The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	498100	561498	4556353	tRNA,protease,transposase	Streptococcus_phage(14.29%)	60	NA	NA
VDY37646.1|498100_500044_+|protease	ATP-dependent metalloprotease	protease	G8DDJ2	Micromonas_pusilla_virus	43.3	9.2e-117
VDY37648.1|500147_500417_+	dihydropteroate synthase	NA	NA	NA	NA	NA
VDY37650.1|500358_500997_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	29.3	1.1e-10
VDY37652.1|500989_502327_+	PGM/PMM family protein	NA	NA	NA	NA	NA
VDY37654.1|502549_502882_+	Protein-export membrane protein secG	NA	NA	NA	NA	NA
VDY37656.1|503183_504527_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	92.1	6.9e-63
VDY37658.1|505157_505610_+	ribosome maturation protein RimP	NA	NA	NA	NA	NA
VDY37660.1|505637_507140_+	L factor	NA	NA	NA	NA	NA
VDY37662.1|507164_509846_+	protein chain initiation factor 2	NA	E3T4N3	Cafeteria_roenbergensis_virus	26.1	7.4e-24
VDY37664.1|510002_510404_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VDY37666.1|510403_511348_+|tRNA	tRNA pseudouridine 55 synthase	tRNA	NA	NA	NA	NA
VDY37668.1|512010_514146_+	Polyribonucleotide nucleotidyl transferase	NA	NA	NA	NA	NA
VDY37670.1|514255_515140_+	Lipoprotein nlpI precursor	NA	NA	NA	NA	NA
VDY37672.1|515318_516410_+	ATP-dependent RNA helicase DeaD	NA	A0A1V0SIR5	Klosneuvirus	35.5	3.3e-55
VDY37674.1|516406_517216_+	ATP-dependent RNA helicase DeaD	NA	NA	NA	NA	NA
VDY37676.1|517369_518614_+	tryptophan permease	NA	NA	NA	NA	NA
VDY37678.1|518700_519708_-	monooxygenase	NA	NA	NA	NA	NA
VDY37680.1|519815_520694_-|protease	putative protease	protease	NA	NA	NA	NA
VDY37682.1|520702_521698_-|protease	protease	protease	NA	NA	NA	NA
VDY37684.1|521914_522439_+	Putative lipid carrier protein	NA	NA	NA	NA	NA
VDY37686.1|522432_522936_+	acetyltransferase	NA	NA	NA	NA	NA
VDY37688.1|522922_523240_-	putative endonuclease containing a URI domain protein	NA	S6DF82	Invertebrate_iridovirus	50.0	6.5e-12
VDY37690.1|523277_523721_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDY37692.1|523700_524219_-	General stress protein 18	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.6	2.6e-10
VDY37694.1|524346_524982_+	putative nucleoside-diphosphate-sugar epimerase	NA	NA	NA	NA	NA
VDY37696.1|525048_525624_-	lipoprotein	NA	NA	NA	NA	NA
VDY37698.1|525633_526224_-	DnaA initiator-associating protein DiaA	NA	A0A067XQR2	Caulobacter_phage	31.9	7.1e-12
VDY37700.1|526245_526641_-	Endonuclease	NA	NA	NA	NA	NA
VDY37702.1|526598_528650_-	LppC putative lipoprotein	NA	NA	NA	NA	NA
VDY37705.1|528712_529576_+	rRNA small subunit methyl transferase I	NA	M1PLC5	Streptococcus_phage	43.0	3.9e-51
VDY37707.1|529953_530826_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
VDY37709.1|530838_531993_-	Putative tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA	NA
VDY37711.1|532293_533427_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
VDY37713.1|533512_534808_-	D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	NA	NA	NA	NA	NA
VDY37715.1|535053_535863_+	DNA-binding transcriptional regulator AgaR	NA	NA	NA	NA	NA
VDY37717.1|535972_537544_-	D-galactarate dehydratase	NA	NA	NA	NA	NA
VDY37719.1|537817_537982_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY37721.1|538072_538843_+	5-keto-4-deoxy-D-glucarate aldolase	NA	NA	NA	NA	NA
VDY37723.1|538868_538970_+	tartronate semialdehyde reductase	NA	NA	NA	NA	NA
VDY37725.1|538956_539760_+	tartronate semialdehyde reductase	NA	NA	NA	NA	NA
VDY37727.1|539857_541003_+	Glycerate-2- kinase	NA	W6LM47	Streptococcus_phage	40.9	2.4e-48
VDY37729.1|542243_543182_+	TDC operon transcriptional activator	NA	NA	NA	NA	NA
VDY37731.1|543277_544267_+	catabolic threonine dehydratase	NA	NA	NA	NA	NA
VDY37733.1|544287_545619_+	threonine/serine transporter	NA	NA	NA	NA	NA
VDY37735.1|545685_546894_+	propionate/acetate kinase	NA	NA	NA	NA	NA
VDY37737.1|546927_549222_+	formate acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	40.7	2.4e-156
VDY37739.1|549291_550656_+	L-serine dehydratase	NA	NA	NA	NA	NA
VDY37741.1|550971_552303_+	membrane protein	NA	NA	NA	NA	NA
VDY37743.1|552328_553639_+	Inner membrane protein	NA	NA	NA	NA	NA
VDY37745.1|553713_553878_-	Uncharacterized protein YhaL	NA	NA	NA	NA	NA
VDY37747.1|553901_554603_-	Pirin-like protein YhaK	NA	NA	NA	NA	NA
VDY37749.1|554707_555604_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VDY37751.1|555642_556008_-	Inner membrane protein YhaH	NA	NA	NA	NA	NA
VDY37753.1|556192_556459_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
VDY37755.1|556494_556995_+|transposase	transposase	transposase	S5WIU1	Leptospira_phage	35.0	6.8e-16
VDY37757.1|557083_557299_+	Mobile element protein	NA	NA	NA	NA	NA
VDY37759.1|557362_557755_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY37761.1|557720_558167_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY37763.1|558153_560466_-	Phage-related lysozyme (muraminidase)	NA	A0A142IF03	Pseudomonas_phage	40.5	4.0e-26
VDY37765.1|560634_561498_-|transposase	transposase IS3	transposase	U5P429	Shigella_phage	88.9	3.7e-142
>prophage 2
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	1317600	1366658	4556353	protease,coat,portal,head,holin,capsid,tail	Salmonella_phage(49.12%)	67	NA	NA
VDY39305.1|1317600_1318539_+|protease	outer membrane protease	protease	NA	NA	NA	NA
VDY39307.1|1318712_1319456_-	bacteriophage protein	NA	NA	NA	NA	NA
VDY39309.1|1319512_1319839_-	bacteriophage protein	NA	NA	NA	NA	NA
VDY39311.1|1319937_1320156_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY39313.1|1320799_1321006_+	Uncharacterised protein	NA	Q716C2	Shigella_phage	85.1	1.1e-28
VDY39315.1|1321479_1321992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VDY39317.1|1322240_1322630_-	Sulfite exporter TauE/SafE	NA	NA	NA	NA	NA
VDY39319.1|1322902_1324081_+	Flavin-dependent monooxygenase, oxygenase subunit HsaA	NA	NA	NA	NA	NA
VDY39321.1|1325074_1325281_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY39323.1|1325460_1325661_-	Gene 18 protein	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
VDY39325.1|1325863_1326448_-	phage protein	NA	S4TSR6	Salmonella_phage	87.8	1.3e-34
VDY39327.1|1326457_1326646_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY39329.1|1326642_1327086_-	Eaa protein	NA	A0A076GCP4	Escherichia_phage	59.0	4.6e-16
VDY39331.1|1327096_1327354_-	Uncharacterised protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
VDY39333.1|1327355_1327928_-	prophage protein	NA	Q5G8U8	Enterobacteria_phage	58.2	9.2e-41
VDY39335.1|1327924_1328440_-	phage protein	NA	A0A2H4FWH2	Salmonella_phage	97.1	5.3e-96
VDY39337.1|1328436_1329318_-	Phage eae protein	NA	A0A173GC65	Salmonella_phage	41.8	1.6e-28
VDY39339.1|1329489_1329783_-	anti-RecBCD protein 2	NA	Q5G8U3	Enterobacteria_phage	85.6	7.2e-42
VDY39341.1|1329829_1330114_-	anti-RecBCD	NA	E7C9P9	Salmonella_phage	97.9	1.5e-44
VDY39347.1|1330113_1330821_-	recombinase	NA	A0A2H4FN95	Salmonella_phage	99.1	2.6e-138
VDY39349.1|1331014_1331128_-	Bacteriophage lambda Kil protein	NA	C6ZR39	Salmonella_phage	100.0	7.8e-13
VDY39351.1|1331464_1332340_-	Gp53	NA	Q5G8T6	Enterobacteria_phage	91.4	8.4e-78
VDY39353.1|1332721_1333210_-	endonuclease	NA	F8UBV0	Escherichia_phage	52.6	7.6e-36
VDY39355.1|1333548_1333908_-	Phage repressor protein C2	NA	A5VW98	Enterobacteria_phage	98.3	3.1e-63
VDY39357.1|1334280_1334466_+	regulatory protein cro (Antirepressor)	NA	Q5G8T3	Enterobacteria_phage	100.0	5.4e-27
VDY39359.1|1334575_1334857_+	regulatory protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
VDY39361.1|1334891_1335038_+	Protein of uncharacterised function (DUF2740)	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
VDY39363.1|1335030_1335864_+	replication of DNA	NA	A0A1R3Y5R9	Salmonella_virus	98.9	1.6e-150
VDY39365.1|1335860_1337237_+	DNA helicase	NA	Q76H51	Enterobacteria_phage	98.3	1.3e-250
VDY39367.1|1337233_1337512_+	gp62	NA	Q5G8S7	Enterobacteria_phage	95.4	1.1e-44
VDY39369.1|1337584_1337791_+	membrane protein	NA	A0A192Y802	Salmonella_phage	97.1	1.2e-30
VDY39370.1|1337805_1337958_+	Uncharacterised protein	NA	A0A2H4FWM4	Salmonella_phage	94.0	1.3e-18
VDY39371.1|1337969_1338245_+	Uncharacterised protein	NA	A0A220NQX3	Salmonella_phage	63.7	4.1e-23
VDY39372.1|1338248_1338455_+	Uncharacterised protein	NA	I1TEG6	Salmonella_phage	100.0	5.4e-36
VDY39374.1|1338469_1338910_+	ninB protein	NA	K7P6U0	Enterobacteria_phage	97.9	1.3e-79
VDY39376.1|1338906_1339389_+	phage N-6-adenine-methyltransferase	NA	Q9EYC2	Enterobacteria_phage	96.7	1.2e-86
VDY39378.1|1339604_1339775_+	NinF family protein	NA	I6R994	Salmonella_phage	85.2	1.3e-22
VDY39380.1|1339767_1340004_+	Uncharacterised protein	NA	C6ZR59	Salmonella_phage	87.2	9.9e-34
VDY39382.1|1339984_1340455_+	Uncharacterised protein	NA	C6ZR60	Salmonella_phage	96.2	1.3e-88
VDY39384.1|1340442_1340625_+	protein Niprotein NZ	NA	C6ZR61	Salmonella_phage	98.3	1.1e-24
VDY39386.1|1340621_1341386_+	antitermination protein	NA	Q5G8R6	Enterobacteria_phage	97.6	1.4e-140
VDY39388.1|1341828_1342152_+|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	99.1	4.2e-51
VDY39390.1|1342138_1342576_+	phage lysozyme	NA	Q5G8R3	Enterobacteria_phage	96.6	2.0e-72
VDY39392.1|1342572_1343046_+	lysozyme	NA	Q56118	Enterobacteria_phage	82.9	2.7e-62
VDY39394.1|1343264_1343954_+	gp79	NA	Q5G8R0	Enterobacteria_phage	100.0	5.0e-126
VDY39396.1|1344257_1344500_+	Uncharacterized 9.0 kDa protein in gp15-gp3 intergenic region ORF80	NA	A0A192Y6S9	Salmonella_phage	100.0	3.0e-33
VDY39398.1|1344503_1344893_+	Uncharacterised protein	NA	Q76H27	Enterobacteria_phage	96.1	2.3e-72
VDY39400.1|1344892_1345297_+	Uncharacterised protein	NA	C6ZR73	Salmonella_phage	97.0	3.8e-65
VDY39402.1|1345309_1345768_+	Uncharacterised protein	NA	A0A2P1MXF5	Escherichia_phage	66.2	3.3e-49
VDY39404.1|1345767_1347228_+	Uncharacterised protein	NA	W6MW26	Pseudomonas_phage	76.7	2.0e-220
VDY39406.1|1347227_1349405_+|portal	portal protein	portal	A0A2H4FNE2	Salmonella_phage	99.3	0.0e+00
VDY39408.1|1349418_1350330_+	scaffolding protein	NA	A0A192Y6T4	Salmonella_phage	99.7	3.1e-160
VDY39410.1|1350329_1351622_+|coat	coat protein	coat	A0A192Y6V4	Salmonella_phage	99.3	1.8e-241
VDY39412.1|1351666_1351876_+	Phage protein	NA	A0A192Y697	Salmonella_phage	98.6	1.7e-32
VDY39416.1|1351859_1352360_+	Gp4	NA	I1TEJ0	Salmonella_phage	99.4	5.5e-90
VDY39418.1|1352319_1353738_+	DNA stabilization protein	NA	I1TEJ1	Salmonella_phage	97.5	9.0e-271
VDY39420.1|1353741_1354443_+|head	head completion protein	head	A0A192Y6T9	Salmonella_phage	96.6	2.9e-73
VDY39422.1|1354442_1354898_+|capsid	Phage capsid and scaffold protein	capsid	I6R0L6	Salmonella_phage	98.0	3.3e-86
VDY39424.1|1354900_1355593_+	putative DNA transfer protein	NA	G5DA80	Enterobacteria_phage	100.0	9.2e-112
VDY39426.1|1355602_1357009_+	DNA transfer protein	NA	I1TEJ5	Salmonella_phage	76.1	4.2e-172
VDY39428.1|1357008_1358940_+	DNA tranfer protein	NA	I1TEJ6	Salmonella_phage	97.0	0.0e+00
VDY39430.1|1359096_1360869_+|tail	Bifunctional tail protein	tail	A0A2H5BPB7	Salmonella_phage	48.2	1.4e-87
VDY39432.1|1360972_1362802_-	transferase	NA	A0A1R3Y5Q6	Salmonella_virus	32.7	1.8e-50
VDY39434.1|1363009_1363708_-	Uncharacterised protein	NA	Q716G0	Shigella_phage	28.7	9.0e-06
VDY39436.1|1363818_1364265_-	Acyltransferase family	NA	NA	NA	NA	NA
VDY39438.1|1364248_1365406_-	Tyrosine recombinase xerD	NA	Q716F9	Shigella_phage	78.9	1.0e-176
VDY39440.1|1365716_1366658_-	putative transport	NA	E7DYY8	Enterobacteria_phage	87.0	7.8e-146
>prophage 3
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	1682113	1690353	4556353		Enterobacteria_phage(28.57%)	8	NA	NA
VDY40041.1|1682113_1683517_+	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	31.9	8.9e-21
VDY40042.1|1683693_1684587_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
VDY40043.1|1684963_1686049_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	1.4e-101
VDY40044.1|1686048_1686948_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
VDY40046.1|1687059_1687866_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	61.9	1.1e-95
VDY40047.1|1688012_1688675_+	Putative O-antigen transporter	NA	NA	NA	NA	NA
VDY40048.1|1689251_1689488_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	59.7	5.1e-22
VDY40050.1|1689537_1690353_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	59.6	1.2e-91
>prophage 4
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	1767873	1805042	4556353	integrase,tail,transposase	Stenotrophomonas_phage(23.08%)	40	1791707:1791722	1807365:1807380
VDY40243.1|1767873_1768212_-|transposase	transposase IS1113	transposase	NA	NA	NA	NA
VDY40245.1|1768174_1768945_-|integrase	CP4-like integrase	integrase	B7SYF8	Stenotrophomonas_phage	40.8	1.1e-33
VDY40247.1|1769392_1770841_+	putative inner membrane protein	NA	NA	NA	NA	NA
VDY40249.1|1771697_1773152_-	AMP nucleosidase	NA	NA	NA	NA	NA
VDY40251.1|1773330_1773627_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40253.1|1773742_1774525_-|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	40.9	7.7e-22
VDY40255.1|1775588_1777085_-	dipeptidase	NA	NA	NA	NA	NA
VDY40257.1|1778994_1779117_-|transposase	transposase subfamily protein	transposase	NA	NA	NA	NA
VDY40259.1|1779533_1780511_+	spermidine/putrescine-binding periplasmic protein	NA	NA	NA	NA	NA
VDY40261.1|1780524_1782231_+	phosphonate ABC transporter permease	NA	NA	NA	NA	NA
VDY40263.1|1782218_1783244_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-27
VDY40265.1|1783596_1785954_-	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	86.7	6.0e-70
VDY40267.1|1786135_1786411_-|transposase	transposase	transposase	NA	NA	NA	NA
VDY40269.1|1786790_1788257_+	Protein lap4 Protein scribble; Protein smell-impaired	NA	Q9MBM1	Phage_Gifsy-1	90.1	5.1e-237
VDY40271.1|1789387_1790158_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A076YN96	Rhizobium_phage	27.2	6.6e-10
VDY40273.1|1790537_1790777_-|tail	phage tail fiber	tail	A0A0M4RTP2	Salmonella_phage	83.5	5.9e-34
VDY40275.1|1791260_1791383_+	hypothetical bacteriophage protein	NA	A0A220NQU1	Salmonella_phage	81.5	5.9e-06
VDY40277.1|1791492_1791741_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	71.9	3.3e-19
1791707:1791722	attL	CAGAAGATGATGATGG	NA	NA	NA	NA
VDY40279.1|1791985_1792741_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VDY40282.1|1793213_1793606_+|integrase	CP4-like integrase	integrase	B7SYF8	Stenotrophomonas_phage	39.2	2.0e-18
VDY40284.1|1793650_1793926_+|integrase	CP4-like integrase	integrase	NA	NA	NA	NA
VDY40286.1|1793960_1795532_-|transposase	transposase IS66	transposase	A0A218MNE7	uncultured_virus	37.2	8.6e-81
VDY40288.1|1795559_1795895_-|transposase	putative transposase subunit	transposase	NA	NA	NA	NA
VDY40293.1|1795881_1796196_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40297.1|1796619_1797108_+	Major exported protein Secreted protein hcp	NA	NA	NA	NA	NA
VDY40302.1|1797107_1797470_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40305.1|1797466_1798045_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40310.1|1798099_1798369_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40312.1|1798558_1798903_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40314.1|1799195_1799897_+	DNA-binding protein	NA	NA	NA	NA	NA
VDY40316.1|1799998_1800466_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40318.1|1800522_1800759_-	global DNA-binding transcriptional dual regulator H-NS	NA	NA	NA	NA	NA
VDY40320.1|1800899_1801196_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40322.1|1801325_1801616_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40324.1|1801688_1801925_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40326.1|1801990_1802317_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40328.1|1802337_1802556_-	DNA binding protein	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	48.0	1.2e-06
VDY40330.1|1802731_1803592_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40332.1|1804060_1804249_+|integrase	integrase	integrase	A7X7X0	Dichelobacter_phage	40.8	2.0e-05
VDY40334.1|1804742_1805042_+|transposase	IS3 transposase	transposase	NA	NA	NA	NA
1807365:1807380	attR	CCATCATCATCTTCTG	NA	NA	NA	NA
>prophage 5
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	2072551	2107171	4556353	tRNA,protease,transposase	Shigella_phage(44.44%)	40	NA	NA
VDY40934.1|2072551_2073421_+|tRNA	S-adenosylmethionine tRNA ribosyltransferase	tRNA	NA	NA	NA	NA
VDY40936.1|2073428_2074049_+	YciO family	NA	NA	NA	NA	NA
VDY40938.1|2074107_2074281_-|transposase	transposase	transposase	Q716C2	Shigella_phage	87.7	4.0e-24
VDY40940.1|2074399_2075335_-	Transposase IS116/IS110/IS902 family	NA	NA	NA	NA	NA
VDY40942.1|2075285_2075477_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40944.1|2075695_2076103_-|transposase	transposase InsF for insertion sequence IS3A/B/C/D/E/fA	transposase	Q716C2	Shigella_phage	89.0	1.7e-57
VDY40946.1|2076365_2076617_-|transposase	transposase insN	transposase	Q716C1	Shigella_phage	93.2	9.3e-30
VDY40948.1|2077026_2077248_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40950.1|2077393_2077690_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40952.1|2077896_2078772_+	pseudouridine synthase	NA	NA	NA	NA	NA
VDY40954.1|2078866_2079457_-	COB(I) alamin adenosyltransferase	NA	NA	NA	NA	NA
VDY40956.1|2079453_2080215_-	oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	22.2	2.0e-06
VDY40958.1|2080458_2081082_+|protease	putative protease sohB	protease	NA	NA	NA	NA
VDY40960.1|2081041_2081500_+|protease	putative protease sohB	protease	NA	NA	NA	NA
VDY40962.1|2081663_2081915_-	Protein yciN	NA	NA	NA	NA	NA
VDY40964.1|2082317_2084915_+	DNA topoisomerase 1	NA	A0A2K9L5F8	Tupanvirus	35.0	5.0e-86
VDY40966.1|2085125_2085254_+	CysB family transcriptional regulator	NA	NA	NA	NA	NA
VDY40968.1|2085240_2086101_+	CysB family transcriptional regulator	NA	NA	NA	NA	NA
VDY40970.1|2086395_2086524_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40972.1|2087076_2089752_+	aconitate hydratase 1	NA	NA	NA	NA	NA
VDY40974.1|2089808_2090342_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	48.6	1.0e-38
VDY40976.1|2090593_2091358_+	phosphatidylglycerophosphatase B	NA	NA	NA	NA	NA
VDY40978.1|2091507_2091816_+	Inner membrane protein yciS	NA	NA	NA	NA	NA
VDY40980.1|2091822_2091963_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
VDY40982.1|2091935_2092097_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY40984.1|2092128_2092992_+	Heat shock (predicted periplasmic) proteinYciM precursor	NA	NA	NA	NA	NA
VDY40986.1|2093183_2093921_+	Orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA	NA
VDY40988.1|2093920_2094247_+	translation initiation factor Sui1	NA	NA	NA	NA	NA
VDY40990.1|2094364_2094583_-	osmotically inducible lipoprotein B	NA	NA	NA	NA	NA
VDY40992.1|2094841_2095594_-	regulatory protein	NA	NA	NA	NA	NA
VDY40994.1|2095681_2095861_-	conserved domain protein	NA	NA	NA	NA	NA
VDY40996.1|2096271_2096754_-	RNase II stability modulator	NA	NA	NA	NA	NA
VDY40998.1|2097011_2098946_-	exoribonuclease II	NA	A0A2H4UVB7	Bodo_saltans_virus	23.8	2.3e-06
VDY41000.1|2099386_2100175_-	enoyl-(acyl carrier protein) reductase	NA	NA	NA	NA	NA
VDY41002.1|2101103_2102222_+	putative inner membrane protein	NA	NA	NA	NA	NA
VDY41004.1|2102686_2103394_+	Cyclic di-GMP regulator CdgR	NA	NA	NA	NA	NA
VDY41006.1|2103409_2104216_-	peptide transport system ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	28.2	3.6e-14
VDY41008.1|2104217_2105210_-	Peptide transport system ATP-binding protein sapD	NA	NA	NA	NA	NA
VDY41010.1|2105209_2106100_-	peptide transporter permease SapC	NA	NA	NA	NA	NA
VDY41012.1|2106514_2107171_-|transposase	transposase IS3	transposase	Q716C2	Shigella_phage	89.8	7.1e-114
>prophage 6
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	2159324	2167151	4556353	tRNA	Stx2-converting_phage(57.14%)	10	NA	NA
VDY41265.1|2159324_2160698_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.0	4.7e-51
VDY41267.1|2160741_2161677_-|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	tRNA	A0A0U2S5Z2	Escherichia_phage	95.7	2.3e-142
VDY41269.1|2161688_2161898_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY41271.1|2162408_2162870_+	T3SS secreted effector EspN-like protein	NA	NA	NA	NA	NA
VDY41273.1|2162823_2163414_+	T3SS secreted effector EspN-like protein	NA	A0A0N7KZG3	Stx2-converting_phage	31.2	1.2e-16
VDY41275.1|2163503_2164157_+	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	35.8	3.1e-32
VDY41277.1|2164221_2164539_+	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	58.0	1.3e-20
VDY41279.1|2164493_2165513_+	secretion protein EspN	NA	A0A0N7KZG3	Stx2-converting_phage	71.9	1.9e-134
VDY41281.1|2166325_2166664_+	multidrug transporter	NA	NA	NA	NA	NA
VDY41283.1|2166716_2167151_-	Universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
>prophage 7
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	2301115	2316046	4556353		Escherichia_phage(72.73%)	19	NA	NA
VDY41555.1|2301115_2302330_-	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.2	1.4e-46
VDY41557.1|2302422_2302788_-	UPF0060 membrane protein CKO_01576	NA	A0A218MNG8	uncultured_virus	52.4	2.5e-23
VDY41559.1|2302931_2303051_+	putative secreted protein	NA	NA	NA	NA	NA
VDY41561.1|2303076_2303274_+	putative secreted protein	NA	NA	NA	NA	NA
VDY41563.1|2303309_2303870_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VDY41565.1|2303910_2304657_-	Hypothetical UPF0257 lipoprotein ynfC precursor	NA	NA	NA	NA	NA
VDY41567.1|2304728_2304830_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY41569.1|2305191_2305914_+	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	47.2	3.7e-39
VDY41570.1|2305910_2306294_+	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	57.3	8.1e-25
VDY41571.1|2306232_2307627_+	dimethyl sulfoxide reductase, subunit A1	NA	A0A077SK27	Escherichia_phage	48.9	2.3e-117
VDY41572.1|2307752_2310161_+	dimethyl sulfoxide reductase subunit	NA	A0A077SK27	Escherichia_phage	48.2	1.1e-204
VDY41574.1|2310171_2310453_+	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.9	3.5e-25
VDY41576.1|2310419_2310788_+	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.3	3.2e-39
VDY41578.1|2310789_2311620_+	dimethyl sulfoxide reductase subunit H	NA	A0A077SK59	Escherichia_phage	32.3	1.2e-20
VDY41580.1|2311679_2312294_+	Anaerobic dimethyl sulfoxide reductasechaperone DmsD	NA	A0A077SLS7	Escherichia_phage	37.3	1.2e-27
VDY41581.1|2312599_2313310_+	ABC transporter membrane protein	NA	NA	NA	NA	NA
VDY41583.1|2313338_2314241_+	ABC transporter periplasmic binding protein	NA	NA	NA	NA	NA
VDY41585.1|2314250_2314898_+	ABC transporter membrane protein	NA	NA	NA	NA	NA
VDY41587.1|2314897_2316046_+	ABC transporter ATP/GTP-binding protein	NA	G9BWD6	Planktothrix_phage	33.9	1.1e-24
>prophage 8
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	2451639	2459016	4556353	tRNA,integrase	Escherichia_phage(42.86%)	12	2442810:2442821	2459753:2459764
2442810:2442821	attL	GCTGAACGAGTC	NA	NA	NA	NA
VDY41882.1|2451639_2452074_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	6.1e-13
VDY41884.1|2452185_2453745_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	40.3	5.1e-110
VDY41886.1|2453777_2454113_-|tRNA	threonyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VDY41887.1|2454496_2455747_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	86.0	2.4e-211
VDY41888.1|2455749_2456169_-	Error-prone repair protein UmuD	NA	A0A1W6JNS2	Morganella_phage	58.1	7.2e-35
VDY41890.1|2456394_2456550_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY41892.1|2456587_2456857_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY41894.1|2456929_2457319_+	lipopolysaccharide 1,2-N-acetylglucosaminetransferase	NA	NA	NA	NA	NA
VDY41896.1|2457305_2458073_+	lipopolysaccharide 1,2-N-acetylglucosaminetransferase	NA	NA	NA	NA	NA
VDY41898.1|2458269_2458446_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	81.0	1.4e-19
VDY41900.1|2458484_2458640_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	81.2	2.3e-15
VDY41902.1|2458590_2459016_-|integrase	integrase	integrase	A0A077SLK2	Escherichia_phage	75.2	4.1e-46
2459753:2459764	attR	GCTGAACGAGTC	NA	NA	NA	NA
>prophage 9
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	2796122	2804513	4556353	tRNA	Escherichia_phage(50.0%)	11	NA	NA
VDY42622.1|2796122_2796713_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	62.2	1.4e-36
VDY42624.1|2796696_2796963_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	NA	NA	NA	NA
VDY42626.1|2796973_2797408_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	56.6	7.2e-38
VDY42628.1|2797466_2797991_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	42.0	3.9e-30
VDY42630.1|2798062_2799421_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.9	2.5e-113
VDY42632.1|2799656_2800949_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.6	4.3e-94
VDY42634.1|2801200_2802544_-	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	42.2	2.1e-80
VDY42636.1|2802553_2803165_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VDY42638.1|2803237_2803462_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY42640.1|2803467_2803878_-	DNA translocase ftsK	NA	G1FGP1	Mycobacterium_phage	59.8	9.2e-27
VDY42642.1|2803874_2804513_-	DNA translocase ftsK	NA	S5VNE3	Mycobacterium_phage	47.6	7.8e-41
>prophage 10
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	3304374	3314293	4556353		Bacillus_phage(66.67%)	8	NA	NA
VDY43687.1|3304374_3305670_-	phosphate regulon sensor protein PhoR	NA	W8CYF6	Bacillus_phage	31.1	2.0e-27
VDY43689.1|3305739_3305991_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	36.4	1.7e-07
VDY43691.1|3306010_3306430_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	43.7	2.7e-21
VDY43693.1|3306603_3307845_+	Nuclease sbcCD subunit D	NA	R4JGS2	Bacillus_phage	37.5	1.0e-07
VDY43695.1|3307841_3310982_+	exonuclease subunit SbcC	NA	G3MAB6	Bacillus_virus	23.8	7.9e-09
VDY43697.1|3311154_3312288_+	MFS transport protein AraJ	NA	NA	NA	NA	NA
VDY43699.1|3312347_3313256_-	fructokinase	NA	NA	NA	NA	NA
VDY43701.1|3313381_3314293_+	recombination associated protein	NA	S4TWL4	Salmonella_phage	63.6	4.2e-104
>prophage 11
LR133910	Salmonella enterica subsp. arizonae strain NCTC7300 genome assembly, chromosome: 1	4556353	3827747	3844303	4556353	integrase,transposase	Shigella_phage(33.33%)	21	3821260:3821273	3833904:3833917
3821260:3821273	attL	GCTTCAGGCCGCGC	NA	NA	NA	NA
VDY44691.1|3827747_3828269_-|transposase	transposase IS3	transposase	U5P429	Shigella_phage	91.5	1.6e-63
VDY44693.1|3828369_3828885_-|transposase	transposase IS3	transposase	U5P429	Shigella_phage	79.5	4.3e-29
VDY44695.1|3829254_3829659_-	Uncharacterised protein	NA	Q9JMN8	Wolbachia_phage	47.5	3.0e-14
VDY44697.1|3829716_3830127_-	Transposase	NA	Q9JMN8	Wolbachia_phage	55.1	5.6e-40
VDY44699.1|3830288_3830612_-|transposase	transposase insN	transposase	Q716C1	Shigella_phage	92.9	1.6e-34
VDY44701.1|3830921_3831635_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY44703.1|3831978_3833247_-|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	40.7	3.7e-82
VDY44705.1|3833583_3834453_+	Chromosome partitioning protein	NA	NA	NA	NA	NA
3833904:3833917	attR	GCTTCAGGCCGCGC	NA	NA	NA	NA
VDY44707.1|3834465_3834840_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY44709.1|3834832_3835573_+	replicative DNA helicase	NA	O80281	Escherichia_phage	46.4	6.7e-52
VDY44711.1|3835684_3836188_+	DNA helicase	NA	O80281	Escherichia_phage	60.9	7.1e-45
VDY44713.1|3836184_3836367_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY44715.1|3836347_3837670_+	Protein with ParB-like nuclease domain inPFGI-1-like cluster	NA	NA	NA	NA	NA
VDY44717.1|3837653_3838193_+	Protein of uncharacterised function (DUF2857)	NA	NA	NA	NA	NA
VDY44719.1|3838211_3839345_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY44721.1|3839812_3840496_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY44723.1|3840506_3841622_-	putative transmembrane protein	NA	NA	NA	NA	NA
VDY44725.1|3842066_3842381_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY44727.1|3842367_3842703_+|transposase	putative transposase subunit	transposase	NA	NA	NA	NA
VDY44729.1|3842730_3843516_+	issfl4 orf3	NA	NA	NA	NA	NA
VDY44731.1|3843454_3844303_+|transposase	transposase IS66	transposase	A0A218MNE7	uncultured_virus	42.4	9.7e-55
