The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	741902	784547	4682556	protease,integrase,transposase	Shigella_phage(50.0%)	39	739471:739486	792478:792493
739471:739486	attL	TGCTCCGGCACTGTTT	NA	NA	NA	NA
VDY97375.1|741902_742397_+|protease	hydrogenase 2 maturation protease	protease	NA	NA	NA	NA
VDY97377.1|742389_742878_+	hydrogenase-2 component protein	NA	NA	NA	NA	NA
VDY97379.1|742870_743212_+	hydrogenase nickel incorporation protein HybF	NA	NA	NA	NA	NA
VDY97381.1|743224_743473_+	hydrogenase-2 component protein	NA	NA	NA	NA	NA
VDY97386.1|743595_744462_-	glutathione S-transferase	NA	NA	NA	NA	NA
VDY97390.1|744666_746526_+	bifunctional glutathionylspermidine synthetase/amidase [includes glutathionylspermidine synthase;glutathionylspermidine amidase]	NA	NA	NA	NA	NA
VDY97393.1|746817_748317_+	low-affinity inorganic phosphate transporter 2	NA	NA	NA	NA	NA
VDY97395.1|748365_749058_-	ATP-binding protein YghT	NA	NA	NA	NA	NA
VDY97396.1|749246_749945_+	nucleoside triphosphate hydrolase domain	NA	NA	NA	NA	NA
VDY97398.1|749976_750735_+	ATP-binding protein yghR	NA	NA	NA	NA	NA
VDY97400.1|750780_752130_+	membrane protein, conserved protein	NA	NA	NA	NA	NA
VDY97402.1|752129_752954_+	ybl138	NA	NA	NA	NA	NA
VDY97404.1|752965_753526_+	transcriptional regulator	NA	NA	NA	NA	NA
VDY97406.1|753556_754627_+	putative permease	NA	NA	NA	NA	NA
VDY97408.1|754623_755703_+	putative permease	NA	NA	NA	NA	NA
VDY97410.1|755737_756910_-	putative aminotransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	30.7	5.5e-40
VDY97412.1|756909_757158_-	putative acyl carrier protein	NA	NA	NA	NA	NA
VDY97414.1|757189_758104_-	putative epimerase	NA	NA	NA	NA	NA
VDY97417.1|758100_759789_-	AMP-binding protein	NA	NA	NA	NA	NA
VDY97418.1|760200_761343_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VDY97420.1|761349_762114_-	DNA-binding transcriptional regulator GlcC	NA	NA	NA	NA	NA
VDY97422.1|762364_763864_+	glycolate oxidase subunit	NA	NA	NA	NA	NA
VDY97424.1|763863_764916_+	glycolate oxidase subunit	NA	NA	NA	NA	NA
VDY97426.1|764926_766150_+	glycolate oxidase iron-sulfur subunit	NA	NA	NA	NA	NA
VDY97428.1|766154_766559_+	protein GlcG	NA	NA	NA	NA	NA
VDY97430.1|766580_768752_+	malate synthase G	NA	NA	NA	NA	NA
VDY97432.1|769106_770789_+	glycolate permease	NA	NA	NA	NA	NA
VDY97434.1|771404_775835_+	inner membrane lipoprotein	NA	NA	NA	NA	NA
VDY97436.1|776032_776842_+	prepilin peptidase A	NA	NA	NA	NA	NA
VDY97438.1|776907_777318_+	type II secretion system lipoprotein	NA	NA	NA	NA	NA
VDY97440.1|777476_778448_+	type II secretion protein GspC	NA	NA	NA	NA	NA
VDY97442.1|778416_778851_+	ybl85	NA	NA	NA	NA	NA
VDY97444.1|778850_778982_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY97446.1|779375_779726_+|transposase	transposase ORF A, IS3 family	transposase	Q716C1	Shigella_phage	97.7	5.2e-39
VDY97448.1|779645_780797_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
VDY97450.1|781114_781522_+|integrase	putative integrase	integrase	Q716C2	Shigella_phage	94.9	5.5e-64
VDY97452.1|781740_782817_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VDY97454.1|783136_784048_+	KAP family protein	NA	NA	NA	NA	NA
VDY97456.1|784187_784547_-|transposase	transposase InsG for insertion sequence element IS4	transposase	NA	NA	NA	NA
792478:792493	attR	TGCTCCGGCACTGTTT	NA	NA	NA	NA
>prophage 2
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	1025706	1038889	4682556	tRNA	Escherichia_phage(50.0%)	12	NA	NA
VDY97919.1|1025706_1026468_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
VDY97921.1|1026461_1027088_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
VDY97923.1|1027227_1028367_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
VDY97925.1|1028429_1029422_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
VDY97927.1|1029515_1030880_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
VDY97929.1|1030968_1031745_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
VDY97931.1|1031749_1032388_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
VDY97932.1|1032384_1033647_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
VDY97934.1|1033643_1034552_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.2	1.1e-117
VDY97936.1|1034747_1035515_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	1.5e-70
VDY97938.1|1035565_1036222_-	serine/threonine-specific protein phosphatase 2	NA	A0A222YWF0	Escherichia_phage	46.3	6.2e-49
VDY97940.1|1036327_1038889_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 3
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	1118451	1187047	4682556	terminase,integrase,tail,lysis,plate,portal,tRNA,capsid,transposase	Salmonella_phage(70.0%)	77	1103628:1103642	1138715:1138729
1103628:1103642	attL	GTTCGTGCGCTTTAC	NA	NA	NA	NA
VDY98103.1|1118451_1118754_+|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
VDY98105.1|1118966_1119599_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.2	2.0e-121
VDY98107.1|1119595_1120342_-|integrase	phage integrase	integrase	A0A1B5FPC6	Escherichia_phage	87.4	4.9e-119
VDY98109.1|1120748_1122482_+	CMP/dCMP deaminase zinc-binding protein	NA	NA	NA	NA	NA
VDY98111.1|1122862_1123879_-	Fels-2 prophage protein	NA	E5G6L0	Salmonella_phage	93.2	6.1e-189
VDY98113.1|1123880_1124513_-	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	90.0	2.0e-105
VDY98115.1|1124632_1124875_+	putative phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	97.5	6.8e-38
VDY98117.1|1124907_1125417_+	phage regulatory protein CII	NA	E5G6L3	Salmonella_phage	94.1	1.5e-82
VDY98119.1|1125424_1125625_+	Protein of uncharacterised function (DUF2724)	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
VDY98121.1|1125588_1125930_+	Uncharacterised protein	NA	E5G6L5	Salmonella_phage	99.1	4.6e-56
VDY98123.1|1125997_1126231_+	Protein of uncharacterised function (DUF2732)	NA	E5G6L6	Salmonella_phage	96.1	7.0e-32
VDY98125.1|1126230_1126458_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
VDY98127.1|1126454_1127312_+	site-specific DNA-methyltransferase	NA	E5G6L8	Salmonella_phage	97.9	2.1e-161
VDY98129.1|1127308_1129723_+	putative replication protein for prophage	NA	E5G6L9	Salmonella_phage	98.1	0.0e+00
VDY98131.1|1129875_1130064_+	Uncharacterised protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
VDY98133.1|1130074_1130308_+	Prophage protein	NA	A0A0M4S6H1	Salmonella_phage	92.2	3.7e-33
VDY98135.1|1130381_1130642_+	Uncharacterised protein	NA	J9Q7T5	Salmonella_phage	62.2	5.8e-19
VDY98137.1|1130690_1131302_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY98139.1|1131590_1132289_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDY98141.1|1132297_1133332_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.2	2.8e-173
VDY98144.1|1133331_1135098_-	Terminase, ATPase subunit	NA	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
VDY98146.1|1135240_1136074_+|capsid	capsid scaffolding	capsid	A0A1S6KZW9	Salmonella_phage	88.8	7.9e-118
VDY98148.1|1136090_1137149_+|capsid	P2 family phage major capsid protein	capsid	E5G6M6	Salmonella_phage	93.4	2.9e-181
VDY98150.1|1137152_1137365_+|terminase	small terminase subunit	terminase	E5G6M7	Salmonella_phage	94.3	5.6e-28
VDY98152.1|1137361_1137685_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	87.3	6.3e-47
VDY98154.1|1137684_1137888_+|tail	tail X family protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
VDY98156.1|1137891_1138107_+	putative secretory protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
VDY98158.1|1138087_1138603_+	glycoside hydrolase family protein	NA	E5G6N1	Salmonella_phage	92.4	2.1e-89
VDY98160.1|1138599_1139028_+|lysis	lysis-like protein	lysis	E5G6N2	Salmonella_phage	89.4	1.8e-57
1138715:1138729	attR	GTAAAGCGCACGAAC	NA	NA	NA	NA
VDY98162.1|1139123_1139750_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.7	1.2e-49
VDY98164.1|1139736_1140435_+|plate	Baseplate assembly protein GpJ	plate	A0A1S6KZY6	Salmonella_phage	89.6	8.4e-105
VDY98166.1|1140428_1140623_+|tail	TP901 family phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	65.1	1.0e-12
VDY98168.1|1140619_1141105_+|tail	bacteriophage tail protein GpU	tail	E5G6Q2	Salmonella_phage	80.6	4.8e-67
VDY98170.1|1141101_1142202_+	Late control protein D protein	NA	A0A1S6KZZ5	Salmonella_phage	88.5	7.6e-177
VDY98172.1|1142045_1142477_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDY98174.1|1142515_1142998_-	BRCT domain type II	NA	Q19UP0	Mannheimia_phage	34.3	4.6e-17
VDY98176.1|1143698_1144181_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
VDY98178.1|1144312_1144789_+	putative oligoketide cyclase/lipid transport protein	NA	NA	NA	NA	NA
VDY98180.1|1144778_1145069_+	RnfH family protein	NA	NA	NA	NA	NA
VDY98182.1|1145130_1145472_-	putative outer membrane assembly lipoprotein	NA	NA	NA	NA	NA
VDY98184.1|1145620_1147282_-	DNA repair protein	NA	NA	NA	NA	NA
VDY98186.1|1147367_1148246_-	inorganic polyphosphate/ATP-NAD kinase	NA	NA	NA	NA	NA
VDY98188.1|1148368_1148962_+	heat shock protein	NA	NA	NA	NA	NA
VDY98190.1|1149016_1150258_-	inner membrane protein, UPF0053 family	NA	NA	NA	NA	NA
VDY98192.1|1150323_1151190_-	putative magnesium transport protein	NA	NA	NA	NA	NA
VDY98194.1|1151281_1152643_+	signal recognition particle protein	NA	NA	NA	NA	NA
VDY98196.1|1152891_1153140_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
VDY98198.1|1153158_1153707_+	16S rRNA-processing protein RimM	NA	NA	NA	NA	NA
VDY98200.1|1153737_1154061_+|tRNA	tRNA (guanine-1-)-methyltransferase	tRNA	NA	NA	NA	NA
VDY98202.1|1154057_1154504_+|tRNA	tRNA (guanine-1-)-methyltransferase	tRNA	NA	NA	NA	NA
VDY98205.1|1154545_1154893_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
VDY98207.1|1154968_1155451_-	outer membrane lipoprotein	NA	NA	NA	NA	NA
VDY98209.1|1155466_1156693_-	diguanylate cyclase	NA	NA	NA	NA	NA
VDY98211.1|1156682_1157201_-	156G surface protein	NA	NA	NA	NA	NA
VDY98213.1|1157350_1157713_-	putative lipoprotein	NA	NA	NA	NA	NA
VDY98215.1|1157925_1158996_+	phospho-2-dehydro-3-deoxyheptonate aldolase	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	4.0e-90
VDY98217.1|1159006_1160128_+	bifunctional chorismate mutase T and prephenate dehydrogenase	NA	NA	NA	NA	NA
VDY98219.1|1160170_1161229_-	P-protein [includes: chorismate mutase; prephenate dehydratase]	NA	NA	NA	NA	NA
VDY98221.1|1161579_1161921_-	translation inhibitor protein RaiA	NA	NA	NA	NA	NA
VDY98223.1|1162191_1162929_-	outer membrane protein assembly complex subunit YfiO	NA	NA	NA	NA	NA
VDY98225.1|1163063_1164044_+	23S rRNA pseudouridine synthase	NA	NA	NA	NA	NA
VDY98227.1|1164040_1164565_+	putative inner membrane protein	NA	NA	NA	NA	NA
VDY98229.1|1164555_1164771_+	putative inner membrane protein	NA	NA	NA	NA	NA
VDY98231.1|1164900_1167474_+	protein disaggregation chaperone	NA	H6X3M6	Enterobacteria_phage	35.3	2.6e-127
VDY98233.1|1173327_1174626_+	alpha-ketoglutarate transporter	NA	Q6JIH2	Burkholderia_virus	32.2	1.3e-45
VDY98235.1|1174622_1174895_-	lipoprotein	NA	NA	NA	NA	NA
VDY98237.1|1174991_1176347_-	phosphatidylserine synthase	NA	NA	NA	NA	NA
VDY98239.1|1176460_1179121_-	putative acyl-CoA synthetase	NA	NA	NA	NA	NA
VDY98241.1|1179152_1179851_-	DTW domain-containing protein	NA	NA	NA	NA	NA
VDY98243.1|1179919_1180339_-	thioredoxin 2	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
VDY98245.1|1180545_1181583_+	methyltransferase	NA	NA	NA	NA	NA
VDY98247.1|1181630_1182320_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	48.8	7.1e-56
VDY98249.1|1182624_1183008_+	autonomous glycyl radical cofactor	NA	Q7Y524	Enterobacteria_phage	72.0	1.4e-32
VDY98251.1|1183063_1183651_-	putative transporter	NA	NA	NA	NA	NA
VDY98253.1|1183753_1184635_+	transcriptional regulator YfiE	NA	NA	NA	NA	NA
VDY98255.1|1184843_1186178_-	ATP-dependent RNA helicase	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.8	2.9e-45
VDY98257.1|1186309_1187047_+|tRNA	tRNA (adenine-N(6)-)-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 4
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	1664635	1674080	4682556		Enterobacteria_phage(85.71%)	10	NA	NA
VDY99117.1|1664635_1665562_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
VDY99119.1|1665566_1666298_+	ABC transporter permease	NA	NA	NA	NA	NA
VDY99121.1|1666278_1666386_-	putative inner membrane protein	NA	NA	NA	NA	NA
VDY99123.1|1666445_1667177_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	98.5	8.2e-111
VDY99125.1|1667398_1669084_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VDY99127.1|1669080_1669800_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VDY99129.1|1669846_1670317_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
VDY99131.1|1670357_1670819_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
VDY99133.1|1670943_1672947_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	97.2	0.0e+00
VDY99135.1|1672943_1674080_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.7	8.5e-163
>prophage 5
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	1793515	1806528	4682556	transposase	Shigella_phage(44.44%)	13	NA	NA
VDY99345.1|1793515_1794148_-|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.2	2.0e-121
VDY99347.1|1794409_1795561_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
VDY99349.1|1795517_1795886_-	CP4-6 prophage; partial regulator of insertion element IS911A	NA	Q716C1	Shigella_phage	97.7	7.2e-39
VDY99351.1|1796530_1797628_-	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	33.6	3.9e-48
VDY99353.1|1797763_1798150_+	DNA repair protein	NA	O64339	Escherichia_phage	83.5	1.8e-56
VDY99355.1|1798493_1799660_+	penicillin-binding protein 6B	NA	B6DZZ7	Stx2-converting_phage	99.0	8.5e-227
VDY99357.1|1799778_1800252_+	DNA gyrase inhibitory protein	NA	NA	NA	NA	NA
VDY99359.1|1800448_1801507_+	inner membrane protein	NA	NA	NA	NA	NA
VDY99361.1|1801678_1802008_+	putative alpha helix protein	NA	NA	NA	NA	NA
VDY99363.1|1803032_1804184_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
VDY99365.1|1804407_1804908_+|transposase	IS911 transposase orfB	transposase	Q716C2	Shigella_phage	55.1	1.5e-42
VDY99367.1|1805126_1806203_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VDY99369.1|1806321_1806528_+|transposase	IS911 transposase orfB	transposase	Q716C2	Shigella_phage	59.1	8.1e-16
>prophage 6
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	2206391	2260061	4682556	integrase,transposase,tail,protease,lysis	Escherichia_phage(29.03%)	58	2225341:2225356	2244499:2244514
VDZ00145.1|2206391_2207213_-|protease	putative protease	protease	NA	NA	NA	NA
VDZ00147.1|2207488_2207797_-	acid shock protein	NA	NA	NA	NA	NA
VDZ00149.1|2208220_2209474_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VDZ00151.1|2209580_2210474_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VDZ00153.1|2210608_2211625_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
VDZ00155.1|2211952_2212648_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
VDZ00157.1|2212600_2213857_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
VDZ00159.1|2214051_2214666_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
VDZ00161.1|2214708_2215563_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA	NA
VDZ00163.1|2215564_2216182_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
VDZ00165.1|2216192_2218589_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.6	4.8e-208
VDZ00167.1|2218676_2219786_-	putative dimethyl sulfoxide reductase YnfE	NA	A0A077SK27	Escherichia_phage	47.1	2.4e-85
VDZ00169.1|2221417_2222683_+|integrase	integrase	integrase	NA	NA	NA	NA
VDZ00171.1|2223700_2224090_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00173.1|2224091_2224832_+	putative host killing protein	NA	M4R311	Vibrio_phage	29.9	2.3e-12
VDZ00175.1|2224834_2225008_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00177.1|2225104_2225617_+	Uncharacterised protein	NA	NA	NA	NA	NA
2225341:2225356	attL	CCAACGCCGCCAGCAG	NA	NA	NA	NA
VDZ00179.1|2225613_2226246_-|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.2	2.0e-121
VDZ00181.1|2226458_2226761_-|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
VDZ00183.1|2226987_2227143_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00185.1|2227372_2228851_-	dimethyl sulfoxide reductase chain YnfE	NA	A0A077SK27	Escherichia_phage	49.9	6.8e-120
VDZ00187.1|2229049_2229355_-	protein	NA	NA	NA	NA	NA
VDZ00189.1|2229426_2230173_+	lipoprotein	NA	NA	NA	NA	NA
VDZ00191.1|2230175_2230736_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VDZ00193.1|2230770_2231112_-	protein	NA	NA	NA	NA	NA
VDZ00195.1|2231246_2231573_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
VDZ00197.1|2231778_2232999_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	28.3	4.8e-31
VDZ00199.1|2233003_2234023_+	dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
VDZ00201.1|2234210_2235491_-|integrase	defective integrase; Qin prophage	integrase	B6DZ48	Enterobacteria_phage	62.1	3.3e-155
VDZ00203.1|2235525_2235762_-	putative excisionase	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
VDZ00205.1|2235849_2237748_-	Exonuclease RNase T and DNA polymerase III	NA	A0A192Y6E0	Salmonella_phage	56.7	6.5e-59
VDZ00207.1|2238069_2238426_+	putative methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
VDZ00209.1|2239195_2239324_+	putative prophage protein	NA	A0A076GCN9	Escherichia_phage	70.3	2.1e-06
VDZ00211.1|2239578_2239758_+	membrane protein	NA	NA	NA	NA	NA
VDZ00213.1|2240092_2241406_+|integrase,transposase	putative integrase/transposase	integrase,transposase	NA	NA	NA	NA
VDZ00215.1|2241842_2242175_-	Qin prophage protein	NA	NA	NA	NA	NA
VDZ00217.1|2242707_2242947_+	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
VDZ00219.1|2242946_2243234_+	toxin of the RelE-RelB toxin-antitoxin system	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
VDZ00221.1|2243305_2243461_+	putative host cell-killing modulation protein	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
VDZ00223.1|2243677_2243929_+	putative prophage protein	NA	NA	NA	NA	NA
VDZ00225.1|2244275_2245325_+	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
2244499:2244514	attR	CTGCTGGCGGCGTTGG	NA	NA	NA	NA
VDZ00227.1|2245338_2246091_+	lambdoid prophage Qin antitermination protein Q-like protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
VDZ00229.1|2246512_2246725_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
VDZ00230.1|2247842_2247962_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00232.1|2248003_2248210_+|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.1	4.5e-30
VDZ00234.1|2248214_2248307_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00236.1|2249649_2249838_+	Qin prophage protein	NA	K7PGU6	Enterobacteria_phage	53.4	1.6e-05
VDZ00238.1|2249834_2250368_+	prophage lysozyme (endolysin)	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
VDZ00240.1|2250364_2250862_+	Qin prophage protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
VDZ00242.1|2252110_2252284_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
VDZ00244.1|2252435_2252846_-	Qin prophage	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
VDZ00246.1|2253525_2254071_+	DNA packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.2	9.5e-88
VDZ00248.1|2254067_2254355_+|tail	Putative tail component of prophage	tail	A0A291AWT4	Escherichia_phage	98.9	1.4e-42
VDZ00250.1|2254351_2254630_+|tail	Prophage tail fiber domain protein	tail	NA	NA	NA	NA
VDZ00252.1|2255302_2255893_-	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	39.3	1.5e-25
VDZ00254.1|2256209_2256443_-	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
VDZ00256.1|2257228_2258512_+	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
VDZ00258.1|2258600_2260061_+	putative sugar dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	1.5e-42
>prophage 7
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	2298850	2318997	4682556	integrase,transposase	Shigella_phage(66.67%)	21	2314930:2314989	2327013:2328323
VDZ00332.1|2298850_2300305_+|integrase	Phage integrase	integrase	NA	NA	NA	NA
VDZ00334.1|2300288_2301839_+	Integrase	NA	NA	NA	NA	NA
VDZ00336.1|2301835_2304202_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ00338.1|2304201_2304636_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00340.1|2304838_2305054_-	transcriptional regulator	NA	NA	NA	NA	NA
VDZ00342.1|2305268_2305829_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00344.1|2306233_2306431_+	putative transcriptional regulator	NA	NA	NA	NA	NA
VDZ00346.1|2306719_2307262_+	ribonuclease T	NA	NA	NA	NA	NA
VDZ00348.1|2307275_2307773_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00350.1|2307769_2308750_-	ThiF family protein	NA	NA	NA	NA	NA
VDZ00352.1|2309034_2309520_-	ThiF family protein	NA	NA	NA	NA	NA
VDZ00354.1|2309533_2310781_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00356.1|2310777_2311485_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00358.1|2311466_2311952_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00360.1|2312172_2313039_-	Protein of uncharacterised function (DUF3644)	NA	NA	NA	NA	NA
VDZ00362.1|2313453_2314185_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
VDZ00364.1|2314244_2314595_+|transposase	transposase ORF A, IS3 family	transposase	Q716C1	Shigella_phage	90.9	4.9e-37
VDZ00366.1|2314514_2314781_-|transposase	transposase, IS30	transposase	Q9MBM9	Staphylococcus_prophage	54.5	3.1e-15
2314930:2314989	attL	TGAACCGCCCCGGAAATCCTGGAGACTAAACTCCCTGAGAAAGAGGTAAACAGGATGACT	NA	NA	NA	NA
VDZ00368.1|2316199_2316979_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	NA	NA	NA	NA
VDZ00370.1|2317321_2317702_+|integrase	putative integrase	integrase	Q716C2	Shigella_phage	91.7	1.3e-56
VDZ00372.1|2317920_2318997_+|transposase	putative transposase	transposase	NA	NA	NA	NA
2327013:2328323	attR	AGTCATCCTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAGTTCCGGTATCCGGATGGCACGCTTTTCAATACCTTCTATCGCAGTAGCGCCGATCCGCTTGAGGGGGAGCTTAGAACGGTGTGGGAATTTGACATGCAGGTAAAAGGCCCCTTGGCCGGCCGGTTCGACCACCTTTGATTTCATCCTTCCGGCGACGCAGACAAGGCGTCGCCTTTTTATGCTTATATGCTAATAATGAAAGTATTTACTTTAAATATTTGCAATAATCTCTTATTCACAATAGTTTTGATTCATTAGTGCTTTATCTGTACTAACTTTCTCTCCTCCTCCGCTAAGATCCGAAAAATGCCAGATCCAGAAGTGAAGTAACGCAGCGACTGAAAATAAAATAGAGAGAGTTTTCAATCCGCATGACTTTAAAAAAGACAATTTTTAGAAATAAGCCGGATAAAAAAATAGCTTTATCCGGCACTCATATTACAACCAGTTCTTCCGCTTAAAGTACAGATACGGTGCCAGGCCCGCGAGGATCATAAAGATAATCGCGGCAGGGTAGCCGAAGCTCCACTTCAGTTCTGGCATAAACTCAAAGTTCATGCCATAGCTGGAAGCAACGAGCGTCGGCGGCAGGAATACCACGGATACCACCGAGAAGATTTTGATGATGCGGTTCTGCTCGATGTTGATAAAACCCATTGCCGCCTGCATCAGGAAGTTCACCTTCTGGAACAGGGATTCGTTATGCGGCAGCAGGGATTCGATATCTCGCAGGATTTCACGCGCCTGCTCCAGTTGCCCACCCGGTAAACGCGCTTTACGCACCAGGAAGTTGAGCGCGCGCTGGGTATCCATCAGACACAGGCGAACTTTCCAGCCGATATCTTCCAGTTCCGCCAGAGTGGAGAGCGCCTCGTCGTACTCATCGCCCTGATGCCCTTCCATAATCACCCGGCTCAACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACGAAAAGCGGGCAGTTCACGCTCACGCAGAGTAAACAGACGACCATCACGGATGGTAAATGCCACAGTGGAGTTACCGGCGTGATCTTCCGCATCTTCAAAGAAGAAGAAGGAGTGAATATGCAGGCCGTCGTCGTCTTCAAAGAAACGTGCCGATGCTTCGATGTCTTCCAGTTCCGGGCGGGTTGCCAGGCTCTGGC	NA	NA	NA	NA
>prophage 8
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	2630215	2694871	4682556	integrase,tail,plate,tRNA	Shigella_phage(42.86%)	69	2630345:2630360	2698647:2698662
VDZ00928.1|2630215_2630800_+|tRNA	Peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
2630345:2630360	attL	AAATTCTTTGGTTATA	NA	NA	NA	NA
VDZ00930.1|2630916_2632008_+	GTP-binding protein	NA	NA	NA	NA	NA
VDZ00932.1|2632252_2632432_-	membrane protein	NA	NA	NA	NA	NA
VDZ00934.1|2632776_2635644_+	outer membrane autotransporter	NA	NA	NA	NA	NA
VDZ00936.1|2635743_2637663_-	PTS-dependent dihydroxyacetone kinase operon regulator (sigma-54 dependent transcriptional regulator)	NA	NA	NA	NA	NA
VDZ00938.1|2637890_2638961_+	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit	NA	NA	NA	NA	NA
VDZ00940.1|2638971_2639604_+	dihydroxyacetone kinase subunit DhaL	NA	NA	NA	NA	NA
VDZ00942.1|2639614_2641033_+	dihydroxyacetone kinase subunit M	NA	NA	NA	NA	NA
VDZ00944.1|2641352_2643050_+	periplasmic trehalase	NA	NA	NA	NA	NA
VDZ00946.1|2643128_2643569_-	protein	NA	NA	NA	NA	NA
VDZ00948.1|2643746_2644001_-	transglycosylase associated protein	NA	NA	NA	NA	NA
VDZ00950.1|2644201_2644936_+	protein involved in flagellar function	NA	NA	NA	NA	NA
VDZ00952.1|2644937_2645549_-	membrane-bound lytic murein transglycosylase E	NA	NA	NA	NA	NA
VDZ00954.1|2645648_2646563_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
VDZ00956.1|2646657_2648394_+	cell volume regulation protein A	NA	NA	NA	NA	NA
VDZ00958.1|2648527_2648677_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ00960.1|2648779_2649850_-	alanine racemase, catabolic	NA	NA	NA	NA	NA
VDZ00962.1|2649859_2651158_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
VDZ00964.1|2651487_2653020_+	SpoVR family protein	NA	NA	NA	NA	NA
VDZ00966.1|2653071_2653791_-	fatty acid metabolism regulator protein	NA	NA	NA	NA	NA
VDZ00968.1|2654011_2655553_+	sodium/proton antiporter	NA	NA	NA	NA	NA
VDZ00970.1|2655698_2656229_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
VDZ00972.1|2656274_2657543_-	SOS mutagenesis and repair protein	NA	I6RSM4	Salmonella_phage	83.4	7.9e-210
VDZ00974.1|2657542_2657962_-	SOS mutagenesis and repair protein	NA	A0A1W6JNS2	Morganella_phage	62.1	6.9e-38
VDZ00976.1|2658334_2659246_+	hemolysin E	NA	NA	NA	NA	NA
VDZ00978.1|2659452_2659899_-	putative cytoplasmic protein YcgN	NA	NA	NA	NA	NA
VDZ00980.1|2659990_2660650_-	putative hydrolase	NA	NA	NA	NA	NA
VDZ00982.1|2660721_2661015_-	putative cytoplasmic protein YcgL	NA	NA	NA	NA	NA
VDZ00984.1|2661256_2661658_+	protein YcgK	NA	NA	NA	NA	NA
VDZ00986.1|2661760_2662129_-	Fels-1 Propage domain-containing protein	NA	NA	NA	NA	NA
VDZ00988.1|2662648_2663344_+	septum formation inhibitor	NA	NA	NA	NA	NA
VDZ00990.1|2663366_2664179_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
VDZ00992.1|2664182_2664449_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
VDZ00994.1|2665799_2666084_+	conserved protein, UPF0757 family	NA	NA	NA	NA	NA
VDZ00996.1|2666093_2666423_+	protein	NA	NA	NA	NA	NA
VDZ00998.1|2666505_2667522_-	protein, C-ter fragment, truncated protein	NA	A0A2L1IV18	Escherichia_phage	45.4	3.2e-76
VDZ01000.1|2667606_2669127_-	putative outer membrane autotransporter barrel, putative pectin lyase fold	NA	NA	NA	NA	NA
VDZ01002.1|2669526_2669745_-	inner membrane protein that interacts with cell division proteins	NA	NA	NA	NA	NA
VDZ01004.1|2669876_2671400_-	putative signal transduction protein	NA	NA	NA	NA	NA
VDZ01006.1|2671731_2671980_-	protein involved in biofilm formation	NA	NA	NA	NA	NA
VDZ01008.1|2672092_2672359_-	regulator of acid resistance, influenced by indole	NA	NA	NA	NA	NA
VDZ01010.1|2672702_2672939_-	protein	NA	NA	NA	NA	NA
VDZ01012.1|2673252_2673516_+	putative signal transduction protein	NA	NA	NA	NA	NA
VDZ01014.1|2673472_2674459_+	putative signal transduction protein	NA	NA	NA	NA	NA
VDZ01016.1|2674620_2675352_+	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	50.5	2.7e-53
VDZ01018.1|2675572_2675977_+	protein	NA	NA	NA	NA	NA
VDZ01020.1|2677100_2677265_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	96.3	4.2e-23
VDZ01022.1|2678082_2679972_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VDZ01024.1|2680005_2680197_-	DNA invertase from prophage CP-933H	NA	A0A1S6L009	Salmonella_phage	81.2	1.2e-13
VDZ01026.1|2680226_2680613_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ01028.1|2680614_2681052_+	CPS-53 (KpLE1) prophage protein	NA	A0A0F7LDZ0	Escherichia_phage	66.9	7.2e-46
VDZ01030.1|2681023_2681419_-|tail	tail fiber assembly protein	tail	A0A0M4S6V4	Salmonella_phage	43.5	3.5e-15
VDZ01032.1|2681427_2682372_-|plate	putative phage baseplate protein	plate	U5P424	Shigella_phage	96.8	9.9e-117
VDZ01034.1|2682358_2682784_-|tail	bacteriophage V tail protein	tail	U5P0R9	Shigella_phage	99.3	3.9e-81
VDZ01036.1|2682783_2683332_-|plate	putative phage baseplate protein	plate	U5P081	Shigella_phage	96.2	5.2e-94
VDZ01038.1|2683331_2684411_-|tail	putative phage tail protein	tail	U5P0H6	Shigella_phage	99.7	3.4e-206
VDZ01040.1|2684407_2685736_-	Tail/DNA circulation protein	NA	Q8SBG8	Shigella_phage	97.1	3.3e-243
VDZ01042.1|2685797_2686328_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ01044.1|2686419_2688252_-|tail	bacteriophage V tail protein	tail	Q8SBG9	Shigella_phage	97.5	4.8e-301
VDZ01046.1|2688393_2688663_-	phage protein	NA	M1FPE4	Enterobacteria_phage	98.9	6.0e-43
VDZ01048.1|2688662_2689019_-	phage protein	NA	U5P076	Shigella_phage	100.0	5.3e-63
VDZ01050.1|2689055_2690237_-	phage O protein family	NA	U5P0A0	Shigella_phage	88.2	3.9e-94
VDZ01052.1|2690259_2690508_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA	NA
VDZ01054.1|2690643_2691330_+	Cro/CI family transcriptional regulator	NA	A0A0N7C1P9	Escherichia_phage	42.0	2.1e-39
VDZ01056.1|2691312_2692203_-	DNA polymerase III subunit epsilon	NA	U3PB51	Vibrio_phage	31.6	4.5e-34
VDZ01058.1|2692616_2692892_+	Uncharacterised protein	NA	Q8SBF7	Shigella_phage	97.8	7.0e-47
VDZ01060.1|2692809_2693055_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ01062.1|2693517_2693763_+	Excisionase domain protein	NA	NA	NA	NA	NA
VDZ01064.1|2693743_2694871_+|integrase	e14 prophage; predicted integrase	integrase	O21925	Phage_21	61.2	7.2e-122
2698647:2698662	attR	TATAACCAAAGAATTT	NA	NA	NA	NA
>prophage 9
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	3284686	3357127	4682556	terminase,integrase,head,tail,coat,lysis,portal,protease,tRNA,capsid,transposase	Enterobacteria_phage(48.84%)	73	3307798:3307844	3346921:3346967
VDZ02134.1|3284686_3284827_-|transposase	transposase	transposase	NA	NA	NA	NA
VDZ02136.1|3284849_3285962_-|transposase	IS186, transposase	transposase	NA	NA	NA	NA
VDZ02138.1|3286643_3287762_+	carboxylate-amine ligase	NA	NA	NA	NA	NA
VDZ02140.1|3287827_3288076_+	membrane protein YbdJ	NA	NA	NA	NA	NA
VDZ02142.1|3288140_3288509_+	putative cytoplasmic protein YjbR	NA	NA	NA	NA	NA
VDZ02144.1|3288602_3289256_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
VDZ02146.1|3289363_3290611_+	putative mechanosensitive ion channel protein	NA	NA	NA	NA	NA
VDZ02148.1|3290691_3292068_-	phenylalanine transporter	NA	NA	NA	NA	NA
VDZ02150.1|3292169_3295313_-	cation efflux system protein	NA	S5VTK5	Leptospira_phage	22.1	9.8e-60
VDZ02152.1|3295324_3296548_-	cation efflux system protein	NA	NA	NA	NA	NA
VDZ02154.1|3296563_3296896_-	cation efflux system protein	NA	NA	NA	NA	NA
VDZ02156.1|3296922_3298302_-	copper/silver efflux system outer membrane protein CusC	NA	NA	NA	NA	NA
VDZ02158.1|3298458_3298758_+	two-component system response regulator	NA	W8CYM9	Bacillus_phage	34.4	1.3e-06
VDZ02160.1|3298733_3299141_+	two-component system response regulator	NA	NA	NA	NA	NA
VDZ02162.1|3299130_3300573_+	sensor kinase CusS	NA	A0A1V0SGX0	Hokovirus	26.2	3.0e-11
VDZ02164.1|3300722_3302960_+	bacteriophage N4 adsorption protein B	NA	NA	NA	NA	NA
VDZ02166.1|3302946_3305919_+	bacteriophage N4 receptor, outer membrane subunit	NA	NA	NA	NA	NA
VDZ02168.1|3305919_3306810_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02170.1|3306992_3307754_+	porin thermoregulatory protein	NA	NA	NA	NA	NA
3307798:3307844	attL	AATGGCGCGCCCTGCAGGATTCGAACCTGCGGCCCACGACTTAGAAG	NA	NA	NA	NA
VDZ02172.1|3308267_3309221_+|protease	outer membrane protease	protease	NA	NA	NA	NA
VDZ02174.1|3309470_3310220_-	DNA-binding transcriptional activator	NA	NA	NA	NA	NA
VDZ02176.1|3311317_3311749_+	methylase	NA	NA	NA	NA	NA
VDZ02178.1|3312387_3315351_-|tail	putative tail fiber protein	tail	A0A0K2FIZ6	Escherichia_phage	92.3	2.6e-54
VDZ02179.1|3315415_3316015_-	outer membrane precursor Lom	NA	A0A291AWV3	Escherichia_phage	98.0	3.7e-109
VDZ02181.1|3316085_3319499_-|tail	tail component of prophage CP-933K	tail	K7PKJ2	Enterobacteria_phage	97.1	0.0e+00
VDZ02183.1|3319559_3320132_-|tail	phage tail assembly protein	tail	A0A0K2FJB0	Escherichia_phage	99.5	6.7e-84
VDZ02185.1|3320128_3320872_-|tail	putative tail fiber component K of prophage	tail	K7PLW1	Enterobacteria_phage	96.8	2.5e-147
VDZ02187.1|3320877_3321576_-|tail	phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	98.7	2.8e-132
VDZ02189.1|3321575_3321905_-|tail	Minor tail protein M	tail	A0A0K2FIE9	Enterobacteria_phage	98.2	8.1e-58
VDZ02191.1|3321901_3324463_-|tail	tail component of prophage	tail	A0A2R9YJM8	Escherichia_phage	90.0	0.0e+00
VDZ02193.1|3324455_3324890_-|tail	minor tail protein T	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	1.5e-64
VDZ02195.1|3324871_3325294_-|tail	phage minor tail protein	tail	A0A0K2FIQ8	Enterobacteria_phage	99.3	1.9e-72
VDZ02197.1|3325309_3326050_-|tail	Major tail protein V	tail	A0A0K2FJ05	Enterobacteria_phage	97.6	1.8e-129
VDZ02199.1|3326057_3326453_-|tail	phage minor tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	99.2	2.2e-70
VDZ02201.1|3326449_3327028_-|tail	minor tail protein	tail	A0A2R9YJK4	Escherichia_phage	97.4	1.3e-79
VDZ02203.1|3327039_3327393_-|capsid	minor capsid protein	capsid	A0A2R9YJJ5	Escherichia_phage	98.3	4.4e-62
VDZ02205.1|3327404_3327800_-	DNA packaging protein from bacteriophage origin	NA	A0A2R9YJP4	Escherichia_phage	95.5	5.7e-58
VDZ02207.1|3327841_3328867_-|head,coat	phage major head protein (major coat protein)	head,coat	C6ZCY2	Enterobacteria_phage	97.7	1.4e-188
VDZ02209.1|3328922_3329255_-	Head decoration protein from bacteriophage origin	NA	A0A2R9YJN3	Escherichia_phage	97.3	5.5e-54
VDZ02211.1|3329264_3330584_-|capsid	minor capsid protein C from bacteriophage origin	capsid	A0A2I6TC87	Escherichia_phage	98.2	3.4e-232
VDZ02213.1|3330564_3332166_-|capsid,portal	phage portal protein (minor capsid protein)	capsid,portal	A0A0K2FJC0	Enterobacteria_phage	99.1	4.2e-309
VDZ02215.1|3332162_3332369_-|head,tail	head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
VDZ02217.1|3332365_3334291_-|terminase	phage terminase large subunit	terminase	A0A0K2FJ14	Enterobacteria_phage	100.0	0.0e+00
VDZ02219.1|3334265_3334811_-	prophage qsr' DNA packaging protein NU1-like protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	4.0e-94
VDZ02221.1|3335558_3335765_-	DLP12 prophage; predicted protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
VDZ02223.1|3336050_3336461_+	putative envelope protein	NA	C6ZCX4	Enterobacteria_phage	98.5	1.2e-71
VDZ02225.1|3336751_3337045_+	lambdoid prophage DLP12 Bor-like protein	NA	A0A2R2X2B2	Escherichia_phage	97.9	5.7e-47
VDZ02227.1|3337076_3337538_-|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	97.4	3.9e-74
VDZ02229.1|3337534_3338032_-	phage lysozome	NA	M1FJA0	Enterobacteria_phage	98.2	1.1e-90
VDZ02231.1|3338031_3338247_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
VDZ02233.1|3338819_3339917_+	outer membrane porin; DLP12 prophage	NA	Q1MVN1	Enterobacteria_phage	76.5	2.2e-155
VDZ02235.1|3340106_3340490_-	lambdoid prophage DLP12 antitermination protein Q	NA	A0A088CD47	Shigella_phage	84.2	4.0e-56
VDZ02237.1|3340575_3340713_-	DLP12 prophage; small protein	NA	K7PHH3	Enterobacteria_phage	70.7	2.4e-08
VDZ02239.1|3340712_3341075_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	96.5	4.3e-60
VDZ02241.1|3341071_3341362_-	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	94.8	4.3e-47
VDZ02243.1|3341354_3341525_-	prophage protein NinE	NA	NA	NA	NA	NA
VDZ02245.1|3341524_3341980_-	DLP12 prophage; DNA base-flipping protein	NA	I6PD71	Cronobacter_phage	68.2	1.7e-61
VDZ02247.1|3342517_3342652_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02249.1|3342908_3343430_-	Uncharacterised protein	NA	A0A1S6L018	Salmonella_phage	32.7	4.8e-12
VDZ02251.1|3343778_3344855_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VDZ02253.1|3345073_3345481_-|integrase	putative integrase	integrase	Q716C2	Shigella_phage	94.9	5.5e-64
VDZ02255.1|3345693_3345996_-|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
VDZ02257.1|3346196_3346907_+|integrase	site-specific recombinase, phage integrase family protein	integrase	A0A088CD23	Shigella_phage	87.7	5.9e-122
VDZ02259.1|3347241_3347874_+	two component transcriptional regulator, LuxR family	NA	NA	NA	NA	NA
3346921:3346967	attR	AATGGCGCGCCCTGCAGGATTCGAACCTGCGGCCCACGACTTAGAAG	NA	NA	NA	NA
VDZ02261.1|3347876_3348392_-	fimbrial protein	NA	NA	NA	NA	NA
VDZ02263.1|3348402_3349410_-	fimbrial protein	NA	NA	NA	NA	NA
VDZ02265.1|3349422_3352032_-	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
VDZ02267.1|3352062_3352755_-	fimbrial chaperone	NA	NA	NA	NA	NA
VDZ02269.1|3352974_3353517_-	fimbrial-like protein	NA	NA	NA	NA	NA
VDZ02271.1|3353900_3354863_+	5,10-methylene-tetrahydrofolate dehydrogenase	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.9e-30
VDZ02273.1|3354864_3355077_+	putative RNA-binding protein	NA	NA	NA	NA	NA
VDZ02275.1|3355184_3355706_+	putative membrane-bound metal-dependent hydrolase	NA	NA	NA	NA	NA
VDZ02277.1|3355741_3357127_-|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
>prophage 10
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	3585316	3645141	4682556	integrase,transposase,holin	Shigella_phage(27.27%)	56	3620009:3620059	3653482:3653532
VDZ02702.1|3585316_3587350_-|holin	high-affinity choline transport protein (BCCT-family transporter)	holin	A0A2I7QNT1	Vibrio_phage	27.4	3.4e-21
VDZ02704.1|3587478_3588066_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
VDZ02706.1|3588079_3589552_+	betaine aldehyde dehydrogenase	NA	NA	NA	NA	NA
VDZ02708.1|3589565_3591236_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	4.7e-61
VDZ02710.1|3591448_3592117_+	inner membrane protein	NA	NA	NA	NA	NA
VDZ02712.1|3592359_3593055_-	transporter	NA	NA	NA	NA	NA
VDZ02714.1|3593047_3594475_-	putative electron transport protein YkgF	NA	NA	NA	NA	NA
VDZ02716.1|3594485_3595205_-	hydroxyacid oxidoreductase (Fe-S centre)	NA	NA	NA	NA	NA
VDZ02718.1|3595731_3596586_-	transcriptional regulator YkgD	NA	NA	NA	NA	NA
VDZ02720.1|3596810_3598136_+	putative pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.6	2.5e-113
VDZ02723.1|3598492_3599086_+	inner membrane protein	NA	NA	NA	NA	NA
VDZ02725.1|3599675_3600032_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VDZ02727.1|3600178_3600526_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VDZ02729.1|3600482_3600641_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02731.1|3600665_3601253_-	Ig domain-containing protein	NA	NA	NA	NA	NA
VDZ02734.1|3601249_3602908_-	Ig domain-containing protein	NA	NA	NA	NA	NA
VDZ02736.1|3604022_3604124_+	small predicted membrane protein	NA	NA	NA	NA	NA
VDZ02738.1|3604484_3604751_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
VDZ02740.1|3604750_3604891_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
VDZ02742.1|3605976_3606519_+	putative fimbrial transcriptional regulator	NA	NA	NA	NA	NA
VDZ02744.1|3606593_3607181_+	fimbrillin	NA	NA	NA	NA	NA
VDZ02746.1|3607238_3607907_+	putative fimbrial protein	NA	NA	NA	NA	NA
VDZ02748.1|3607932_3610458_+	putative fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
VDZ02750.1|3610447_3611545_+	putative fimbrial protein	NA	NA	NA	NA	NA
VDZ02752.1|3611719_3612091_+	putative fimbrial protein	NA	NA	NA	NA	NA
VDZ02754.1|3612059_3612770_+	putative fimbrial protein	NA	NA	NA	NA	NA
VDZ02756.1|3613659_3614274_-	integral membrane protein	NA	NA	NA	NA	NA
VDZ02758.1|3614691_3615381_+	putative xanthine dehydrogenase, iron-sulfur binding subunit	NA	NA	NA	NA	NA
VDZ02760.1|3615377_3616334_+	putative xanthine dehydrogenase, FAD-binding subunit	NA	NA	NA	NA	NA
VDZ02762.1|3616330_3618529_+	putative xanthine dehydrogenase, molybdenum-binding subunit	NA	A0A0P0I429	Acinetobacter_phage	25.8	2.5e-38
VDZ02764.1|3618538_3619495_+	xanthine dehydrogenase accessory factor	NA	NA	NA	NA	NA
VDZ02766.1|3619473_3619884_+	transcriptional regulator	NA	NA	NA	NA	NA
3620009:3620059	attL	AATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAATGCG	NA	NA	NA	NA
VDZ02768.1|3620147_3621221_+	Shufflon-specific DNA recombinase	NA	W6MYA3	Pseudomonas_phage	38.9	3.8e-48
VDZ02770.1|3621408_3621702_-	IS1 protein InsB	NA	U5P0U6	Shigella_phage	91.8	7.0e-45
VDZ02772.1|3622413_3623838_+	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA	NA
VDZ02774.1|3623827_3625114_+	putative capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
VDZ02776.1|3625115_3625673_+	polysaccharide export protein	NA	NA	NA	NA	NA
VDZ02778.1|3625675_3627808_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
VDZ02780.1|3627804_3629016_+	capsular polysacharride biosynthesis protein	NA	NA	NA	NA	NA
VDZ02782.1|3629012_3630398_+	capsular polysacharride biosynthesis protein	NA	NA	NA	NA	NA
VDZ02784.1|3630387_3631377_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
VDZ02786.1|3631390_3632602_+	group 1 glycosyl transferase	NA	A0A2P0VNG4	Tetraselmis_virus	33.1	3.1e-14
VDZ02788.1|3632603_3633716_+	group 1 glycosyl transferase	NA	NA	NA	NA	NA
VDZ02790.1|3633718_3634126_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02792.1|3634148_3635552_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02794.1|3635599_3636619_-	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	46.5	4.3e-81
VDZ02796.1|3636695_3637622_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02798.1|3638372_3638666_+	IS1 protein InsB	NA	U5P0U6	Shigella_phage	91.8	7.0e-45
VDZ02800.1|3639064_3639418_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02802.1|3639404_3639632_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02804.1|3639837_3641223_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02806.1|3641483_3642350_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.2	4.3e-50
VDZ02808.1|3642346_3642646_-|transposase	transposase	transposase	NA	NA	NA	NA
VDZ02810.1|3642767_3642980_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ02812.1|3643438_3644515_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VDZ02814.1|3644733_3645141_-|integrase	putative integrase	integrase	Q716C2	Shigella_phage	94.9	5.5e-64
3653482:3653532	attR	AATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAATGCG	NA	NA	NA	NA
>prophage 11
LR134082	Escherichia coli strain NCTC9038 genome assembly, chromosome: 1	4682556	4008653	4064675	4682556	integrase,transposase	Shigella_phage(35.29%)	63	NA	NA
VDZ03451.1|4008653_4008956_+|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	1.2e-44
VDZ03453.1|4009168_4009801_+|transposase	putative transposase	transposase	Q716C2	Shigella_phage	96.2	2.0e-121
VDZ03455.1|4009797_4010469_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ03457.1|4010964_4011129_-	protein YjiS	NA	NA	NA	NA	NA
VDZ03459.1|4011305_4012718_+	fused DNA-binding transcriptional regulator; aminotransferase	NA	NA	NA	NA	NA
VDZ03461.1|4012960_4013905_-|transposase	transposase	transposase	Q2A0A7	Sodalis_phage	52.9	1.8e-62
VDZ03463.1|4014371_4015604_+	multidrug resistance protein	NA	NA	NA	NA	NA
VDZ03465.1|4015644_4016925_+	inner membrane protein	NA	NA	NA	NA	NA
VDZ03467.1|4017040_4018192_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
VDZ03469.1|4018201_4018969_+	ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
VDZ03471.1|4018965_4019223_+	Protein of uncharacterised function (DUF3343)	NA	NA	NA	NA	NA
VDZ03473.1|4019176_4020148_+	SdiA-regulated domain protein	NA	NA	NA	NA	NA
VDZ03475.1|4020215_4021394_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
VDZ03477.1|4021406_4021961_-	RNA 2'-phosphotransferase-like protein	NA	A0A2R2ZGT8	Clostridioides_phage	45.6	2.0e-37
VDZ03479.1|4022210_4022894_+	putative transporter	NA	NA	NA	NA	NA
VDZ03481.1|4022890_4023352_+	putative transporter	NA	NA	NA	NA	NA
VDZ03483.1|4023364_4024537_+	isoaspartyl dipeptidase	NA	NA	NA	NA	NA
VDZ03485.1|4024601_4025513_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VDZ03487.1|4025505_4025898_-	DNA replication/recombination/repair protein	NA	NA	NA	NA	NA
VDZ03489.1|4026215_4026317_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ03491.1|4026570_4027401_+	Protein of uncharacterised function (DUF2686)	NA	NA	NA	NA	NA
VDZ03493.1|4027541_4028267_-	uxu operon transcriptional regulator	NA	NA	NA	NA	NA
VDZ03495.1|4028313_4028508_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ03497.1|4028529_4029990_-	D-mannonate oxidoreductase, NAD-binding	NA	H8ZJP8	Ostreococcus_tauri_virus	31.9	3.6e-49
VDZ03499.1|4030070_4031255_-	mannonate dehydratase	NA	NA	NA	NA	NA
VDZ03501.1|4031594_4031705_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ03503.1|4032041_4032944_-	FimH protein	NA	NA	NA	NA	NA
VDZ03505.1|4032963_4033467_-	P pilus assembly protein, pilin FimA	NA	NA	NA	NA	NA
VDZ03507.1|4033479_4034010_-	FimF protein	NA	NA	NA	NA	NA
VDZ03509.1|4034019_4036656_-	outer membrane usher protein FimD	NA	NA	NA	NA	NA
VDZ03511.1|4036722_4037448_-	type I fimbrial chaperone	NA	NA	NA	NA	NA
VDZ03513.1|4037484_4037982_-	type-1 fimbrial protein FimI	NA	NA	NA	NA	NA
VDZ03515.1|4038088_4038637_-	fimbrial protein	NA	NA	NA	NA	NA
VDZ03517.1|4039117_4039714_-	tyrosine recombinase	NA	A0A2L1IV36	Escherichia_phage	53.4	3.9e-50
VDZ03519.1|4040191_4040794_-	tyrosine recombinase	NA	A0A2L1IV36	Escherichia_phage	52.3	3.1e-55
VDZ03521.1|4042249_4042966_+	N-acetylneuraminic acid outer membrane porin	NA	NA	NA	NA	NA
VDZ03523.1|4042985_4044092_+	N-acetylneuraminic acid mutarotase	NA	NA	NA	NA	NA
VDZ03525.1|4044156_4045137_+	YjhS protein	NA	Q08JA2	Stx2-converting_phage	55.6	6.1e-101
VDZ03527.1|4045144_4045795_-	endonuclease	NA	NA	NA	NA	NA
VDZ03529.1|4046173_4046359_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ03531.1|4046839_4046992_-	putative restriction methylase	NA	NA	NA	NA	NA
VDZ03533.1|4047076_4047274_-	Aec78	NA	NA	NA	NA	NA
VDZ03535.1|4047285_4047774_-	aec77	NA	NA	NA	NA	NA
VDZ03537.1|4047770_4048145_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA	NA
VDZ03539.1|4048234_4048603_-	antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage	NA	NA	NA	NA	NA
VDZ03541.1|4048652_4048766_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ03543.1|4048765_4048987_-	CP4-44 prophage	NA	A0A142F0X9	Klebsiella_phage	45.8	1.9e-10
VDZ03545.1|4049049_4049526_-	putative DNA repair protein	NA	NA	NA	NA	NA
VDZ03547.1|4050060_4050354_-	IS1 protein InsB	NA	U5P0U6	Shigella_phage	87.9	7.2e-42
VDZ03549.1|4050839_4051361_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
VDZ03551.1|4051357_4052311_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA	NA
VDZ03553.1|4052397_4054722_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VDZ03555.1|4054766_4055669_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VDZ03557.1|4055665_4056664_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VDZ03559.1|4056660_4057617_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
VDZ03561.1|4057617_4058385_+	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VDZ03563.1|4058942_4059086_-	KpLE2 phage-like element, protein	NA	NA	NA	NA	NA
VDZ03565.1|4059125_4059368_-|transposase	putative transposase	transposase	Q716C2	Shigella_phage	92.4	4.7e-39
VDZ03567.1|4059364_4059778_-|transposase	transposase ORF B (fragment), IS911	transposase	Q716C2	Shigella_phage	95.6	1.5e-61
VDZ03569.1|4060093_4061245_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
VDZ03571.1|4061164_4061515_-|transposase	transposase ORF A, IS3 family	transposase	Q716C1	Shigella_phage	97.7	8.9e-39
VDZ03573.1|4061584_4063285_-|integrase	phage integrase site specific recombinase	integrase	NA	NA	NA	NA
VDZ03575.1|4063655_4064675_+	oxidoreductase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.4	1.9e-44
