bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	1.2|865207|35|LR134084|PILER-CR	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.29	35	2	0	1	35	24186	24152	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	24152-24186	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	1.2|865207|35|LR134084|PILER-CR	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.29	35	2	0	1	35	72909	72875	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	72875-72909	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	1.2|865207|35|LR134084|PILER-CR	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.29	35	2	0	1	35	172282	172248	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	172248-172282	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	1.2|865207|35|LR134084|PILER-CR	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.29	35	2	0	1	35	172338	172304	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	172304-172338	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	1.2|865207|35|LR134084|PILER-CR	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.29	35	2	0	1	35	811926	811892	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	811892-811926	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	1.2|865207|35|LR134084|PILER-CR	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.29	35	2	0	1	35	847509	847475	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	847475-847509	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	1.2|865207|35|LR134084|PILER-CR	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.29	35	2	0	1	35	1656881	1656915	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	1656881-1656915	GCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGT	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	1.2|865207|35|LR134084|PILER-CR	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.29	35	2	0	1	35	2439742	2439708	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-08	50.7	1.0	GCTGGCGGAAAGGCAGCATACAATAATGTGCAAGT	2439708-2439742	ACTTGCACATTATTGTAAGCTGACTTTCCGCCAGC	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2.1|1255073|26|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	26	0	0	1	26	1656863	1656888	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-06	42.8	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	1656863-1656888	CGGGGCCCCAACATAGAAGCTGGCGG	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2.1|1255073|26|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	96.15	26	1	0	1	26	24204	24179	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	24179-24204	CCGCCAGCTACTATGTTGGGGCCCCG	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2.1|1255073|26|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	96.15	26	1	0	1	26	172300	172275	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	172275-172300	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	2.1|1255073|26|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	92.31	26	2	0	1	26	2410603	2410628	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	2410603-2410628	CGGGGCCCCAACACAGAAGCTGACGG	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	29	0	0	1	29	394811	394783	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	394783-394811	TTTCGAAAAGAAATTCTACAGGCAATGCG	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	29	0	0	1	29	604424	604396	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	604396-604424	TTTCGAAAAGAAATTCTACAGGCAATGCG	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	29	0	0	1	29	632016	631988	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	631988-632016	TTTCGAAAAGAAATTCTACAGGCAATGCG	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	29	0	0	1	29	803026	803054	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	803026-803054	CGCATTGCCTGTAGAATTTCTTTTCGAAA	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	29	0	0	1	29	2711617	2711645	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	2711617-2711645	CGCATTGCCTGTAGAATTTCTTTTCGAAA	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	29	0	0	1	29	2743859	2743887	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-08	47.5	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	2743859-2743887	CGCATTGCCTGTAGAATTTCTTTTCGAAA	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	96.55	29	1	0	1	29	24217	24245	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-07	44.4	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	24217-24245	CGCATTGCCTGTAGAATTTCATTTCGAAA	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	96.55	29	1	0	1	29	865075	865047	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-07	44.4	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	865047-865075	TTTCGAAAAGAAATTCTACAGGCAGTGCG	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	3.1|1642229|29|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	96.55	29	1	0	1	29	1456184	1456212	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	5e-07	44.4	1.0	CGCATTGCCTGTAGAATTTCTTTTCGAAA	1456184-1456212	CGCATTGCCTGTAGAATTTCTTTCCGAAA	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	6.1|2272714|25|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	25	0	0	1	25	2272770	2272794	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	4e-06	41.2	1.0	TGTCAGCTTCTGTGTTGGGGCCCCG	2272770-2272794	TGTCAGCTTCTGTGTTGGGGCCCCG	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	6.1|2272714|25|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	92.00	25	2	0	1	25	1849141	1849165	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	4e-04	34.9	1.0	TGTCAGCTTCTGTGTTGGGGCCCCG	1849141-1849165	TGTCAGCTTTTATGTTGGGGCCCCG	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	8.1|2512693|18|LR134084|CRT	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	18	0	0	1	18	2509047	2509064	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	0.009	30.1	1.0	GGTTTACCAGGTTCAGCT	2509047-2509064	GGTTTACCAGGTTCAGCT	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	8.1|2512693|18|LR134084|CRT	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.44	18	1	0	1	18	1637549	1637566	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	0.085	26.9	1.0	GGTTTACCAGGTTCAGCT	1637549-1637566	GGTTTACCACGTTCAGCT	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	8.2|2512735|18|LR134084|CRT	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	88.89	18	2	0	1	18	2509215	2509232	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	0.77	23.8	1.0	GGTGTGCCTGGCTCACTT	2509215-2509232	GGTTCGCCTGGCTCACTT	2
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	8.4|2512828|18|LR134084|CRT	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	94.44	18	1	0	1	18	2509131	2509148	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	0.085	26.9	1.0	GGTGTTTCCGGCTCACTC	2509131-2509148	GGCGTTTCCGGCTCACTC	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	8.6|2512912|18|LR134084|CRT	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	18	0	0	1	18	2509173	2509190	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	0.009	30.1	1.0	GGTGTTTCCGGCTCACTT	2509173-2509190	GGTGTTTCCGGCTCACTT	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	8.6|2512912|18|LR134084|CRT	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	18	0	0	1	18	2509257	2509274	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	0.009	30.1	1.0	GGTGTTTCCGGCTCACTT	2509257-2509274	GGTGTTTCCGGCTCACTT	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	8.6|2512912|18|LR134084|CRT	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	18	0	0	1	18	2509299	2509316	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	0.009	30.1	1.0	GGTGTTTCCGGCTCACTT	2509299-2509316	GGTGTTTCCGGCTCACTT	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	8.6|2512912|18|LR134084|CRT	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	18	0	0	1	18	2509383	2509400	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	0.009	30.1	1.0	GGTGTTTCCGGCTCACTT	2509383-2509400	GGTGTTTCCGGCTCACTT	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	9.1|2743768|26|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	100.00	26	0	0	1	26	1656888	1656863	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-06	42.8	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	1656863-1656888	CGGGGCCCCAACATAGAAGCTGGCGG	0
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	9.1|2743768|26|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	96.15	26	1	0	1	26	24179	24204	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	24179-24204	CCGCCAGCTACTATGTTGGGGCCCCG	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	9.1|2743768|26|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	96.15	26	1	0	1	26	172275	172300	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	172275-172300	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
LR134084	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	9.1|2743768|26|LR134084|CRISPRCasFinder	LR134084.1	Staphylococcus aureus strain NCTC13552 genome assembly, chromosome: 1	92.31	26	2	0	1	26	2410628	2410603	865127-865262|1255043-1255128|1642200-1642286|1925484-1925566|2160526-2160621|2272684-2272768|2335512-2335598|2512669-2512953|2743738-2743823	1e-04	36.5	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	2410603-2410628	CGGGGCCCCAACACAGAAGCTGACGG	2
