bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	96.55	29	1	0	1	29	367667	367639	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	367639-367667	TTTCGAAAAGAAATTCTACAAGCAATGCA	1
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	96.55	29	1	0	1	29	1859364	1859336	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1859336-1859364	TTTCGAAAAGAAATTCTACAGACAATGCA	1
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.10	29	2	0	1	29	287245	287217	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	287217-287245	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.10	29	2	0	1	29	812118	812090	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	812090-812118	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.10	29	2	0	1	29	916270	916298	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	916270-916298	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.10	29	2	0	1	29	985410	985438	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	985410-985438	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1187662	1187634	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1187634-1187662	TTTCAAAAAGAAATTCTACAGACAATGCA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1672007	1672035	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1672007-1672035	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.10	29	2	0	1	29	2062037	2062065	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2062037-2062065	TGCATTGTCTGTAGAATTTCCTTTCGAAA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	4.1|845007|29|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.10	29	2	0	1	29	2627381	2627353	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2627353-2627381	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	5.1|850405|30|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	96.67	30	1	0	1	30	965914	965885	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	2e-07	46.0	1.0	CTTTCCGCCAGCTTCTGTGTTGGGGCCCCG	965885-965914	CGGGGCCCCAACACAGAAGCTGGCGAAAAG	1
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	5.1|850405|30|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.33	30	2	0	1	30	812154	812125	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	2e-06	42.8	1.0	CTTTCCGCCAGCTTCTGTGTTGGGGCCCCG	812125-812154	CGGGGCCCCAACATAGAAGCAGGCGGAAAG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	5.1|850405|30|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.33	30	2	0	1	30	965800	965771	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	2e-06	42.8	1.0	CTTTCCGCCAGCTTCTGTGTTGGGGCCCCG	965771-965800	CGGGGCCCCAACACAGAGGCTGGTGGAAAG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	5.1|850405|30|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.33	30	2	0	1	30	2051309	2051338	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	2e-06	42.8	1.0	CTTTCCGCCAGCTTCTGTGTTGGGGCCCCG	2051309-2051338	CTTTTCGTCAGCTTCTGTGTTGGGGCCCCG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	6.1|916228|34|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	100.00	34	0	0	1	34	1399886	1399853	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1399853-1399886	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	6.1|916228|34|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	100.00	34	0	0	1	34	1491570	1491603	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1491570-1491603	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	8.1|1187726|26|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	96.15	26	1	0	1	26	287085	287110	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	287085-287110	CGGGCCCCCAACATAGAAGCTGGCGG	1
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	8.1|1187726|26|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	96.15	26	1	0	1	26	812125	812150	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	812125-812150	CGGGGCCCCAACATAGAAGCAGGCGG	1
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	8.1|1187726|26|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	92.31	26	2	0	1	26	812181	812206	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	812181-812206	CGGGGCCCCAACATAAAAGCAGGCGG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.1|2434447|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1187715	1187683	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1187683-1187715	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.1|2434447|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1399840	1399808	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1399808-1399840	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.1|2434447|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1491616	1491648	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1491616-1491648	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.1|2434447|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	2051293	2051325	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2051293-2051325	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.1|2434447|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	2750727	2750759	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2750727-2750759	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.2|2434503|36|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	100.00	36	0	0	1	36	1187662	1187627	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1187627-1187662	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.2|2434503|36|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	97.22	36	1	0	1	36	1859364	1859329	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1859329-1859364	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.2|2434503|36|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	94.44	36	2	0	1	36	287245	287210	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	287210-287245	TAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.2|2434503|36|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	94.44	36	2	0	1	36	1672007	1672042	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1672007-1672042	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.2|2434503|36|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	94.44	36	2	0	1	36	2062037	2062072	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2062037-2062072	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.3|2434562|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1187715	1187683	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1187683-1187715	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.3|2434562|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	1399840	1399808	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1399808-1399840	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.3|2434562|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	2051293	2051325	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2051293-2051325	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	10.3|2434562|33|LR027869|CRT	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	93.94	33	2	0	1	33	2750727	2750759	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2750727-2750759	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	11.1|2973528|32|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	96.88	32	1	0	1	32	850545	850576	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	850545-850576	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	11.1|2973528|32|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	96.88	32	1	0	1	32	1113368	1113399	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1113368-1113399	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
LR027869	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	11.1|2973528|32|LR027869|CRISPRCasFinder	LR027869.1	Staphylococcus aureus isolate BPH2869 genome assembly, chromosome: 1	96.88	32	1	0	1	32	1491660	1491691	420881-420981|686740-686832|802554-802636|844981-845061|850379-850460|916204-916285|1103408-1103495|1187696-1187781|2308931-2309081|2434424-2434617|2973502-2973585	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1491660-1491691	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
