGT	NA	NA	NA	NA
SQJ21241.1|1970892_1971162_-|integrase	phage integrase protein	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	53.5	1.9e-17
SQJ21243.1|1971743_1973186_+	leucine-rich repeat protein	NA	Q9MBL9	Phage_Gifsy-2	67.2	1.6e-17
SQJ21244.1|1973131_1973929_+	leucine-rich repeat protein	NA	NA	NA	NA	NA
SQJ21246.1|1973958_1974258_+|transposase	transposase, Mutator family protein	transposase	A0A218MNI5	uncultured_virus	57.1	2.9e-14
SQJ21248.1|1974220_1974559_+|transposase	transposase	transposase	NA	NA	NA	NA
SQJ21249.1|1975650_1976070_+	acetyltransferase	NA	NA	NA	NA	NA
SQJ21251.1|1976456_1976933_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ21252.1|1977261_1977657_-	protein ycgX	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
SQJ21254.1|1978341_1979064_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
SQJ21256.1|1979348_1979513_+	membrane protein	NA	NA	NA	NA	NA
SQJ21258.1|1979738_1980386_+	Serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	1.4e-58
SQJ21260.1|1980404_1980596_-	putative secreted protein	NA	NA	NA	NA	NA
SQJ21262.1|1980706_1980946_-	conserved domain protein	NA	NA	NA	NA	NA
SQJ21264.1|1981060_1981447_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
SQJ21265.1|1981443_1982604_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
SQJ21266.1|1982579_1985213_-	mce-related protein	NA	NA	NA	NA	NA
SQJ21267.1|1985181_1986465_-	Paraquat-inducible protein A	NA	NA	NA	NA	NA
SQJ21268.1|1986521_1987091_+	GAF domain-containing protein	NA	NA	NA	NA	NA
SQJ21269.1|1987188_1987875_+	ProP effector	NA	NA	NA	NA	NA
SQJ21270.1|1987894_1988893_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	29.4	2.3e-31
SQJ21271.1|1989004_1989943_+|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	41.1	2.9e-36
SQJ21272.1|1990135_1991017_+	heat shock protein	NA	NA	NA	NA	NA
SQJ21273.1|1991064_1992438_-	export protein	NA	NA	NA	NA	NA
SQJ21274.1|1992502_1992610_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ21276.1|1992613_1993405_+	transcriptional regulator KdgR	NA	NA	NA	NA	NA
SQJ21278.1|1994013_1994157_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQJ21279.1|1994227_1994515_+	putative exported protein	NA	NA	NA	NA	NA
SQJ21280.1|1995748_1996186_+	penicillin-binding protein	NA	NA	NA	NA	NA
SQJ21281.1|1996142_1997495_+	penicillin-binding protein	NA	NA	NA	NA	NA
SQJ21282.1|1997560_1998370_+	23S rRNA methyltransferase A	NA	NA	NA	NA	NA
SQJ21283.1|1998366_1998933_-	membrane protein YebN	NA	NA	NA	NA	NA
SQJ21284.1|1999342_1999801_-	membrane protein	NA	NA	NA	NA	NA
SQJ21285.1|1999858_2000710_-	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
SQJ21286.1|2000722_2001523_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA	NA
SQJ21287.1|2001575_2002544_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA	NA
SQJ21288.1|2003464_2004577_+	Magnesium and cobalt efflux protein CorC	NA	A0A0R6PEZ3	Moraxella_phage	39.2	2.6e-07
2004244:2004258	attR	TACGCCGCTGGATGT	NA	NA	NA	NA
SQJ21289.1|2004598_2006200_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA	NA
SQJ21290.1|2006337_2007702_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
SQJ21291.1|2007965_2008544_-	putative nudix hydrolase YeaB	NA	NA	NA	NA	NA
SQJ21292.1|2008547_2009912_-	para-aminobenzoate synthase component I	NA	A0A0B5J984	Pandoravirus	35.0	3.3e-44
SQJ21293.1|2009992_2010172_+	conserved domain protein	NA	NA	NA	NA	NA
SQJ21294.1|2010177_2010522_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA	NA
SQJ21334.1|2010809_2011202_+	ATP-dependent helicase	NA	NA	NA	NA	NA
SQJ21337.1|2012069_2012576_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	44.6	1.9e-34
SQJ21340.1|2012633_2013023_+|protease	metal-dependent protease-like protein, putative molecular chaperone	protease	NA	NA	NA	NA
>prophage 5
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	2373069	2382741	4748541		Escherichia_phage(66.67%)	10	NA	NA
SQJ22613.1|2373069_2374284_-	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	28.7	2.0e-45
SQJ22616.1|2374405_2374741_-	UPF0060 membrane protein CKO_01576	NA	A0A218MNG8	uncultured_virus	52.4	1.3e-23
SQJ22618.1|2374884_2375226_+	putative secreted protein	NA	NA	NA	NA	NA
SQJ22620.1|2375261_2375822_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
SQJ22622.1|2375862_2376582_-	lipoprotein	NA	NA	NA	NA	NA
SQJ22624.1|2376679_2376985_+	outer membrane protein	NA	NA	NA	NA	NA
SQJ22626.1|2377141_2379580_+	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	49.7	7.3e-220
SQJ22628.1|2379678_2382114_+	dimethyl sulfoxide reductase subunit	NA	A0A077SK27	Escherichia_phage	48.1	1.3e-205
SQJ22630.1|2382124_2382406_+	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.9	3.5e-25
SQJ22632.1|2382372_2382741_+	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.2	6.5e-40
>prophage 6
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	2528503	2538316	4748541		Hokovirus(50.0%)	16	NA	NA
SQJ23667.1|2528503_2529607_+	short chain acyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	23.9	6.4e-06
SQJ23668.1|2529611_2530145_+	short chain acyl-CoA synthetase	NA	A0A1V0SBX8	Catovirus	44.2	1.6e-10
SQJ23669.1|2530289_2531171_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	49.6	3.9e-75
SQJ23670.1|2531193_2531421_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	84.4	9.6e-10
SQJ23671.1|2531407_2531845_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	39.1	2.3e-07
SQJ23672.1|2531922_2532393_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	44.9	6.2e-19
SQJ23673.1|2532358_2532568_-	phosphoenolpyruvate synthase	NA	NA	NA	NA	NA
SQJ23674.1|2532903_2533191_+	PEP synthetase regulatory protein	NA	NA	NA	NA	NA
SQJ23675.1|2533190_2533736_+	PEP synthetase regulatory protein	NA	NA	NA	NA	NA
SQJ23676.1|2533891_2534938_+	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase	NA	S4W5F1	Pandoravirus	47.6	9.7e-81
SQJ23677.1|2535094_2535286_+	Hemin uptake protein	NA	NA	NA	NA	NA
SQJ23678.1|2535320_2535893_-	Selenoprotein O and cysteine-containing	NA	NA	NA	NA	NA
SQJ23679.1|2535853_2536195_-	Selenoprotein O and cysteine-containing	NA	NA	NA	NA	NA
SQJ23680.1|2536163_2536763_-	Selenoprotein O and cysteine-containing	NA	NA	NA	NA	NA
SQJ23681.1|2536824_2537538_-	cyclic di-GMP regulator CdgR	NA	NA	NA	NA	NA
SQJ23682.1|2537851_2538316_-	lipoprotein	NA	A0A1V0DZX6	Clostridioides_phage	39.4	2.0e-14
>prophage 7
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	2778073	2803686	4748541	head,tail	Burkholderia_phage(45.83%)	39	NA	NA
SQJ24849.1|2778073_2778631_+	virulence protein	NA	Q9MBM0	Phage_Gifsy-2	68.1	5.4e-38
SQJ24851.1|2778600_2778714_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24852.1|2779170_2779470_-|tail	bacteriophage tail protein	tail	A0A0K1YAB6	Cronobacter_phage	42.6	4.1e-16
SQJ24853.1|2779702_2780500_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24854.1|2780510_2781005_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24855.1|2781054_2781615_-	Uncharacterised protein	NA	Q6IWQ6	Burkholderia_phage	41.2	4.3e-19
SQJ24856.1|2781611_2782295_-	Protein of uncharacterised function (DUF2612)	NA	Q6IWQ4	Burkholderia_phage	42.2	1.4e-43
SQJ24857.1|2782291_2783413_-	bacteriophage protein	NA	Q6IWQ3	Burkholderia_phage	46.2	8.9e-64
SQJ24858.1|2783369_2783489_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24860.1|2783475_2783826_-	Uncharacterised protein	NA	Q6IWQ2	Burkholderia_phage	34.5	8.7e-10
SQJ24861.1|2783829_2784486_-	bacteriophage protein	NA	Q6IWQ1	Burkholderia_phage	50.6	2.5e-42
SQJ24863.1|2784478_2785303_-	Uncharacterised protein	NA	Q6IWQ0	Burkholderia_phage	44.8	6.8e-53
SQJ24865.1|2785295_2785616_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24866.1|2785615_2786158_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24867.1|2786157_2786967_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24869.1|2786935_2787238_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24871.1|2787550_2787922_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24872.1|2787966_2788518_-	Uncharacterised protein	NA	Q6IWV4	Burkholderia_phage	56.2	5.4e-30
SQJ24874.1|2788563_2788962_-	Uncharacterised protein	NA	Q6IWV3	Burkholderia_phage	51.2	7.1e-32
SQJ24876.1|2788971_2790519_-	Protein of uncharacterised function (DUF3383)	NA	A1Z015	Burkholderia_virus	42.0	1.3e-97
SQJ24878.1|2790521_2791061_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24879.1|2791053_2791422_-	Uncharacterised protein	NA	A0A0F6YPT0	Pseudomonas_phage	36.1	8.3e-19
SQJ24881.1|2791418_2791895_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ24882.1|2791894_2792347_-	bacteriophage protein	NA	A0A0U2CI04	Pseudomonas_phage	45.5	3.0e-26
SQJ24884.1|2792349_2792727_-	Uncharacterised protein	NA	Q6IWU7	Burkholderia_phage	39.6	2.4e-13
SQJ24886.1|2792736_2793849_-	Uncharacterized protein conserved in bacteria	NA	I6ZXX2	Escherichia_phage	47.2	6.7e-88
SQJ24887.1|2793860_2794355_-	Uncharacterised protein	NA	Q6IWU5	Burkholderia_phage	32.1	1.5e-10
SQJ24889.1|2794354_2795542_-	Uncharacterized protein conserved in bacteria	NA	A0A2H5BG39	Pseudoalteromonas_phage	42.7	2.5e-48
SQJ25027.1|2795538_2796330_-|head	phage head morphogenesis protein, SPP1 gp7 family	head	Q6IWU3	Burkholderia_phage	40.0	1.4e-50
SQJ25028.1|2796295_2797861_-	Phage-associated protein	NA	A0A2H4P6S9	Pseudomonas_phage	49.6	2.1e-111
SQJ25030.1|2797860_2799495_-	Transposase and inactivated derivatives	NA	H9C191	Pectobacterium_phage	70.6	2.2e-236
SQJ25032.1|2799494_2799881_-	Uncharacterised protein	NA	C7U0V7	Enterobacteria_phage	32.8	1.8e-08
SQJ25039.1|2799846_2800548_-	ParB-like nuclease domain	NA	A0A1J0ME72	Mycobacterium_phage	30.4	2.2e-20
SQJ25041.1|2800611_2801814_-	Uncharacterised protein	NA	A0A2P1JQE9	Mycobacterium_phage	28.9	4.2e-35
SQJ25042.1|2801943_2802138_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25044.1|2802176_2802542_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25045.1|2802889_2803084_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25046.1|2803094_2803286_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25048.1|2803296_2803686_-	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK precursor	NA	A0A060DAL8	Salmonella_phage	77.2	7.8e-52
>prophage 8
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	2810130	2825955	4748541	integrase	Salmonella_phage(35.71%)	20	2817429:2817442	2829901:2829914
SQJ25065.1|2810130_2810415_+	DNA breaking-rejoining protein	NA	K7PGY4	Enterobacteria_phage	63.3	2.6e-12
SQJ25067.1|2810611_2811457_+	Uncharacterised protein	NA	I6XKU1	Burkholderia_virus	35.3	3.4e-52
SQJ25077.1|2811607_2814538_+	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	74.6	0.0e+00
SQJ25079.1|2814549_2815530_+	Gifsy-2 prophage RecT	NA	H6WRX0	Salmonella_phage	63.9	7.2e-102
SQJ25085.1|2815697_2816042_+	Iron-sulfur cluster regulator IscR	NA	NA	NA	NA	NA
SQJ25114.1|2816038_2816347_+	Uncharacterised protein	NA	A0A222YXX1	Escherichia_phage	69.7	1.4e-32
SQJ25218.1|2816343_2816766_+	Eae protein	NA	A0A0N6WGF1	Salmonella_phage	73.1	2.6e-40
SQJ25219.1|2816762_2817020_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25220.1|2817016_2817352_+	Uncharacterised protein	NA	A0A077SLK5	Escherichia_phage	62.3	2.1e-13
2817429:2817442	attL	CTGGGGCTGGCGAA	NA	NA	NA	NA
SQJ25221.1|2817898_2818615_+	prophage protein	NA	A0A0M4RCP6	Salmonella_phage	65.8	1.4e-86
SQJ25222.1|2818629_2819244_+	hypothetical bacteriophage protein	NA	A0A075B8H2	Enterobacteria_phage	85.5	1.7e-32
SQJ25223.1|2819231_2819417_+	Protein of uncharacterised function (DUF1187)	NA	A0A0U2QL97	Escherichia_phage	62.3	4.4e-13
SQJ25224.1|2819416_2819674_+	putative DNA methyl transferase	NA	NA	NA	NA	NA
SQJ25225.1|2819670_2821548_+	methyltransferase	NA	H9C171	Pectobacterium_phage	53.2	6.0e-190
SQJ25226.1|2821544_2821907_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25227.1|2821987_2822212_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25245.1|2822171_2823227_+|integrase	site-specific recombinase, phage integrase family protein	integrase	A0A192Y7M7	Salmonella_phage	50.5	1.7e-85
SQJ25246.1|2823249_2824134_+|integrase	prophage lambda integrase (Int(lambda))	integrase	H9C178	Pectobacterium_phage	40.4	8.6e-62
SQJ25247.1|2824223_2824511_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25248.1|2825430_2825955_+	Putative TEGT family carrier/transport protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	53.2	5.1e-38
2829901:2829914	attR	TTCGCCAGCCCCAG	NA	NA	NA	NA
>prophage 9
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	2906024	2917045	4748541	tRNA	Escherichia_phage(50.0%)	8	NA	NA
SQJ25358.1|2906024_2906642_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
SQJ25359.1|2906652_2906886_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	60.9	9.2e-16
SQJ25360.1|2906830_2907130_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	NA	NA	NA	NA
SQJ25361.1|2907084_2909097_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	47.4	2.4e-160
SQJ25362.1|2909335_2910628_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.5	8.6e-95
SQJ25363.1|2910886_2912110_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	39.9	4.8e-71
SQJ25364.1|2912238_2912850_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
SQJ25365.1|2912992_2917045_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.9e-88
>prophage 10
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	3335344	3394488	4748541	tRNA,transposase,protease	Bacillus_phage(20.0%)	60	NA	NA
SQJ25840.1|3335344_3336262_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQJ25841.1|3336258_3336711_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQJ25842.1|3336711_3337128_-	copper efflux regulator	NA	NA	NA	NA	NA
SQJ25843.1|3337237_3339739_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	37.2	5.1e-112
SQJ25844.1|3339892_3340468_+	Secreted protein	NA	NA	NA	NA	NA
SQJ25845.1|3341800_3342280_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQJ25846.1|3342396_3344049_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQJ25847.1|3344372_3345443_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQJ25848.1|3345657_3347334_+	transport protein	NA	NA	NA	NA	NA
SQJ25849.1|3347382_3348732_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQJ25850.1|3348839_3349811_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
SQJ25851.1|3349807_3350770_-	ferrochelatase	NA	NA	NA	NA	NA
SQJ25852.1|3350998_3351643_-	adenylate kinase	NA	NA	NA	NA	NA
SQJ25853.1|3351884_3353741_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	3.3e-116
SQJ25854.1|3353815_3354013_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25855.1|3354056_3354476_-	recombination protein RecR	NA	NA	NA	NA	NA
SQJ25856.1|3354475_3354805_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQJ25857.1|3355629_3356778_-	DNA polymerase III subunits gamma and tau	NA	A0A1L2BWV7	Bacteriophage	41.5	1.4e-43
SQJ25858.1|3356891_3357443_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQJ25859.1|3357595_3357973_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQJ25860.1|3358053_3358569_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQJ25861.1|3358582_3358750_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQJ25862.1|3358819_3359755_+|transposase	ISNCY transposase	transposase	Q2A0A7	Sodalis_phage	51.2	8.2e-63
SQJ25863.1|3359796_3363159_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQJ25864.1|3363277_3363931_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQJ25865.1|3364072_3365266_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQJ25866.1|3365288_3368438_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQJ25867.1|3368934_3369309_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQJ25868.1|3369336_3369555_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQJ25869.1|3369733_3370276_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQJ25870.1|3370402_3370873_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQJ25871.1|3370928_3371069_-	LSU ribosomal protein L36p	NA	NA	NA	NA	NA
SQJ25872.1|3371074_3371335_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQJ25873.1|3371559_3373110_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQJ25874.1|3373418_3373730_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA	NA
SQJ25875.1|3373762_3374032_-	lipoprotein	NA	NA	NA	NA	NA
SQJ25876.1|3374018_3374333_-	lipoprotein	NA	NA	NA	NA	NA
SQJ25877.1|3374547_3374895_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQJ25878.1|3374857_3375055_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQJ25879.1|3375508_3376795_-	ammonium transporter	NA	NA	NA	NA	NA
SQJ25880.1|3376826_3377165_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQJ25881.1|3377377_3378175_-	Multidrug resistance-like ATP-binding protein mdlB	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.6	6.0e-22
SQJ25882.1|3378134_3379160_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	24.0	5.0e-13
SQJ25883.1|3379152_3380925_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
SQJ25884.1|3380965_3381424_-	transcriptional regulator	NA	NA	NA	NA	NA
SQJ25885.1|3381536_3381959_+	lyase	NA	NA	NA	NA	NA
SQJ25886.1|3381930_3382158_+	lyase	NA	NA	NA	NA	NA
SQJ25887.1|3382154_3382595_+	lyase	NA	NA	NA	NA	NA
SQJ25888.1|3382643_3383462_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQJ25889.1|3383562_3384324_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQJ25890.1|3384223_3384421_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ25891.1|3384569_3385595_+	ABC transporter substrate-binding protein	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	72.8	5.1e-26
SQJ25892.1|3385578_3386025_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.3	4.8e-53
SQJ25893.1|3386131_3386530_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQJ25894.1|3386633_3387008_-	competence protein ComEA	NA	NA	NA	NA	NA
SQJ25895.1|3387157_3389029_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQJ25896.1|3389320_3389593_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQJ25897.1|3389801_3392156_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	1.6e-224
SQJ25898.1|3392341_3393613_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
SQJ25899.1|3393864_3394488_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 11
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	4345610	4391057	4748541	tRNA,tail,transposase,plate,integrase	Burkholderia_phage(36.36%)	57	4364523:4364538	4373490:4373505
SQJ30569.1|4345610_4346609_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SQJ30570.1|4346696_4348007_-	conjugative transfer protein	NA	NA	NA	NA	NA
SQJ30603.1|4348253_4348769_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
SQJ30604.1|4348868_4349081_-	stress-response protein	NA	NA	NA	NA	NA
SQJ30605.1|4349209_4350535_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
SQJ30606.1|4350713_4351322_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
SQJ30607.1|4351430_4351799_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQJ30608.1|4351969_4354207_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQJ30609.1|4354172_4354391_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQJ30610.1|4354489_4355362_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SQJ30611.1|4355375_4355873_-	chorismate lyase	NA	NA	NA	NA	NA
SQJ30612.1|4356053_4356971_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
SQJ30613.1|4357134_4358493_-	maltoporin	NA	NA	NA	NA	NA
SQJ30614.1|4358581_4359691_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
SQJ30615.1|4360052_4361243_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
SQJ30616.1|4361374_4362919_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQJ30617.1|4362933_4363824_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQJ30618.1|4363989_4364400_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
4364523:4364538	attL	CGCCTTATCCGGCCTG	NA	NA	NA	NA
SQJ30619.1|4364542_4366639_-	lipoprotein	NA	NA	NA	NA	NA
SQJ30620.1|4366638_4366938_-	putative lipoprotein	NA	NA	NA	NA	NA
SQJ30621.1|4366915_4367374_-	putative lipoprotein	NA	NA	NA	NA	NA
SQJ30622.1|4367370_4367964_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
SQJ30623.1|4368071_4368317_-	YjbE secreted protein	NA	NA	NA	NA	NA
SQJ30624.1|4368725_4369127_+|transposase	ISPsy11, transposase OrfA	transposase	NA	NA	NA	NA
SQJ30625.1|4369130_4369415_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ30626.1|4369750_4370101_+|integrase	integrase	integrase	NA	NA	NA	NA
SQJ30627.1|4370043_4370154_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ30628.1|4370305_4370533_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQJ30629.1|4370560_4370779_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQJ30630.1|4370775_4371246_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQJ30631.1|4371217_4371736_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQJ30632.1|4372135_4372777_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
SQJ30633.1|4372743_4373427_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
SQJ30634.1|4373557_4373905_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
4373490:4373505	attR	CGCCTTATCCGGCCTG	NA	NA	NA	NA
SQJ30635.1|4374481_4374769_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
SQJ30636.1|4374804_4375377_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	60.4	1.0e-60
SQJ30637.1|4375389_4375680_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	42.1	3.4e-07
SQJ30638.1|4375866_4376304_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQJ30639.1|4376319_4376517_+	gp12	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
SQJ30640.1|4376506_4377610_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	68.6	2.3e-133
SQJ30641.1|4377602_4377935_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	76.6	2.0e-43
SQJ30642.1|4377934_4378459_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
SQJ30643.1|4378510_4378828_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ30644.1|4379012_4381379_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	31.7	1.1e-68
SQJ30645.1|4381378_4382332_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	6.7e-36
SQJ30646.1|4382331_4382541_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
SQJ30647.1|4382528_4383572_+	gp21	NA	A4JWL3	Burkholderia_virus	45.9	3.8e-77
SQJ30648.1|4383581_4384304_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
SQJ30649.1|4384631_4384994_+	phage glucose translocase	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
SQJ30650.1|4384990_4385920_+	bactoprenol glucosyl transferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
SQJ30651.1|4385919_4387467_+	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
SQJ30652.1|4387447_4387570_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ30653.1|4387631_4387991_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
SQJ30654.1|4387981_4388095_+|plate	baseplate protein	plate	NA	NA	NA	NA
SQJ30655.1|4388051_4389098_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.7	1.0e-90
SQJ30656.1|4389090_4389723_+|tail	tail fiber protein	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
SQJ30657.1|4389725_4391057_+	gp19	NA	A0A0M3ULH6	Salmonella_phage	38.8	1.4e-76
>prophage 12
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	4748541	4659479	4665595	4748541		Enterobacteria_phage(42.86%)	9	NA	NA
SQJ31400.1|4659479_4660610_-	UDP-4-amino-4-deoxy-L-arabinose- oxoglutarateaminotransferase UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase	NA	A0A0F7LAY0	uncultured_marine_virus	40.9	3.3e-18
SQJ31401.1|4660614_4660758_-	TDP-fucosamine acetyltransferase	NA	NA	NA	NA	NA
SQJ31403.1|4661058_4661289_-	TDP-D-fucosamine acetyltransferase	NA	NA	NA	NA	NA
SQJ31405.1|4661266_4661833_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	60.1	1.5e-59
SQJ31407.1|4661849_4662149_-	glucose-1-phosphate thymidylyltransferase	NA	A0A1D7XFC1	Escherichia_phage	81.6	9.4e-29
SQJ31408.1|4662245_4662641_-	UDP-N-acetylglucosamine epimerase	NA	I7HTA3	Enterobacteria_phage	53.8	5.9e-31
SQJ31410.1|4662684_4663251_-	UDP-N-acetylglucosamine epimerase	NA	I7HTA3	Enterobacteria_phage	46.5	6.8e-28
SQJ31412.1|4663250_4664513_-	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1H3J6	Paramecium_bursaria_Chlorella_virus	27.0	1.6e-24
SQJ31413.1|4664509_4665595_-	UDP-N-acetyl-D-glucosamine 2-epimerase	NA	A0A1V0SAG5	Catovirus	31.9	1.4e-26
