The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	4725066	1641640	1650207	4725066	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
SQJ40070.1|1641640_1642588_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	6.2e-10
SQJ40071.1|1642571_1643303_+	putative permease transmembrane component	NA	NA	NA	NA	NA
SQJ40072.1|1643283_1643391_-	membrane protein	NA	NA	NA	NA	NA
SQJ40073.1|1643450_1644182_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
SQJ40074.1|1644404_1646090_+	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	90.6	2.9e-276
SQJ40075.1|1646086_1646806_+	two-component system response regulator	NA	NA	NA	NA	NA
SQJ40076.1|1646852_1647323_+	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.4	8.0e-75
SQJ40077.1|1647474_1647933_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	74.5	8.9e-55
SQJ40078.1|1648173_1650207_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	2.8e-55
>prophage 2
LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	4725066	2395705	2410635	4725066		Escherichia_phage(66.67%)	17	NA	NA
SQJ42398.1|2395705_2396794_-	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.8	8.4e-43
SQJ42399.1|2397040_2397367_-	UPF0060 membrane protein CKO_01576	NA	A0A218MNG8	uncultured_virus	52.0	2.9e-23
SQJ42400.1|2397520_2397862_+	putative secreted protein	NA	NA	NA	NA	NA
SQJ42401.1|2397897_2398458_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
SQJ42402.1|2398497_2399244_-	Hypothetical UPF0257 lipoprotein ynfC precursor	NA	NA	NA	NA	NA
SQJ42403.1|2399315_2399621_+	outer membrane protein	NA	NA	NA	NA	NA
SQJ42404.1|2399771_2402312_+	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	48.8	4.4e-212
SQJ42405.1|2402308_2403526_+	dimethyl sulfoxide reductase subunit	NA	A0A077SK27	Escherichia_phage	47.7	9.0e-70
SQJ42406.1|2404001_2404742_+	dimethyl sulfoxide reductase subunit	NA	A0A077SK27	Escherichia_phage	47.1	6.9e-57
SQJ42407.1|2404751_2405369_+	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.1	1.6e-75
SQJ42408.1|2405370_2406228_+	dimethyl sulfoxide reductase subunit H	NA	A0A077SK59	Escherichia_phage	33.9	1.1e-21
SQJ42409.1|2406270_2406885_+	Anaerobic dimethyl sulfoxide reductasechaperone DmsD	NA	A0A077SLS7	Escherichia_phage	37.3	9.6e-28
SQJ42410.1|2407189_2407900_+	ABC transporter membrane protein	NA	NA	NA	NA	NA
SQJ42411.1|2407928_2408240_+	ABC transporter periplasmic binding protein	NA	NA	NA	NA	NA
SQJ42412.1|2408287_2408830_+	ABC transporter periplasmic binding protein	NA	NA	NA	NA	NA
SQJ42413.1|2408839_2409487_+	ABC transporter membrane protein	NA	NA	NA	NA	NA
SQJ42414.1|2409486_2410635_+	ABC transporter ATP/GTP-binding protein	NA	G9BWD6	Planktothrix_phage	33.9	2.2e-25
>prophage 3
LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	4725066	2646815	2688666	4725066	protease,integrase,tail,holin,terminase	Salmonella_phage(24.0%)	45	2656829:2656844	2672530:2672545
SQJ42850.1|2646815_2650721_-|protease	hemoglobin protease	protease	Q9LA54	Enterobacteria_phage	41.8	2.6e-288
SQJ42851.1|2651459_2651789_+	phage-like protein	NA	NA	NA	NA	NA
SQJ42852.1|2652169_2653543_+	phage-like protein	NA	NA	NA	NA	NA
SQJ42853.1|2653856_2654258_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
SQJ42854.1|2654353_2654521_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ42855.1|2654799_2655090_+	Bor protein	NA	C6ZCX3	Enterobacteria_phage	71.9	1.2e-33
SQJ42856.1|2655573_2656521_+|protease	outer membrane protease	protease	NA	NA	NA	NA
SQJ42857.1|2656769_2658473_+	phage-like protein	NA	NA	NA	NA	NA
2656829:2656844	attL	CCCCGATTTCAGCGGG	NA	NA	NA	NA
SQJ42858.1|2658420_2658702_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ42859.1|2658730_2659687_+	phage-like protein	NA	NA	NA	NA	NA
SQJ42860.1|2659650_2659914_+	phage-like protein	NA	NA	NA	NA	NA
SQJ42861.1|2660234_2662742_+	invasion plasmid antigen / internalinputative	NA	NA	NA	NA	NA
SQJ42862.1|2662820_2663033_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.5e-20
SQJ42863.1|2663285_2663957_+	Gifsy-2 prophage protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	2.4e-80
SQJ42864.1|2664098_2665217_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	95.9	8.0e-174
SQJ42865.1|2665219_2665639_-	Error-prone repair protein UmuD	NA	A0A1W6JNS2	Morganella_phage	59.1	5.0e-36
SQJ42866.1|2666589_2666973_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	46.9	2.4e-21
SQJ42867.1|2667983_2668157_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ42868.1|2669352_2669595_+	phage-like protein	NA	NA	NA	NA	NA
SQJ42869.1|2669663_2670011_-	HtrL protein	NA	NA	NA	NA	NA
SQJ42870.1|2671235_2672690_-|tail	side tail fiber protein	tail	E5G6P0	Salmonella_phage	68.8	1.8e-40
2672530:2672545	attR	CCCGCTGAAATCGGGG	NA	NA	NA	NA
SQJ42871.1|2672679_2673963_-	gp33 TerL	NA	A0A0M5M1R6	Salmonella_phage	83.8	1.2e-152
SQJ42872.1|2674020_2674650_-|terminase	putative prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	98.1	3.3e-108
SQJ42873.1|2674724_2674895_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ42874.1|2674891_2675404_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ42875.1|2675458_2675941_-	Phage outer membrane lytic protein Rz, Endopeptidase	NA	Q56118	Enterobacteria_phage	66.9	1.3e-51
SQJ42876.1|2675925_2676414_-	lysozyme	NA	M9P0E5	Enterobacteria_phage	68.1	2.1e-57
SQJ42877.1|2676391_2676700_-|holin	phage-holin analog protein	holin	NA	NA	NA	NA
SQJ42878.1|2676885_2677431_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ42879.1|2677421_2677628_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ42880.1|2678028_2678553_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ42881.1|2678813_2679182_-	phage antitermination protein Q	NA	I6PDF8	Cronobacter_phage	58.8	1.3e-32
SQJ42882.1|2679487_2679694_-	gifsy-1 prophage NinG	NA	A0A0M4RU10	Salmonella_phage	54.9	1.0e-05
SQJ42998.1|2679968_2680289_-	IrsA	NA	A0A0U2RT94	Escherichia_phage	80.4	3.5e-42
SQJ43000.1|2680352_2680658_-	putative bacteriophage cohesive ends	NA	NA	NA	NA	NA
SQJ43001.1|2681886_2682555_-	Replication protein 14	NA	A0A0U2JGJ0	Escherichia_phage	74.8	8.7e-67
SQJ43002.1|2682661_2683177_-	replication protein	NA	A0A0U2RT81	Escherichia_phage	60.9	8.5e-46
SQJ43019.1|2683127_2683343_-	replication protein	NA	A0A0U2RT81	Escherichia_phage	88.1	2.2e-24
SQJ43020.1|2683872_2684127_+	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	67.5	5.5e-22
SQJ43021.1|2684244_2684703_+	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	70.1	1.9e-52
SQJ43025.1|2684738_2685059_+	Uncharacterised protein	NA	A0A222YY67	Escherichia_phage	60.2	3.6e-34
SQJ43027.1|2685051_2685384_+	bacteriophage protein	NA	S4TNP2	Salmonella_phage	81.8	8.8e-20
SQJ43028.1|2685380_2685884_+	Eaa protein	NA	A0A075B8H2	Enterobacteria_phage	92.3	6.0e-36
SQJ43029.1|2686159_2687302_+	Integrase	NA	O21929	Phage_21	80.0	2.4e-173
SQJ43030.1|2687415_2688666_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	1.1e-19
>prophage 4
LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	4725066	2956266	3025900	4725066	integrase,tail,capsid,plate,terminase	Cronobacter_phage(59.09%)	91	2994435:2994449	3025975:3025989
SQJ43402.1|2956266_2958396_-|tail	phage tail tape measure protein, lambda family	tail	F2VWZ5	Shigella_virus	21.8	3.2e-06
SQJ43403.1|2958812_2959052_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43404.1|2959048_2959180_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43405.1|2959526_2959784_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43406.1|2959932_2960061_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43407.1|2960133_2960565_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43408.1|2960576_2960915_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43409.1|2961319_2961523_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43410.1|2961721_2961934_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43411.1|2962212_2962464_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.2	8.4e-15
SQJ43412.1|2963336_2963633_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43413.1|2963635_2964346_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43414.1|2964381_2964885_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43415.1|2964886_2965312_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43416.1|2965313_2965535_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43417.1|2965918_2966356_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43418.1|2966356_2966668_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43419.1|2967390_2967717_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43420.1|2967709_2968711_+	bacteriophage P4 DNA primase	NA	NA	NA	NA	NA
SQJ43421.1|2968667_2969171_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43422.1|2969279_2970632_-|integrase	Site-specific recombinase, phage integrase	integrase	NA	NA	NA	NA
SQJ43423.1|2970738_2971752_+	oxidoreductase	NA	NA	NA	NA	NA
SQJ43424.1|2971748_2972579_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.1	1.1e-07
SQJ43425.1|2972575_2972899_-	cytoplasmic protein	NA	NA	NA	NA	NA
SQJ43426.1|2973026_2973542_+	lipoprotein	NA	NA	NA	NA	NA
SQJ43427.1|2973452_2973626_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43428.1|2973770_2974499_+	Glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	35.8	3.9e-28
SQJ43429.1|2974516_2975248_+	arginine ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
SQJ43430.1|2975254_2975971_+	arginine transporter permease ArtQ	NA	NA	NA	NA	NA
SQJ43431.1|2975970_2976639_+	arginine transporter permease ArtM	NA	NA	NA	NA	NA
SQJ43432.1|2976875_2977607_+	arginine-binding periplasmic protein 2	NA	NA	NA	NA	NA
SQJ43433.1|2977782_2979195_+	arylsulfate sulfo transferase	NA	NA	NA	NA	NA
SQJ43434.1|2979280_2980768_-	sulfatase	NA	NA	NA	NA	NA
SQJ43435.1|2980777_2981098_-	phosphotransferase enzyme II, B component	NA	NA	NA	NA	NA
SQJ43436.1|2981129_2982473_-	PTS transport protein, component II	NA	NA	NA	NA	NA
SQJ43437.1|2982755_2983886_-	RNA methyltransferase	NA	A0A1X9I6F4	Streptococcus_phage	26.1	1.2e-23
SQJ43438.1|2983928_2984330_-	membrane protein	NA	NA	NA	NA	NA
SQJ43439.1|2984475_2985321_-	putrescine ABC transporter membrane protein	NA	NA	NA	NA	NA
SQJ43440.1|2985317_2986271_-	putrescine transporter permease PotH	NA	NA	NA	NA	NA
SQJ43441.1|2986280_2987414_-	putrescine transport ATP-binding protein PotG	NA	G3M9Y6	Bacillus_virus	34.9	1.1e-29
SQJ43442.1|2987501_2988617_-	putrescine ABC transporter periplasmic-binding protein	NA	NA	NA	NA	NA
SQJ43443.1|2988962_2989439_-	putative sensory transduction regulator	NA	NA	NA	NA	NA
SQJ43444.1|2989535_2990438_-	ribosomal protein S6 modification protein	NA	A0A1D7SR78	Cyanophage	33.6	5.9e-34
SQJ43445.1|2990495_2991218_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA	NA
SQJ43446.1|2991201_2991492_-	membrane protein	NA	NA	NA	NA	NA
SQJ43447.1|2991661_2991925_+	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	70.5	3.5e-27
SQJ43448.1|2991956_2992334_-	membrane protein	NA	NA	NA	NA	NA
SQJ43449.1|2992604_2994290_+	transporter	NA	NA	NA	NA	NA
2994435:2994449	attL	ATGGGTTTTTTGTTG	NA	NA	NA	NA
SQJ43450.1|2994606_2994732_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43451.1|2994752_2995103_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43452.1|2995621_2997325_-	phage protein	NA	F1BUJ7	Cronobacter_phage	80.9	1.2e-221
SQJ43453.1|2997374_2997869_-	phage protein	NA	F1BUJ9	Cronobacter_phage	78.7	1.0e-51
SQJ43454.1|2997840_2998566_-	phage protein	NA	F1BUK1	Cronobacter_phage	56.8	2.3e-68
SQJ43455.1|2998555_2999083_-	phage protein	NA	A0A0U2QV64	Escherichia_phage	53.1	1.1e-51
SQJ43456.1|2999100_3001128_-|tail	phage tail protein	tail	F1BUK3	Cronobacter_phage	47.7	3.1e-155
SQJ43457.1|3001137_3001725_-|tail	Bacteriophage P2-related tail formation protein	tail	F1BUK5	Cronobacter_phage	82.6	2.2e-90
SQJ43458.1|3001809_3002901_-|plate	Phage baseplate	plate	F1BUK6	Cronobacter_phage	81.1	8.4e-168
SQJ43459.1|3002897_3003227_-	phage protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
SQJ43460.1|3003223_3005194_-|tail	Phage-related tail protein	tail	F1BUK9	Cronobacter_phage	71.4	2.9e-275
SQJ43461.1|3005381_3005639_-	putative phage gene	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
SQJ43462.1|3005785_3006118_-	putative phage-related protein	NA	F1BUL2	Cronobacter_phage	70.9	6.7e-36
SQJ43463.1|3006117_3006459_-	hypothetical phage-related protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
SQJ43464.1|3006455_3006749_-	Holin	NA	C7BGD7	Burkholderia_phage	46.2	1.3e-14
SQJ43465.1|3006758_3007214_-	phage protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
SQJ43466.1|3007210_3008338_-	Topoisomerase IA	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
SQJ43467.1|3008334_3008979_-	Phage virion morphogenesis protein	NA	F1BUL6	Cronobacter_phage	76.5	3.4e-92
SQJ43468.1|3009037_3009481_-	putative phage gene	NA	F1BUL7	Cronobacter_phage	70.4	6.0e-56
SQJ43469.1|3009467_3010043_-	putative phage gene	NA	F1BUL8	Cronobacter_phage	81.2	1.3e-63
SQJ43470.1|3010088_3010283_-	Uncharacterised protein	NA	Q8W634	Enterobacteria_phage	58.6	3.3e-11
SQJ43471.1|3010286_3010991_-|terminase	phage terminase subunit	terminase	F1BUM0	Cronobacter_phage	67.4	4.7e-87
SQJ43472.1|3010994_3012017_-|capsid	Phage major capsid protein	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
SQJ43473.1|3012078_3012882_-|capsid	putative capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	56.4	7.0e-79
SQJ43474.1|3013042_3014818_+|terminase	Phage terminase ATPase subunit	terminase	F1BUM5	Cronobacter_phage	83.6	5.2e-292
SQJ43475.1|3014870_3015875_+	Membrane protein	NA	F1BUM7	Cronobacter_phage	79.6	7.0e-161
SQJ43476.1|3015925_3016195_+	zinc-finger protein	NA	F1BUM8	Cronobacter_phage	94.3	5.1e-42
SQJ43477.1|3016168_3016381_-	bacteriophage protein	NA	E5G6M0	Salmonella_phage	50.9	7.1e-07
SQJ43478.1|3016618_3018250_-	Phage replication protein	NA	F1BUM9	Cronobacter_phage	76.2	1.6e-239
SQJ43479.1|3018302_3018521_-	Phage replication protein	NA	F1BUM9	Cronobacter_phage	67.2	3.7e-19
SQJ43480.1|3018517_3019378_-	putative phage gene	NA	F1BUN1	Cronobacter_phage	82.7	7.6e-132
SQJ43481.1|3019367_3019697_-	gp91	NA	C9E2N9	Enterococcus_phage	44.2	1.7e-10
SQJ43482.1|3019693_3020134_-	Eaa protein	NA	Q5G8V2	Enterobacteria_phage	66.0	2.8e-13
SQJ43483.1|3020124_3020379_-	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA	NA
SQJ43484.1|3020446_3020848_-	Uncharacterised protein	NA	F1BUN2	Cronobacter_phage	66.9	1.9e-48
SQJ43485.1|3020847_3021042_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43486.1|3021262_3021490_-	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ43487.1|3021499_3021730_-	phage protein	NA	F1BUN6	Cronobacter_phage	84.2	1.4e-24
SQJ43488.1|3021750_3022002_-	phage protein	NA	E5G6L3	Salmonella_phage	61.8	2.3e-20
SQJ43489.1|3022594_3022951_+	repressor protein	NA	NA	NA	NA	NA
SQJ43490.1|3022962_3024744_+	Abortive phage infection protein AIPR	NA	NA	NA	NA	NA
SQJ43491.1|3024848_3025241_+|integrase	probable bacteriophage integrase	integrase	A0A1S6L016	Salmonella_phage	53.4	7.4e-34
SQJ43492.1|3025216_3025900_+|integrase	probable bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	61.8	6.4e-73
3025975:3025989	attR	ATGGGTTTTTTGTTG	NA	NA	NA	NA
>prophage 5
LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	4725066	3407701	3467180	4725066	protease,tRNA,transposase	Bacillus_phage(21.43%)	56	NA	NA
SQJ43876.1|3407701_3408619_+|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	protease	NA	NA	NA	NA
SQJ43877.1|3408615_3409026_+|protease	Putative activity regulator of membraneprotease YbbK	protease	NA	NA	NA	NA
SQJ43878.1|3409067_3409484_-	copper efflux regulator	NA	NA	NA	NA	NA
SQJ43879.1|3409592_3410201_+	Lead cadmium zinc and mercury transporting ATPase	NA	NA	NA	NA	NA
SQJ43880.1|3410197_3412093_+	Lead cadmium zinc and mercury transporting ATPase	NA	A0A218MNH6	uncultured_virus	40.5	1.8e-104
SQJ43881.1|3413226_3413706_+|tRNA	Cys-tRNA(Pro) deacylase YbaK	tRNA	NA	NA	NA	NA
SQJ43882.1|3413829_3414216_-	UDP-sugar hydrolase	NA	NA	NA	NA	NA
SQJ43883.1|3414167_3415481_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
SQJ43884.1|3415653_3416874_+	fosmidomycin resistance protein	NA	NA	NA	NA	NA
SQJ43885.1|3417088_3418765_+	transport protein	NA	NA	NA	NA	NA
SQJ43886.1|3418813_3420118_-	inosine/guanosine kinase	NA	NA	NA	NA	NA
SQJ43887.1|3420270_3421242_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.9	1.7e-15
SQJ43888.1|3421238_3422201_-	ferrochelatase	NA	NA	NA	NA	NA
SQJ43889.1|3422402_3423047_-	adenylate kinase	NA	NA	NA	NA	NA
SQJ43890.1|3423252_3424239_-	invertase	NA	NA	NA	NA	NA
SQJ43892.1|3424490_3426365_-	chaperone protein HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.1	3.4e-116
SQJ43894.1|3426475_3427081_-	recombination protein RecR	NA	NA	NA	NA	NA
SQJ43895.1|3427080_3427410_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA	NA
SQJ43897.1|3428384_3429314_-	DNA polymerase III subunits gamma and tau	NA	A0A1L2BWV7	Bacteriophage	42.0	4.1e-38
SQJ43898.1|3429495_3430047_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
SQJ43899.1|3430199_3430577_-	Inner membrane protein YbaN	NA	NA	NA	NA	NA
SQJ43900.1|3430657_3431173_+	Primosomal replication protein N prime prime	NA	NA	NA	NA	NA
SQJ43901.1|3431186_3431354_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQJ43902.1|3431423_3431879_+	Transposase_31	NA	Q2A0A7	Sodalis_phage	54.9	3.1e-39
SQJ43903.1|3431980_3432472_+|transposase	Putative transposase	transposase	Q2A0A7	Sodalis_phage	48.0	7.9e-17
SQJ43904.1|3432513_3435876_-	integral membrane protein AefA	NA	NA	NA	NA	NA
SQJ43905.1|3435994_3436648_-	potential acrAB operon repressor	NA	NA	NA	NA	NA
SQJ43906.1|3436789_3437983_+	acriflavin resistance protein A	NA	NA	NA	NA	NA
SQJ43907.1|3438005_3439979_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQJ43926.1|3439986_3441153_+	acriflavin resistance protein B	NA	NA	NA	NA	NA
SQJ43927.1|3441650_3442025_+	Hha toxicity attenuator	NA	NA	NA	NA	NA
SQJ43928.1|3442052_3442271_+	hemolysin expression modulating protein	NA	NA	NA	NA	NA
SQJ43929.1|3442449_3443001_+	maltose O-acetyltransferase	NA	NA	NA	NA	NA
SQJ43930.1|3443114_3443585_+	Putative inner membrane protein	NA	NA	NA	NA	NA
SQJ43931.1|3443785_3444046_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
SQJ43932.1|3444269_3445820_+	Uncharacterized protein ylaB	NA	NA	NA	NA	NA
SQJ43933.1|3446128_3446302_+	methylated-DNA methyltransferase	NA	NA	NA	NA	NA
SQJ43934.1|3446331_3447039_-	lipoprotein	NA	NA	NA	NA	NA
SQJ43937.1|3447253_3448114_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
SQJ43938.1|3448213_3449500_-	ammonium transporter	NA	NA	NA	NA	NA
SQJ43940.1|3449531_3449870_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
SQJ43941.1|3449976_3451863_-	Multidrug resistance-like ATP-binding protein mdlB	NA	W8CYL7	Bacillus_phage	26.7	9.8e-39
SQJ43942.1|3451855_3453628_-	ABC transporter ATP-binding membrane protein	NA	W8CYL7	Bacillus_phage	29.8	6.1e-51
SQJ43943.1|3453668_3453809_-	transcriptional regulator	NA	NA	NA	NA	NA
SQJ43944.1|3453808_3454126_-	putative transcriptional regulator	NA	NA	NA	NA	NA
SQJ43945.1|3454238_3455294_+	lyase	NA	NA	NA	NA	NA
SQJ43946.1|3455386_3456160_-	HMP-PP phosphatase	NA	NA	NA	NA	NA
SQJ43947.1|3456260_3457961_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
SQJ43948.1|3458025_3458721_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.0	2.7e-87
SQJ43956.1|3458826_3459225_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA	NA
SQJ43959.1|3459328_3459703_-	competence protein ComEA	NA	NA	NA	NA	NA
SQJ43960.1|3459852_3461724_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA	NA
SQJ43991.1|3462012_3462285_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
SQJ44010.1|3462493_3464848_-|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	52.5	7.2e-225
SQJ44011.1|3465033_3466305_-|protease	ATP-dependent clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	2.5e-131
SQJ44012.1|3466556_3467180_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 6
LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	4725066	3786841	3806542	4725066	bacteriocin,transposase	Chrysochromulina_ericina_virus(50.0%)	28	NA	NA
SQJ44857.1|3786841_3787132_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQJ44858.1|3787201_3787492_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQJ44859.1|3787561_3787852_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQJ44860.1|3787921_3788212_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQJ44861.1|3788281_3788572_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
SQJ44862.1|3788574_3788925_-	VgrG protein	NA	NA	NA	NA	NA
SQJ44863.1|3789012_3789882_-	VgrG protein	NA	NA	NA	NA	NA
SQJ44864.1|3789892_3790354_-	VgrG protein	NA	NA	NA	NA	NA
SQJ44865.1|3790758_3790938_+	aromatic amino acid transporter	NA	NA	NA	NA	NA
SQJ44866.1|3790965_3792129_+	aromatic amino acid transporter	NA	NA	NA	NA	NA
SQJ44867.1|3792292_3793699_+	symporter	NA	NA	NA	NA	NA
SQJ44868.1|3793698_3794649_+	glycosyl hydrolase	NA	NA	NA	NA	NA
SQJ44869.1|3794741_3795596_-	AmpE protein	NA	NA	NA	NA	NA
SQJ44870.1|3795592_3796156_-	anhydro-N-acetylmuramyl-tripeptide amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	30.0	2.6e-11
SQJ44871.1|3796243_3796921_+	quinolinate phosphoribosyltransferase	NA	NA	NA	NA	NA
SQJ44872.1|3796941_3797136_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
SQJ44873.1|3797357_3797795_+	prepilin peptidase dependent protein D	NA	NA	NA	NA	NA
SQJ44874.1|3797804_3798464_+	protein transport protein HofB	NA	NA	NA	NA	NA
SQJ44875.1|3798460_3799036_+	protein transport protein HofB	NA	NA	NA	NA	NA
SQJ44876.1|3799177_3800290_+	type IV pilin biogenesis protein	NA	NA	NA	NA	NA
SQJ44877.1|3800410_3800812_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	56.8	2.5e-37
SQJ44878.1|3800808_3801453_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	53.2	4.6e-49
SQJ44879.1|3801678_3802299_+	Dephospho-CoA kinase	NA	NA	NA	NA	NA
SQJ44880.1|3802298_3803042_+	Protein of uncharacterised function (DUF1342)	NA	NA	NA	NA	NA
SQJ44881.1|3803051_3803243_+	zinc-binding protein	NA	NA	NA	NA	NA
SQJ44882.1|3803239_3804163_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
SQJ44883.1|3804266_3805256_+	Aldo-keto reductase family 1 member C1 homolog 20 -alpha-hydroxysteroid dehydrogenase; 20-alpha-HSD;Dihydrodiol dehydrogenase 1; DD-1; DD1	NA	NA	NA	NA	NA
SQJ44884.1|3805336_3806542_-|transposase	transposase InsQ for insertion sequence element IS609	transposase	O80301	Enterobacteria_phage	88.3	2.1e-167
>prophage 7
LS483495	Salmonella enterica strain NCTC9948 genome assembly, chromosome: 1	4725066	4332791	4375592	4725066	plate,tail,tRNA	Burkholderia_phage(44.44%)	45	NA	NA
SQJ46026.1|4332791_4333790_-|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
SQJ46032.1|4333877_4335188_-	conjugative transfer protein	NA	NA	NA	NA	NA
SQJ46034.1|4335434_4335950_+	zinc uptake regulation protein	NA	NA	NA	NA	NA
SQJ46059.1|4336048_4336261_-	stress-response protein	NA	NA	NA	NA	NA
SQJ46060.1|4336279_4336408_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQJ46061.1|4336389_4337715_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA	NA
SQJ46062.1|4337893_4338502_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
SQJ46063.1|4338610_4338979_-	diacylglycerol kinase	NA	NA	NA	NA	NA
SQJ46064.1|4339149_4340334_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQJ46065.1|4340357_4341569_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
SQJ46066.1|4341679_4342552_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
SQJ46067.1|4342565_4343063_-	chorismate lyase	NA	NA	NA	NA	NA
SQJ46068.1|4343243_4344161_-	maltose operon periplasmic protein	NA	NA	NA	NA	NA
SQJ46069.1|4344324_4345683_-	maltoporin	NA	NA	NA	NA	NA
SQJ46070.1|4345770_4346880_-	maltose/maltodextrin transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
SQJ46071.1|4347240_4348431_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA	NA
SQJ46072.1|4348617_4350162_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQJ46073.1|4350176_4351067_+	maltose transport inner membrane protein	NA	NA	NA	NA	NA
SQJ46074.1|4351410_4352886_+	D-xylose transporter XylE	NA	NA	NA	NA	NA
SQJ46075.1|4352931_4353342_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
SQJ46076.1|4353483_4355580_-	lipoprotein	NA	NA	NA	NA	NA
SQJ46079.1|4355579_4356317_-	putative lipoprotein	NA	NA	NA	NA	NA
SQJ46081.1|4356313_4356952_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
SQJ46083.1|4357015_4357261_-	YjbE secreted protein	NA	NA	NA	NA	NA
SQJ46087.1|4357701_4359351_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
SQJ46091.1|4359739_4361089_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA	NA
SQJ46096.1|4361294_4361570_-	DNA-binding protein	NA	NA	NA	NA	NA
SQJ46098.1|4362145_4362433_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	49.1	1.8e-16
SQJ46101.1|4362468_4363041_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	57.8	9.1e-57
SQJ46104.1|4363053_4363368_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	4.9e-20
SQJ46105.1|4363527_4363983_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
SQJ46106.1|4363979_4364177_+	gp12	NA	Q6QIB1	Burkholderia_phage	52.9	5.1e-07
SQJ46110.1|4364166_4365582_+|tail	tail protein	tail	A4JWK5	Burkholderia_virus	69.3	2.4e-183
SQJ46112.1|4365581_4366106_+|tail	tail protein	tail	Q6QIA9	Burkholderia_phage	68.4	5.2e-67
SQJ46114.1|4366157_4366475_+	Uncharacterised protein	NA	NA	NA	NA	NA
SQJ46116.1|4366656_4368942_+|tail	tail protein	tail	A4JWL0	Burkholderia_virus	29.0	2.2e-69
SQJ46117.1|4368941_4369895_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	52.3	9.3e-38
SQJ46118.1|4369894_4370104_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
SQJ46123.1|4370091_4371132_+	gp21	NA	A4JWL3	Burkholderia_virus	45.6	3.9e-74
SQJ46125.1|4371141_4371864_+|plate	baseplate protein	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
SQJ46134.1|4371961_4372321_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	1.4e-34
SQJ46135.1|4372311_4373025_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	62.4	4.2e-67
SQJ46137.1|4372979_4373426_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	42.9	6.7e-23
SQJ46139.1|4373418_4374051_+|tail	tail fiber protein	tail	Q6QI98	Burkholderia_phage	54.9	2.1e-22
SQJ46164.1|4374053_4375592_+|tail	tail protein	tail	A0A0M3ULH6	Salmonella_phage	42.4	1.8e-51
