assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	1	959338-959610	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA|47aa|up_1|LR134075.1_958047_958188_-,NA	NA|434aa|up_9|LR134075.1_948744_950046_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|LR134075.1_950093_952328_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|LR134075.1_952405_952654_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|LR134075.1_952653_952989_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|LR134075.1_953059_953851_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|LR134075.1_954078_955716_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|LR134075.1_955803_957102_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|LR134075.1_957161_958034_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|LR134075.1_958047_958188_-	NA	NA|224aa|up_0|LR134075.1_958326_958998_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134075.1_960247_961726_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|LR134075.1_961752_963030_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|LR134075.1_963348_964134_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|LR134075.1_964203_965658_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|LR134075.1_965679_967089_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|LR134075.1_967066_967846_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|LR134075.1_967842_968703_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|LR134075.1_968850_969426_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|LR134075.1_969442_969703_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|LR134075.1_969693_970965_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	2	985581-986889	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,21	21	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA,NA	NA|245aa|up_9|LR134075.1_975308_976043_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|425aa|up_8|LR134075.1_976489_977764_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|845aa|up_7|LR134075.1_978002_980537_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|257aa|up_6|LR134075.1_980514_981285_+	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|179aa|up_5|LR134075.1_981281_981818_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|LR134075.1_981829_982885_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134075.1_982895_983642_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134075.1_983623_984274_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134075.1_984270_985194_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134075.1_985190_985484_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134075.1_986971_988009_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134075.1_988260_989169_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134075.1_989170_990598_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134075.1_990597_991203_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134075.1_991252_991576_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134075.1_991769_992081_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134075.1_992099_992810_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134075.1_992809_993289_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134075.1_993285_994335_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134075.1_994315_995077_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	3	1495580-1495697	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA,NA	NA|300aa|up_9|LR134075.1_1485062_1485962_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|LR134075.1_1486154_1487345_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|LR134075.1_1487341_1488601_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|530aa|up_6|LR134075.1_1488590_1490180_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|LR134075.1_1490492_1491851_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|LR134075.1_1491855_1492932_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|LR134075.1_1492973_1493180_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|LR134075.1_1493394_1494045_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134075.1_1494098_1494353_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134075.1_1494352_1495483_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134075.1_1495716_1498002_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1235aa|down_1|LR134075.1_1498745_1502450_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|LR134075.1_1502577_1503300_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|LR134075.1_1503446_1506074_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|LR134075.1_1506222_1507911_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|LR134075.1_1507907_1508531_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|LR134075.1_1508674_1513069_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|LR134075.1_1513069_1514719_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|LR134075.1_1514723_1515500_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|LR134075.1_1515573_1516758_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	4	1728560-1728694	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	CGTCGCATCAGGCGCTGTTTGTCGGATGCGGCGTGAACGCCTTATCC	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA,NA	NA|163aa|up_9|LR134075.1_1719085_1719574_+	PRK10191, PRK10191, putative acyl transferase; Provisional	NA|406aa|up_8|LR134075.1_1719570_1720788_+	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC	NA|406aa|up_7|LR134075.1_1720762_1721980_+	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|249aa|up_6|LR134075.1_1721990_1722737_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_5|LR134075.1_1722752_1723301_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_4|LR134075.1_1723327_1724449_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_3|LR134075.1_1724451_1725417_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|161aa|up_2|LR134075.1_1725416_1725899_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_1|LR134075.1_1725895_1727119_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_0|LR134075.1_1727121_1728558_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|down_0|LR134075.1_1728838_1730209_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|down_1|LR134075.1_1730263_1731658_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|down_2|LR134075.1_1731659_1733138_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_3|LR134075.1_1733412_1734693_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_4|LR134075.1_1734689_1735910_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_5|LR134075.1_1735920_1737315_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|298aa|down_6|LR134075.1_1737490_1738384_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|down_7|LR134075.1_1738795_1740190_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|204aa|down_8|LR134075.1_1740189_1740801_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|307aa|down_9|LR134075.1_1740802_1741723_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	5	1733220-1733353	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA,NA	NA|249aa|up_9|LR134075.1_1721990_1722737_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_8|LR134075.1_1722752_1723301_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_7|LR134075.1_1723327_1724449_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_6|LR134075.1_1724451_1725417_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|161aa|up_5|LR134075.1_1725416_1725899_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_4|LR134075.1_1725895_1727119_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_3|LR134075.1_1727121_1728558_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|up_2|LR134075.1_1728838_1730209_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|up_1|LR134075.1_1730263_1731658_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|up_0|LR134075.1_1731659_1733138_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_0|LR134075.1_1733412_1734693_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_1|LR134075.1_1734689_1735910_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_2|LR134075.1_1735920_1737315_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|298aa|down_3|LR134075.1_1737490_1738384_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|down_4|LR134075.1_1738795_1740190_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|204aa|down_5|LR134075.1_1740189_1740801_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|307aa|down_6|LR134075.1_1740802_1741723_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|380aa|down_7|LR134075.1_1741716_1742856_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|384aa|down_8|LR134075.1_1742857_1744009_+	pfam14897, EpsG, EpsG family	NA|374aa|down_9|LR134075.1_1744010_1745132_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	6	2124902-2125025	6	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA,NA	NA|82aa|up_9|LR134075.1_2115209_2115455_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|96aa|up_8|LR134075.1_2115480_2115768_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|65aa|up_7|LR134075.1_2116324_2116519_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134075.1_2116989_2117616_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134075.1_2117636_2119739_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134075.1_2119751_2120390_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134075.1_2120453_2121122_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134075.1_2121118_2121904_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134075.1_2121955_2122720_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134075.1_2122731_2124336_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134075.1_2125339_2126596_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134075.1_2126636_2128010_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134075.1_2128224_2128866_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134075.1_2128905_2130054_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|172aa|down_4|LR134075.1_2130344_2130860_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|231aa|down_5|LR134075.1_2130864_2131557_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_6|LR134075.1_2131669_2132602_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_7|LR134075.1_2132598_2133624_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_8|LR134075.1_2134177_2135347_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|LR134075.1_2135581_2136163_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	8	3050833-3050977	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA|64aa|up_9|LR134075.1_3044377_3044569_+,NA|205aa|up_5|LR134075.1_3046089_3046704_+,NA|40aa|up_4|LR134075.1_3046997_3047117_+,NA|56aa|up_2|LR134075.1_3047875_3048043_+,NA	NA|64aa|up_9|LR134075.1_3044377_3044569_+	NA	NA|140aa|up_8|LR134075.1_3044755_3045175_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|74aa|up_7|LR134075.1_3045321_3045543_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|84aa|up_6|LR134075.1_3045539_3045791_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|205aa|up_5|LR134075.1_3046089_3046704_+	NA	NA|40aa|up_4|LR134075.1_3046997_3047117_+	NA	NA|143aa|up_3|LR134075.1_3047364_3047793_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_2|LR134075.1_3047875_3048043_+	NA	NA|357aa|up_1|LR134075.1_3048278_3049349_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|LR134075.1_3049483_3050767_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134075.1_3051000_3053262_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134075.1_3053444_3054878_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134075.1_3054953_3056006_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134075.1_3056189_3057143_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134075.1_3057183_3058179_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134075.1_3058333_3059152_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134075.1_3059152_3060211_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134075.1_3060213_3060903_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134075.1_3060902_3061676_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134075.1_3061842_3061992_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	9	3282939-3283035	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|LR134075.1_3274725_3275418_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134075.1_3275637_3276180_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|321aa|up_7|LR134075.1_3276563_3277526_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134075.1_3277527_3277740_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134075.1_3277847_3278369_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134075.1_3278404_3279790_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134075.1_3279963_3280458_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134075.1_3280460_3281183_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134075.1_3281300_3281810_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134075.1_3281806_3282874_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134075.1_3283068_3283962_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134075.1_3283958_3284774_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134075.1_3284784_3286044_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134075.1_3286053_3287721_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134075.1_3288037_3289087_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134075.1_3289108_3290344_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134075.1_3290354_3291140_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|LR134075.1_3291367_3292513_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|LR134075.1_3292534_3293836_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|LR134075.1_3293892_3295254_-	PRK08044, PRK08044, allantoinase AllB
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	10	3573333-3573588	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	CATCAGGCACCGTGCACCGGACGCCGGATGCGGCGTAAACGCCTTATCCGGCCT	54	1	1	3573504-3573567	LR134075.1_3573589-3573652	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA|326aa|up_2|LR134075.1_3569940_3570918_-,NA	NA|156aa|up_9|LR134075.1_3563768_3564236_-	pfam03748, FliL, Flagellar basal body-associated protein FliL	NA|354aa|up_8|LR134075.1_3564243_3565305_-	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|104aa|up_7|LR134075.1_3565301_3565613_-	PRK06064, PRK06064, thiolase domain-containing protein	NA|131aa|up_6|LR134075.1_3565617_3566010_-	pfam02561, FliS, Flagellar protein FliS	NA|439aa|up_5|LR134075.1_3566032_3567349_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|305aa|up_4|LR134075.1_3567639_3568554_-	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|281aa|up_3|LR134075.1_3569039_3569882_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|326aa|up_2|LR134075.1_3569940_3570918_-	NA	NA|310aa|up_1|LR134075.1_3570934_3571864_-	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|459aa|up_0|LR134075.1_3571878_3573255_-	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|100aa|down_0|LR134075.1_3573676_3573976_-	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|222aa|down_1|LR134075.1_3575090_3575756_-	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|262aa|down_2|LR134075.1_3575959_3576745_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|down_3|LR134075.1_3576823_3577561_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|down_4|LR134075.1_3577560_3578763_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|down_5|LR134075.1_3578906_3579620_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|down_6|LR134075.1_3579619_3580051_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|down_7|LR134075.1_3580053_3580389_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|down_8|LR134075.1_3580470_3581208_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|93aa|down_9|LR134075.1_3581288_3581567_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	11	3820063-3820204	10	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA,NA	NA|429aa|up_9|LR134075.1_3809339_3810626_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_8|LR134075.1_3810676_3811618_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_7|LR134075.1_3811632_3812403_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_6|LR134075.1_3812875_3814390_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_5|LR134075.1_3814420_3815563_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_4|LR134075.1_3815691_3816909_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_3|LR134075.1_3816982_3818536_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|87aa|up_2|LR134075.1_3818644_3818905_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|162aa|up_1|LR134075.1_3818943_3819429_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|LR134075.1_3819434_3820025_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|LR134075.1_3820233_3820629_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|LR134075.1_3820890_3824112_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|LR134075.1_3824129_3825278_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|LR134075.1_3825733_3826555_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|LR134075.1_3826721_3827636_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|LR134075.1_3827701_3828652_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|LR134075.1_3828653_3829103_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|LR134075.1_3829227_3829722_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|LR134075.1_3829721_3832538_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|LR134075.1_3832580_3833522_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCA_900635175.1_38936_C01	LR134075	Escherichia coli strain NCTC9084 genome assembly, chromosome: 1	12	3995511-3995660	11	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,cas14i,DinG,c2c9_V-U4,RT	NA,NA|551aa|down_6|LR134075.1_4002774_4004427_-	NA|340aa|up_9|LR134075.1_3983701_3984721_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|LR134075.1_3984724_3985288_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|LR134075.1_3985504_3986536_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|LR134075.1_3986559_3987324_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|LR134075.1_3987388_3988708_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|LR134075.1_3988774_3989773_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|LR134075.1_3989850_3991353_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|LR134075.1_3991513_3992596_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|LR134075.1_3992595_3993696_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|LR134075.1_3993962_3995474_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|LR134075.1_3995827_3996271_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|LR134075.1_3996270_3999126_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|LR134075.1_3999181_4000378_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|LR134075.1_4000570_4001074_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|LR134075.1_4001119_4001536_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|LR134075.1_4001697_4002702_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|551aa|down_6|LR134075.1_4002774_4004427_-	NA	NA|151aa|down_7|LR134075.1_4004549_4005002_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|LR134075.1_4005146_4005740_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|LR134075.1_4005810_4006524_+	PRK12742, PRK12742, SDR family oxidoreductase
