The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483491	Staphylococcus auricularis strain NCTC12101 genome assembly, chromosome: 1	2216666	458045	465282	2216666		Staphylococcus_phage(16.67%)	9	NA	NA
SQJ07229.1|458045_458885_+	aldo keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	45.2	2.5e-63
SQJ07230.1|459183_460236_+	glucosyl transferase	NA	A0A192Y8W7	Salmonella_phage	40.6	3.3e-60
SQJ07232.1|460380_460629_-	transglycosylase associated family protein	NA	NA	NA	NA	NA
SQJ07234.1|460693_461287_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ07236.1|461490_462207_-	radical activating enzyme	NA	A0A1U9WRB6	Streptococcus_virus	44.2	9.1e-54
SQJ07238.1|462199_462625_-	6-pyruvoyl tetrahydrobiopterin synthase	NA	NA	NA	NA	NA
SQJ07240.1|462626_463298_-	putative ExsB family protein	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	5.3e-64
SQJ07242.1|463550_464144_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.5	3.2e-36
SQJ07244.1|464127_465282_+	putative chorismate binding protein	NA	S4VNU7	Pandoravirus	35.4	6.2e-28
>prophage 2
LS483491	Staphylococcus auricularis strain NCTC12101 genome assembly, chromosome: 1	2216666	479270	489161	2216666		Acinetobacter_phage(33.33%)	8	NA	NA
SQJ07256.1|479270_479807_+	putative 5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.9	2.2e-28
SQJ07257.1|479885_480815_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	NA	NA	NA	NA
SQJ07258.1|480928_482431_-	putative proton-dependent oligopeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	9.1e-64
SQJ07259.1|482742_484257_-	di-tripeptide permease	NA	A0A0P0IY73	Acinetobacter_phage	35.3	5.2e-67
SQJ07260.1|484523_485024_-	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	65.6	1.6e-52
SQJ07261.1|485051_485921_-	permease	NA	NA	NA	NA	NA
SQJ07262.1|486694_487093_+	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	75.8	7.3e-53
SQJ07263.1|487055_489161_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.7	0.0e+00
>prophage 3
LS483491	Staphylococcus auricularis strain NCTC12101 genome assembly, chromosome: 1	2216666	735308	743777	2216666		Synechococcus_phage(33.33%)	9	NA	NA
SQJ09910.1|735308_735791_+	phosphoribosylcarboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	1.2e-22
SQJ09914.1|735777_736908_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
SQJ09918.1|736904_737612_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	41.2	1.4e-46
SQJ09922.1|737608_737872_+	phosphoribosylformylglycinamidine synthase PurS component	NA	NA	NA	NA	NA
SQJ09925.1|737868_738540_+	phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit	NA	NA	NA	NA	NA
SQJ09929.1|738532_740722_+	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.2	1.5e-136
SQJ09932.1|740700_742188_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.0	1.3e-46
SQJ09935.1|742180_743218_+	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.9e-68
SQJ09938.1|743210_743777_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.6	1.1e-25
>prophage 4
LS483491	Staphylococcus auricularis strain NCTC12101 genome assembly, chromosome: 1	2216666	1135557	1145405	2216666		Bacillus_phage(28.57%)	11	NA	NA
SQJ11736.1|1135557_1136943_-	ATP-dependent DNA helicase	NA	M1PGQ0	Moumouvirus	31.2	3.8e-56
SQJ11814.1|1136920_1137898_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ11816.1|1138004_1138253_+	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	50.7	1.3e-15
SQJ11818.1|1138461_1139010_-	riboflavin transporter	NA	NA	NA	NA	NA
SQJ11820.1|1139304_1141062_-	respiratory response protein SrrB	NA	A0A1V0SGX0	Hokovirus	26.6	6.8e-18
SQJ11821.1|1141054_1141768_-	respiratory response protein SrrA	NA	W8CYM9	Bacillus_phage	43.0	5.7e-48
SQJ11823.1|1141896_1142634_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
SQJ11826.1|1142626_1143178_-	putative segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	30.5	1.1e-09
SQJ11828.1|1143158_1143896_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	27.5	1.6e-05
SQJ11848.1|1143987_1144491_+	Putative cytosolic protein	NA	NA	NA	NA	NA
SQJ11850.1|1144517_1145405_-	site-specific recombinase	NA	A0A0K2CP59	Brevibacillus_phage	31.5	5.1e-38
>prophage 5
LS483491	Staphylococcus auricularis strain NCTC12101 genome assembly, chromosome: 1	2216666	1390472	1423595	2216666	tRNA	Staphylococcus_phage(92.31%)	35	NA	NA
SQJ13028.1|1390472_1391753_+	flavoprotein	NA	A0A2H4PQX1	Staphylococcus_phage	76.9	1.5e-38
SQJ13090.1|1391806_1392010_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ13091.1|1392289_1392601_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	69.9	7.7e-34
SQJ13092.1|1392620_1395035_-|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.6	0.0e+00
SQJ13093.1|1395339_1396518_-	multidrug resistance protein-like protein	NA	A0A2H4PQR6	Staphylococcus_phage	75.6	5.3e-168
SQJ13117.1|1396626_1397580_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	2.3e-68
SQJ13119.1|1397576_1398137_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	64.3	8.1e-66
SQJ13139.1|1398232_1398634_-	Repressor of toxins Rot	NA	NA	NA	NA	NA
SQJ13168.1|1398701_1399658_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
SQJ13169.1|1399958_1400786_-	lysophospholipase	NA	NA	NA	NA	NA
SQJ13170.1|1401069_1402068_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	71.4	4.1e-129
SQJ13172.1|1402160_1402628_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.0	2.0e-54
SQJ13189.1|1402640_1403852_-	riboflavin biosynthesis protein	NA	A0A2H4PQS2	Staphylococcus_phage	68.5	3.2e-160
SQJ13210.1|1403863_1404508_-	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	57.5	1.3e-62
SQJ13241.1|1404514_1405555_-	riboflavin specific deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	65.6	3.9e-130
SQJ13250.1|1406006_1407491_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	61.9	2.5e-13
SQJ13252.1|1407725_1408571_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	Q4ZE13	Staphylococcus_virus	40.6	1.4e-40
SQJ13255.1|1408835_1409060_-	putative staphylococcal protein	NA	NA	NA	NA	NA
SQJ13258.1|1409274_1409763_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	45.9	3.5e-25
SQJ13261.1|1409764_1410202_+	comK family protein	NA	NA	NA	NA	NA
SQJ13264.1|1410210_1410666_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.8	1.6e-19
SQJ13268.1|1410891_1411611_-	Transaldolase	NA	A0A0E3G6C9	Synechococcus_phage	34.0	1.8e-17
SQJ13271.1|1411875_1412181_+	membrane protein	NA	NA	NA	NA	NA
SQJ13273.1|1412269_1412638_+	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	54.2	8.8e-29
SQJ13276.1|1412630_1412984_+	CrcB-like protein	NA	NA	NA	NA	NA
SQJ13279.1|1413015_1413858_-	aldo keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	66.2	1.7e-107
SQJ13305.1|1414051_1414957_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	68.7	1.5e-93
SQJ13310.1|1415062_1416259_-	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	84.4	5.9e-191
SQJ13313.1|1416633_1418226_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	79.1	5.2e-251
SQJ13316.1|1418318_1418801_-	low G+C gram positive nudix hydrolase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	51.0	5.7e-36
SQJ13538.1|1418854_1419097_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	80.8	2.8e-31
SQJ13543.1|1419077_1420094_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	52.7	5.3e-92
SQJ13576.1|1420105_1421491_-	O-succinylbenzoic acid-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	58.2	3.8e-157
SQJ13581.1|1421746_1422319_-	cell wall surface anchor family protein	NA	NA	NA	NA	NA
SQJ13585.1|1422857_1423595_+	Uncharacterised protein	NA	Q4ZD54	Staphylococcus_phage	59.6	2.1e-21
>prophage 6
LS483491	Staphylococcus auricularis strain NCTC12101 genome assembly, chromosome: 1	2216666	1447494	1482685	2216666	tail,capsid,holin,integrase,transposase,head,protease	uncultured_Caudovirales_phage(50.0%)	38	1442078:1442093	1495490:1495505
1442078:1442093	attL	TTTAATTGTTGTGTCA	NA	NA	NA	NA
SQJ13695.1|1447494_1448073_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A248SJ97	Salicola_phage	35.1	1.4e-25
SQJ13699.1|1448151_1448451_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ13701.1|1448455_1449433_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ13704.1|1449586_1450888_-	proton glutamate symporter	NA	NA	NA	NA	NA
SQJ13707.1|1451145_1451982_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
SQJ13709.1|1452069_1453455_-	Fumarate hydratase class II	NA	NA	NA	NA	NA
SQJ13711.1|1453601_1454009_-	membrane protein	NA	NA	NA	NA	NA
SQJ13713.1|1454174_1454354_-	putative uncharcterised protein	NA	NA	NA	NA	NA
SQJ13716.1|1454379_1454979_-	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
SQJ13719.1|1455156_1455627_-	rRNA methylase	NA	NA	NA	NA	NA
SQJ13721.1|1455626_1456757_-	(Fe-S)-binding protein	NA	NA	NA	NA	NA
SQJ13723.1|1456905_1457964_-	regulatory protein	NA	NA	NA	NA	NA
SQJ13727.1|1458777_1459122_+	surface lipoprotein-related protein	NA	NA	NA	NA	NA
SQJ13729.1|1459234_1459597_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ13730.1|1459911_1460610_+	putative lipoprotein	NA	A0A2H4JAL5	uncultured_Caudovirales_phage	60.0	1.2e-18
SQJ13732.1|1463100_1463847_-	putative glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.9	2.2e-18
SQJ13735.1|1464024_1465458_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A1W6JQB6	Staphylococcus_phage	74.7	2.4e-202
SQJ13737.1|1465438_1465927_-|holin	holin, phage phi LC3 family	holin	U3PJ27	Staphylococcus_phage	51.6	2.2e-35
SQJ13739.1|1465975_1466374_-	hypothetical phage membrane protein	NA	A0A2H4JCM1	uncultured_Caudovirales_phage	59.1	5.6e-37
SQJ13741.1|1466541_1466790_-	hypothetical phage membrane protein	NA	A0A1W6JNI9	Staphylococcus_phage	46.8	3.7e-07
SQJ13742.1|1466786_1467407_-	Phage-related replication protein	NA	H9A132	Staphylococcus_phage	55.5	9.9e-57
SQJ13744.1|1467420_1468629_-	phage protein	NA	A0A2H4JC27	uncultured_Caudovirales_phage	53.8	8.0e-119
SQJ13746.1|1468640_1469381_-	hypothetical phage peptidase	NA	A0A2H4J3L1	uncultured_Caudovirales_phage	73.6	1.7e-103
SQJ13748.1|1469382_1470039_-	hypothetical phage peptidase	NA	A0A2H4J7W9	uncultured_Caudovirales_phage	76.5	3.4e-100
SQJ13750.1|1472102_1472849_-|transposase	IS1181 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.0	6.0e-24
SQJ13752.1|1473023_1474748_-	putative glycine-rich cell wall surface anchor protein	NA	NA	NA	NA	NA
SQJ13754.1|1475612_1476050_-|tail	phage tail length tape-measure protein	tail	NA	NA	NA	NA
SQJ13757.1|1476306_1476612_-	Uncharacterised protein	NA	A0A2H4JAA8	uncultured_Caudovirales_phage	58.8	1.7e-25
SQJ13759.1|1476700_1477558_-|tail	phage major tail, phi13 family protein	tail	A0A2H4J9R4	uncultured_Caudovirales_phage	65.2	4.4e-71
SQJ13761.1|1477599_1478016_-	phage protein	NA	A0A2H4J2L3	uncultured_Caudovirales_phage	48.2	7.1e-35
SQJ13763.1|1478012_1478408_-	putative phiSLT protein	NA	A0A2H4JA97	uncultured_Caudovirales_phage	50.4	1.2e-34
SQJ13765.1|1478404_1478749_-|head,tail	phage head-tail adaptor	head,tail	A0A1W6JQ73	Staphylococcus_phage	63.5	1.3e-34
SQJ13767.1|1478741_1479029_-	Bacteriophage	NA	A0A2H4J447	uncultured_Caudovirales_phage	63.7	1.1e-26
SQJ13768.1|1479028_1479211_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ13770.1|1479227_1480517_-|capsid	Phage major capsid protein	capsid	A0A1W6JQD9	Staphylococcus_phage	68.0	9.0e-153
SQJ13771.1|1480529_1481306_-|protease	phage protease	protease	A0A2H4J3J2	uncultured_Caudovirales_phage	59.3	4.1e-60
SQJ13773.1|1481637_1482108_+	DNA integration/recombination/inversion protein	NA	Q4ZD55	Staphylococcus_phage	32.0	2.6e-17
SQJ13775.1|1482295_1482685_+|integrase	integrase	integrase	Q4ZD55	Staphylococcus_phage	48.3	1.5e-23
1495490:1495505	attR	TGACACAACAATTAAA	NA	NA	NA	NA
>prophage 7
LS483491	Staphylococcus auricularis strain NCTC12101 genome assembly, chromosome: 1	2216666	2080247	2089667	2216666	integrase	Staphylococcus_phage(66.67%)	11	2077852:2077865	2086525:2086538
2077852:2077865	attL	ATAAATTCAAAAAC	NA	NA	NA	NA
SQJ16995.1|2080247_2080922_+	Transposase for insertion sequence-like element IS431mec	NA	A0A0N9RU54	Staphylococcus_phage	98.7	5.8e-127
SQJ16998.1|2080990_2081191_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ17000.1|2081386_2081986_+	recombinase/resolvase	NA	E5FFF9	Burkholderia_phage	30.8	3.1e-15
SQJ17003.1|2082046_2082364_+	arsenical resistance operon repressor	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	3.6e-39
SQJ17008.1|2082360_2083650_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	81.6	1.0e-188
SQJ17010.1|2083667_2084063_+	arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
SQJ17013.1|2084489_2084705_-	Universal stress protein family	NA	NA	NA	NA	NA
SQJ17016.1|2084837_2085512_-	Transposase for insertion sequence-like element IS431mec	NA	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
SQJ17019.1|2085763_2086471_+|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	55.3	1.0e-65
SQJ17022.1|2086636_2088178_-	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	31.6	6.8e-22
2086525:2086538	attR	ATAAATTCAAAAAC	NA	NA	NA	NA
SQJ17025.1|2088200_2089667_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	1.7e-94
