assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635205.1_39081_F01	LR134080	Escherichia coli strain NCTC9082 genome assembly, chromosome: 1	1	621967-622084	1	CRISPRCasFinder	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|180aa|up_9|LR134080.1_608894_609434_-,NA|55aa|down_0|LR134080.1_622157_622322_-	NA|180aa|up_9|LR134080.1_608894_609434_-	NA	NA|313aa|up_8|LR134080.1_610222_611161_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|LR134080.1_611259_612249_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|LR134080.1_612270_613602_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|LR134080.1_613627_614836_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|LR134080.1_614869_617164_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|LR134080.1_617177_617567_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|LR134080.1_617638_619003_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|404aa|up_1|LR134080.1_619277_620489_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|LR134080.1_620635_621946_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|LR134080.1_622157_622322_-	NA	NA|234aa|down_1|LR134080.1_622344_623046_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|LR134080.1_623150_624047_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|LR134080.1_624097_624454_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|LR134080.1_624695_625061_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|LR134080.1_625353_626340_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|LR134080.1_626409_626892_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|LR134080.1_626987_627287_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|LR134080.1_627276_627681_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|LR134080.1_627683_627989_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_900635205.1_39081_F01	LR134080	Escherichia coli strain NCTC9082 genome assembly, chromosome: 1	2	1122627-1123509	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,14,14	14	TypeI-E	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|121aa|up_3|LR134080.1_1119523_1119886_-,NA	NA|745aa|up_9|LR134080.1_1112459_1114694_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|LR134080.1_1114771_1115020_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|LR134080.1_1115019_1115355_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|LR134080.1_1115425_1116217_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|LR134080.1_1116444_1118082_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|LR134080.1_1118169_1119468_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|LR134080.1_1119523_1119886_-	NA	NA|302aa|up_2|LR134080.1_1119921_1120827_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|LR134080.1_1120840_1121443_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|LR134080.1_1121615_1122287_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|174aa|down_0|LR134080.1_1124147_1124669_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|122aa|down_1|LR134080.1_1124741_1125107_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LR134080.1_1125422_1127222_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LR134080.1_1127221_1128934_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LR134080.1_1129007_1129742_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|down_5|LR134080.1_1130352_1133052_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_6|LR134080.1_1133149_1134712_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|down_7|LR134080.1_1134708_1135248_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_8|LR134080.1_1135259_1136315_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|LR134080.1_1136325_1137072_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCA_900635205.1_39081_F01	LR134080	Escherichia coli strain NCTC9082 genome assembly, chromosome: 1	3	1139011-1140381	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,22,22	22	TypeI-E	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|571aa|up_9|LR134080.1_1127221_1128934_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134080.1_1129007_1129742_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|up_7|LR134080.1_1130352_1133052_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|LR134080.1_1133149_1134712_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|LR134080.1_1134708_1135248_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|LR134080.1_1135259_1136315_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134080.1_1136325_1137072_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134080.1_1137053_1137704_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|LR134080.1_1137700_1138621_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134080.1_1138620_1138914_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134080.1_1140462_1141500_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134080.1_1141751_1142660_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134080.1_1142661_1144089_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134080.1_1144088_1144694_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134080.1_1144743_1145067_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134080.1_1145260_1145572_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|156aa|down_6|LR134080.1_1145590_1146058_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|95aa|down_7|LR134080.1_1146017_1146302_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_8|LR134080.1_1146301_1146781_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_9|LR134080.1_1146777_1147827_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed
GCA_900635205.1_39081_F01	LR134080	Escherichia coli strain NCTC9082 genome assembly, chromosome: 1	4	2244226-2244349	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|471aa|up_9|LR134080.1_2233680_2235093_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|LR134080.1_2235649_2235859_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|LR134080.1_2236314_2236941_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|LR134080.1_2236961_2239064_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|LR134080.1_2239076_2239715_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|LR134080.1_2239778_2240447_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|LR134080.1_2240443_2241229_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_2|LR134080.1_2241280_2242045_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|328aa|up_1|LR134080.1_2242056_2243040_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|201aa|up_0|LR134080.1_2243057_2243660_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|155aa|down_0|LR134080.1_2244663_2245128_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|275aa|down_1|LR134080.1_2245094_2245919_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_2|LR134080.1_2245959_2247333_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_3|LR134080.1_2247547_2248189_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_4|LR134080.1_2248228_2249377_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_5|LR134080.1_2249667_2250879_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_6|LR134080.1_2250991_2251924_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_7|LR134080.1_2251920_2252946_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_8|LR134080.1_2253499_2254669_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|LR134080.1_2254814_2255396_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCA_900635205.1_39081_F01	LR134080	Escherichia coli strain NCTC9082 genome assembly, chromosome: 1	6	3358278-3358422	6	CRISPRCasFinder	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|171aa|up_9|LR134080.1_3345642_3346155_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|303aa|up_8|LR134080.1_3347562_3348471_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|LR134080.1_3348662_3350684_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|LR134080.1_3351262_3351940_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|LR134080.1_3351932_3352688_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|LR134080.1_3352674_3353829_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|LR134080.1_3353825_3354866_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|LR134080.1_3354952_3356242_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|LR134080.1_3356300_3356777_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|LR134080.1_3356928_3358212_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134080.1_3358445_3360707_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134080.1_3360889_3362323_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134080.1_3362398_3363451_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134080.1_3363634_3364588_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134080.1_3364628_3365624_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134080.1_3365778_3366597_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134080.1_3366597_3367656_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134080.1_3367658_3368348_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134080.1_3368347_3369121_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134080.1_3369287_3369437_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900635205.1_39081_F01	LR134080	Escherichia coli strain NCTC9082 genome assembly, chromosome: 1	7	4121128-4121260	3	PILER-CR	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|156aa|up_8|LR134080.1_4112368_4112836_+,NA	NA|200aa|up_9|LR134080.1_4111733_4112333_+	pfam14124, DUF4291, Domain of unknown function (DUF4291)	NA|156aa|up_8|LR134080.1_4112368_4112836_+	NA	NA|197aa|up_7|LR134080.1_4113135_4113726_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|LR134080.1_4113806_4115669_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|LR134080.1_4115661_4116192_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|LR134080.1_4116299_4117631_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|LR134080.1_4117689_4117977_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|LR134080.1_4117973_4119260_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|LR134080.1_4119310_4120252_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|LR134080.1_4120266_4121037_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|LR134080.1_4121510_4123025_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|LR134080.1_4123055_4124198_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|LR134080.1_4124326_4125544_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|LR134080.1_4125617_4127171_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|LR134080.1_4127279_4128065_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|LR134080.1_4128070_4128661_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|LR134080.1_4128779_4129175_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|LR134080.1_4129434_4132656_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|LR134080.1_4132673_4133822_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|LR134080.1_4134277_4135099_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
