The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	309818	320565	2693779	integrase,protease,holin,tail	Staphylococcus_phage(64.29%)	15	309708:309725	320790:320807
309708:309725	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
VDZ34071.1|309818_310163_-|integrase	phage integrase family protein	integrase	A7TWE6	Staphylococcus_phage	99.1	9.4e-57
VDZ34072.1|310171_311023_-|integrase	phage integrase family protein	integrase	A0A1X9H094	Staphylococcus_phage	96.8	3.2e-146
VDZ34073.1|311122_311776_-|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VDZ34074.1|312217_312472_+	phage-like protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	1.3e-42
VDZ34075.1|312471_313938_+|tail	putative phage tail protein	tail	A0A0K1LKC9	Staphylococcus_phage	99.4	2.2e-272
VDZ34076.1|313937_314327_+	phage-like protein	NA	Q4ZCZ7	Staphylococcus_virus	94.6	7.1e-61
VDZ34077.1|314319_314484_+	phage protein	NA	M9QX31	Staphylococcus_phage	94.4	2.1e-22
VDZ34078.1|314597_314768_+	hypothetical phage-related protein	NA	A0A0H3U2R2	Staphylococcus_phage	92.9	5.3e-13
VDZ34079.1|315420_316548_+	type-I specificity determinant subunit	NA	A0A2H4PQP5	Staphylococcus_phage	35.2	8.1e-41
VDZ34080.1|316703_317006_+|holin	holin	holin	B7T0L0	Staphylococcus_virus	94.0	3.8e-46
VDZ34081.1|317017_317137_+	amidase	NA	B7T0L1	Staphylococcus_virus	85.7	2.3e-07
VDZ34082.1|317130_317541_+	amidase	NA	A0A2I6PET7	Staphylococcus_phage	95.5	2.5e-72
VDZ34083.1|317564_318470_+	amidase	NA	A0A2I6PET7	Staphylococcus_phage	97.3	9.7e-170
VDZ34084.1|319525_320113_+	Uncharacterised protein	NA	Q4ZBG7	Staphylococcus_virus	99.5	7.1e-97
VDZ34085.1|320112_320565_+	Uncharacterised protein	NA	B7T0L3	Staphylococcus_virus	100.0	7.9e-72
320790:320807	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	383512	402153	2693779	terminase,transposase	Staphylococcus_phage(60.0%)	28	NA	NA
VDZ34168.1|383512_384979_+	Inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
VDZ34169.1|385003_386545_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.6	1.6e-23
VDZ34170.1|386638_387775_-	Integrase	NA	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
VDZ34171.1|387858_388644_-	transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	34.1	7.5e-09
VDZ34172.1|388761_388989_+	phage protein	NA	NA	NA	NA	NA
VDZ34173.1|389034_389295_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ34174.1|389341_389497_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ34175.1|389481_389685_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
VDZ34176.1|389686_390070_+	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	97.6	1.1e-63
VDZ34177.1|390070_390388_+	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	9.3e-19
VDZ34178.1|390451_391321_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	94.5	8.4e-163
VDZ34179.1|391334_393044_+	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	95.1	1.3e-311
VDZ34180.1|393374_393755_+	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	98.4	1.2e-68
VDZ34181.1|393751_394393_+	mobile element-associated protein, putative	NA	Q4ZE67	Staphylococcus_phage	95.3	5.9e-113
VDZ34182.1|394739_395081_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	99.1	6.4e-58
VDZ34183.1|395092_395671_+|transposase	transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	37.4	2.2e-26
VDZ34184.1|395688_395907_+	hypothetical mobile element-associated protein	NA	NA	NA	NA	NA
VDZ34185.1|395909_396485_+	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	96.0	3.5e-88
VDZ34186.1|396615_396828_+|transposase	transposase	transposase	Q4ZE86	Staphylococcus_phage	91.4	1.3e-29
VDZ34187.1|396824_397394_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	96.8	6.6e-100
VDZ34188.1|397548_397662_-	toxic shock syndrome toxin-1	NA	NA	NA	NA	NA
VDZ34189.1|397877_398252_-	toxic shock syndrome toxin-1	NA	NA	NA	NA	NA
VDZ34190.1|398712_399063_+	pathogenicity island protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	62.4	1.3e-18
VDZ34191.1|399180_399693_+	pathogenicity island protein	NA	Q4ZE83	Staphylococcus_phage	99.4	1.9e-69
VDZ34192.1|399708_399888_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ34193.1|400464_401265_+	enterotoxin C-bovine	NA	A0A097PAT7	Streptococcus_pyogenes_phage	44.2	2.8e-51
VDZ34194.1|401431_401572_-	staphylococcal enterotoxin L	NA	NA	NA	NA	NA
VDZ34195.1|401580_402153_-	staphylococcal enterotoxin L	NA	A0A097PAT7	Streptococcus_pyogenes_phage	33.7	1.7e-15
>prophage 3
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	717308	725128	2693779		Hokovirus(16.67%)	10	NA	NA
VDZ34539.1|717308_718364_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
VDZ34540.1|718363_719050_-	Response regulator SaeR	NA	NA	NA	NA	NA
VDZ34541.1|719024_719498_-	DoxX family protein	NA	NA	NA	NA	NA
VDZ34542.1|719839_720280_-	lipoprotein	NA	NA	NA	NA	NA
VDZ34543.1|720559_721144_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ34544.1|721242_721956_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
VDZ34545.1|721959_722379_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	4.9e-07
VDZ34546.1|722380_723049_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
VDZ34547.1|723399_723993_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
VDZ34548.1|723976_725128_+	Para-aminobenzoate synthetase component I	NA	A0A0B5J984	Pandoravirus	35.3	1.6e-23
>prophage 4
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	728264	751552	2693779	holin	uncultured_Caudovirales_phage(33.33%)	17	NA	NA
VDZ34554.1|728264_730205_+	glycerol phosphate lipoteichoic acid synthase	NA	W6LM83	Streptococcus_phage	39.3	3.7e-110
VDZ34555.1|730481_732359_+	ABC transporter	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.5e-55
VDZ34556.1|732370_734152_+	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
VDZ34557.1|734373_734805_+	Glycine betaine ABC transport system, ATP-binding protein OpuAA	NA	G3M9Y6	Bacillus_virus	26.9	1.2e-05
VDZ34558.1|734777_735350_+	Glycine betaine ABC transport system, ATP-binding protein OpuAA	NA	G9BWD6	Planktothrix_phage	39.0	1.5e-06
VDZ34559.1|735342_736857_+|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
VDZ34560.1|737095_738154_+	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
VDZ34561.1|738311_738854_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VDZ34562.1|739459_740377_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
VDZ34563.1|740658_742164_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
VDZ34564.1|742503_743889_-	Integral membrane domain protein	NA	E7DN65	Pneumococcus_phage	71.5	1.6e-51
VDZ34565.1|744689_745088_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
VDZ34566.1|745050_747156_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
VDZ34567.1|747273_748245_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
VDZ34568.1|748837_749851_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	77.7	8.4e-138
VDZ34569.1|749837_750794_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	5.5e-06
VDZ34570.1|750790_751552_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 5
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	841194	847996	2693779	integrase,holin	Staphylococcus_prophage(50.0%)	9	843461:843474	849927:849940
VDZ34673.1|841194_841953_+	Selenocysteine lyase	NA	Q2XUY6	environmental_halophage	42.7	2.2e-58
VDZ34674.1|841900_842437_+	Selenocysteine lyase	NA	Q2XUY6	environmental_halophage	48.8	1.9e-43
VDZ34675.1|842426_842891_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA	NA
VDZ34676.1|843040_843532_+	Scaffold protein sufB	NA	NA	NA	NA	NA
843461:843474	attL	ATTATCTTTAAAGA	NA	NA	NA	NA
VDZ34677.1|843663_844437_+	Scaffold protein sufB	NA	NA	NA	NA	NA
VDZ34678.1|844505_844901_-|integrase	phage-related integrase	integrase	A0A0F6N3M4	Staphylococcus_phage	98.5	1.1e-69
VDZ34679.1|845724_845958_+|holin	Phage holin	holin	Q9MBN5	Staphylococcus_prophage	100.0	1.6e-36
VDZ34680.1|845969_846725_+	Autolysin	NA	Q9MBN4	Staphylococcus_prophage	100.0	3.4e-152
VDZ34681.1|847069_847996_+	leukocidin chain lukM precursor	NA	Q9MBN3	Staphylococcus_prophage	99.0	1.3e-174
849927:849940	attR	TCTTTAAAGATAAT	NA	NA	NA	NA
>prophage 6
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	1006956	1020649	2693779		Synechococcus_phage(30.0%)	17	NA	NA
VDZ34864.1|1006956_1007439_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
VDZ34865.1|1007425_1007644_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
VDZ34866.1|1007640_1008549_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
VDZ34867.1|1008552_1009257_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	40.8	1.5e-45
VDZ34868.1|1009256_1009520_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
VDZ34869.1|1009521_1010193_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VDZ34870.1|1010185_1012375_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.5	3.9e-140
VDZ34871.1|1012353_1013838_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.3	7.9e-44
VDZ34872.1|1013830_1014139_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	46.9	1.0e-14
VDZ34873.1|1014252_1014552_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	44.0	8.8e-11
VDZ34874.1|1014548_1014857_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.9	1.9e-16
VDZ34875.1|1014859_1015426_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	1.4e-28
VDZ34876.1|1015440_1016919_+	IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
VDZ34877.1|1016940_1018188_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
VDZ34878.1|1018453_1018990_-	hydroxymethylpyrimidine transport system permease protein	NA	NA	NA	NA	NA
VDZ34879.1|1019251_1019353_-	Duplicated ATPase component YkoD of energizingmodule of thiamin-regulated ECF transporter	NA	NA	NA	NA	NA
VDZ34880.1|1019479_1020649_-	Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	NA	G3M9Y6	Bacillus_virus	26.3	9.1e-11
>prophage 7
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	1211761	1266128	2693779	protease,transposase,tRNA	Streptococcus_phage(18.18%)	57	NA	NA
VDZ35092.1|1211761_1212682_+|protease	Membrane-associated zinc metalloprotease	protease	NA	NA	NA	NA
VDZ35093.1|1212717_1213005_+|protease	Membrane-associated zinc metalloprotease	protease	NA	NA	NA	NA
VDZ35094.1|1213065_1214226_+|tRNA	Prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VDZ35095.1|1214324_1214621_+|tRNA	Prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VDZ35096.1|1214563_1214767_+|tRNA	Prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VDZ35097.1|1215024_1219341_+	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	5.9e-23
VDZ35098.1|1219630_1220098_+	Putative cytosolic protein	NA	NA	NA	NA	NA
VDZ35099.1|1220118_1221294_+	Transcription termination protein NusA	NA	NA	NA	NA	NA
VDZ35100.1|1221314_1221599_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA	NA
VDZ35101.1|1221595_1221913_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA	NA
VDZ35102.1|1221917_1224035_+	protein translation initiation factor 2 (IF-2)	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
VDZ35103.1|1224421_1224772_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VDZ35104.1|1224941_1225859_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VDZ35105.1|1225873_1226845_+	Riboflavin kinase / FMN adenylyltransferase	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
VDZ35106.1|1226959_1227229_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
VDZ35107.1|1229879_1230335_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
VDZ35108.1|1230331_1231222_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
VDZ35109.1|1231977_1233906_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.5	1.9e-74
VDZ35110.1|1233848_1234220_+	DNA translocase FtsK	NA	W6AT81	Vibrio_phage	38.0	4.0e-05
VDZ35111.1|1234224_1234674_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VDZ35112.1|1234691_1234937_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VDZ35113.1|1234967_1235981_+|protease	Zinc protease	protease	A0A1X9I714	Streptococcus_phage	25.9	1.7e-29
VDZ35114.1|1236082_1236232_+|protease	Zinc protease	protease	NA	NA	NA	NA
VDZ35115.1|1236231_1236372_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ35116.1|1236537_1237068_+	peptidase, M16 family	NA	G3MBJ8	Bacillus_virus	35.4	5.4e-11
VDZ35117.1|1237198_1237555_+	peptidase, M16 family	NA	NA	NA	NA	NA
VDZ35118.1|1237511_1238216_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA	NA
VDZ35119.1|1238320_1239148_+	protein with ACT domain	NA	NA	NA	NA	NA
VDZ35120.1|1239166_1239346_+	DNA-binding protein	NA	NA	NA	NA	NA
VDZ35121.1|1239590_1240169_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
VDZ35122.1|1240641_1240788_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
VDZ35123.1|1240880_1241792_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
VDZ35124.1|1241955_1242921_+	recombinase A	NA	A0A0S2MVG1	Bacillus_phage	69.5	2.8e-122
VDZ35125.1|1243349_1243553_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VDZ35126.1|1243756_1244908_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VDZ35127.1|1245204_1245420_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ35128.1|1245593_1246391_+	Phosphoesterase family protein	NA	NA	NA	NA	NA
VDZ35129.1|1246530_1248291_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA	NA
VDZ35130.1|1248291_1249158_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA	NA
VDZ35131.1|1249250_1249544_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VDZ35132.1|1249865_1251221_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
VDZ35133.1|1251221_1251587_+	membrane protein	NA	NA	NA	NA	NA
VDZ35134.1|1251613_1252105_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
VDZ35135.1|1252407_1254414_+	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
VDZ35136.1|1254434_1255025_+	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
VDZ35137.1|1255037_1256426_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	37.5	1.6e-51
VDZ35138.1|1256476_1257046_+	DNA mismatch repair protein mutL. domain protein	NA	NA	NA	NA	NA
VDZ35139.1|1257060_1257594_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
VDZ35140.1|1258068_1258275_+	Glycerol uptake facilitator protein	NA	NA	NA	NA	NA
VDZ35141.1|1258334_1258886_+	Glycerol uptake facilitator protein	NA	M1HH19	Acanthocystis_turfacea_Chlorella_virus	38.3	1.4e-17
VDZ35142.1|1259015_1260512_+	glycerol kinase	NA	NA	NA	NA	NA
VDZ35143.1|1260669_1262343_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
VDZ35144.1|1262489_1263407_+	hydrolase	NA	NA	NA	NA	NA
VDZ35145.1|1263424_1264360_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
VDZ35146.1|1264374_1264608_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
VDZ35147.1|1264955_1265474_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.5	4.8e-12
VDZ35148.1|1265627_1266128_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 8
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	1541381	1549584	2693779	tRNA	Staphylococcus_phage(16.67%)	8	NA	NA
VDZ35440.1|1541381_1542167_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
VDZ35441.1|1542292_1543183_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
VDZ35442.1|1543192_1544539_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	33.7	4.1e-55
VDZ35443.1|1544652_1545753_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	8.0e-09
VDZ35444.1|1545755_1546433_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
VDZ35445.1|1546563_1547370_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	7.9e-38
VDZ35446.1|1547423_1547669_-	RNA polymerase sigma factor RpoD	NA	NA	NA	NA	NA
VDZ35447.1|1547892_1549584_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.4	1.3e-45
>prophage 9
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	1755209	1828437	2693779	tRNA,bacteriocin,protease	Staphylococcus_phage(96.72%)	77	NA	NA
VDZ35682.1|1755209_1758221_-	FmtB-protein	NA	A0A2H4PQU6	Staphylococcus_phage	55.6	3.1e-135
VDZ35683.1|1758549_1758861_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	8.2e-52
VDZ35684.1|1758882_1761300_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
VDZ35685.1|1761588_1762770_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	2.1e-217
VDZ35686.1|1762879_1763833_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
VDZ35687.1|1763829_1764393_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	5.4e-102
VDZ35688.1|1764512_1764914_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
VDZ35689.1|1765483_1766311_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
VDZ35690.1|1766544_1767546_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	3.4e-184
VDZ35691.1|1767667_1768132_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
VDZ35692.1|1768144_1769326_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	3.3e-226
VDZ35693.1|1769336_1769969_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
VDZ35694.1|1769975_1770380_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	2.1e-71
VDZ35695.1|1770388_1771018_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	97.5	7.8e-110
VDZ35696.1|1771498_1773001_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
VDZ35697.1|1773522_1773837_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
VDZ35698.1|1773836_1775129_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	97.7	3.7e-223
VDZ35699.1|1775146_1775542_+	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	97.7	2.6e-71
VDZ35700.1|1775941_1776796_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
VDZ35701.1|1777071_1777296_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDZ35702.1|1777494_1777965_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	2.2e-80
VDZ35703.1|1778077_1778521_+	comK family protein	NA	NA	NA	NA	NA
VDZ35704.1|1778507_1778951_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
VDZ35705.1|1779248_1779503_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VDZ35706.1|1779551_1779884_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VDZ35707.1|1780307_1780685_-	Transaldolase	NA	NA	NA	NA	NA
VDZ35708.1|1780708_1781020_-	Transaldolase	NA	R9S7J6	Prochlorococcus_phage	38.7	1.8e-06
VDZ35709.1|1781277_1781580_+	membrane protein	NA	NA	NA	NA	NA
VDZ35710.1|1781757_1782018_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	92.7	1.4e-20
VDZ35711.1|1782196_1782550_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
VDZ35712.1|1782798_1783632_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.7e-157
VDZ35713.1|1783842_1784751_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	1.3e-137
VDZ35714.1|1784875_1786069_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
VDZ35715.1|1786439_1787894_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	1.7e-285
VDZ35716.1|1788327_1789098_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	2.3e-140
VDZ35717.1|1789078_1789558_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	1.6e-83
VDZ35718.1|1789617_1789875_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
VDZ35719.1|1789871_1790873_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.4	2.2e-183
VDZ35720.1|1790877_1792356_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	1.8e-282
VDZ35721.1|1792514_1792736_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	97.3	5.8e-36
VDZ35722.1|1793307_1793922_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	62.7	2.9e-24
VDZ35723.1|1794002_1794866_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.1	1.9e-66
VDZ35724.1|1795072_1795699_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	91.8	3.1e-90
VDZ35725.1|1795739_1796081_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	2.3e-55
VDZ35726.1|1796181_1796754_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
VDZ35727.1|1797086_1797530_-	exported protein	NA	NA	NA	NA	NA
VDZ35728.1|1797529_1797979_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VDZ35729.1|1797978_1798173_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VDZ35730.1|1798169_1798421_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VDZ35731.1|1798420_1798864_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VDZ35732.1|1799268_1801806_+	hyaluronate lyase	NA	NA	NA	NA	NA
VDZ35733.1|1801931_1802309_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VDZ35734.1|1802830_1805026_-	[Genomic island nu Sa beta2]	NA	A0A2H4PQT3	Staphylococcus_phage	97.6	0.0e+00
VDZ35735.1|1805164_1805401_-	[Genomic island nu Sa beta2]	NA	A0A2H4PQV1	Staphylococcus_phage	98.7	5.6e-37
VDZ35736.1|1805583_1806132_-	[Genomic island nu Sa beta2]	NA	A0A2H4PQV1	Staphylococcus_phage	94.4	3.3e-80
VDZ35737.1|1806157_1806499_-	[Genomic island nu Sa beta2]	NA	NA	NA	NA	NA
VDZ35738.1|1807700_1808279_-	type I restriction-modification enzyme, S subunit, EcoA family protein	NA	A0A2H4PQP5	Staphylococcus_phage	97.9	2.8e-106
VDZ35739.1|1808495_1808876_-	Probable specificity determinant HsdS	NA	A0A2H4PQP5	Staphylococcus_phage	96.8	1.2e-65
VDZ35740.1|1808892_1810449_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.7e-286
VDZ35741.1|1810811_1811531_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	94.1	9.9e-125
VDZ35742.1|1811752_1812415_-	serine proteinase	NA	A0A2H4PQN5	Staphylococcus_phage	60.9	2.9e-70
VDZ35743.1|1812539_1813259_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	91.6	5.1e-121
VDZ35744.1|1813316_1814039_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	95.4	1.4e-126
VDZ35745.1|1814163_1814715_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.1	4.3e-96
VDZ35746.1|1815822_1816401_+	Uncharacterised protein	NA	A0A2H4PQH6	Staphylococcus_phage	59.6	1.2e-48
VDZ35747.1|1816874_1817573_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	93.5	7.1e-112
VDZ35748.1|1817569_1818331_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	95.7	2.5e-126
VDZ35749.1|1818327_1819020_-	lantibiotic immunity protein F	NA	A0A2H4PQG7	Staphylococcus_phage	97.0	5.4e-120
VDZ35750.1|1819042_1820317_-|protease	epidermin leader peptide processing serine protease EpiP	protease	A0A2H4PQH1	Staphylococcus_phage	95.5	1.4e-230
VDZ35751.1|1820426_1820945_-	lantibiotic modifying enzyme	NA	A0A2H4PQG9	Staphylococcus_phage	97.7	1.9e-93
VDZ35752.1|1820960_1822205_-	Epidermin biosynthesis protein epiC	NA	A0A2H4PQH9	Staphylococcus_phage	87.2	9.5e-208
VDZ35753.1|1822197_1825191_-|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	92.2	0.0e+00
VDZ35754.1|1825255_1825399_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	100.0	3.8e-20
VDZ35755.1|1826132_1826276_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	78.7	2.0e-13
VDZ35756.1|1826515_1827334_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	98.2	2.5e-156
VDZ35757.1|1827380_1827500_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	100.0	5.0e-10
VDZ35758.1|1827501_1828437_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	99.3	2.5e-173
>prophage 10
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	1980111	1992927	2693779	integrase,terminase,transposase	Staphylococcus_phage(83.33%)	21	1974526:1974545	1990949:1990968
1974526:1974545	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
VDZ35922.1|1980111_1980291_-|terminase	terminase small subunit	terminase	A0A1W6JQF0	Staphylococcus_phage	94.9	4.0e-27
VDZ35923.1|1980396_1980681_-|terminase	terminase, superantigen-encoding pathogenicity islands SaPI	terminase	Q4ZE85	Staphylococcus_phage	98.9	2.6e-44
VDZ35924.1|1980677_1981019_-|transposase	transposase	transposase	Q4ZE86	Staphylococcus_phage	97.3	1.6e-56
VDZ35925.1|1981021_1981597_-	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	96.0	3.5e-88
VDZ35926.1|1981599_1981818_-	hypothetical mobile element-associated protein	NA	NA	NA	NA	NA
VDZ35927.1|1981835_1982414_-|transposase	transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	37.9	1.0e-26
VDZ35928.1|1982425_1982767_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
VDZ35929.1|1983283_1983925_-|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	93.0	2.1e-110
VDZ35930.1|1983921_1984302_-	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	97.6	4.5e-68
VDZ35931.1|1984716_1986318_-	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	95.8	9.7e-290
VDZ35932.1|1986331_1987201_-	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	95.2	1.7e-163
VDZ35933.1|1987267_1987585_-	mobile element-associated DUF1474-containing protein, putative	NA	A0A1W6JQH0	Staphylococcus_phage	53.4	7.1e-19
VDZ35934.1|1987585_1987945_-	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ35935.1|1987946_1988159_-	mobile element-associated protein	NA	A0A1W6JPA6	Staphylococcus_phage	72.1	2.4e-18
VDZ35936.1|1988151_1988298_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VDZ35937.1|1988294_1988612_-	mobile element-associated transcriptional regulator, putative	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
VDZ35938.1|1988615_1988822_-	SaPI1 Orf21	NA	Q4ZE78	Staphylococcus_phage	71.6	6.4e-21
VDZ35939.1|1988973_1989696_+	SaPI1 Orf22	NA	Q4ZE79	Staphylococcus_phage	38.2	3.3e-35
VDZ35940.1|1989709_1990882_+|integrase	mobile element-associated integrase, putative	integrase	A0A1W6JQD3	Staphylococcus_phage	96.2	1.7e-214
VDZ35941.1|1990950_1992567_-	heat shock protein 60 family chaperone GroEL	NA	A0A240F779	uncultured_virus	54.5	1.3e-156
1990949:1990968	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
VDZ35942.1|1992642_1992927_-	Heat shock protein 60 family co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 11
LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2693779	2412979	2446995	2693779	holin,transposase	Bacillus_phage(28.57%)	36	NA	NA
VDZ36383.1|2412979_2413675_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
VDZ36384.1|2413674_2414616_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
VDZ36385.1|2414632_2415268_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
VDZ36386.1|2415264_2416491_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	51.6	1.1e-19
VDZ36387.1|2417160_2417538_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
VDZ36388.1|2417594_2417759_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
VDZ36389.1|2417938_2419576_+	Amino acid permease	NA	NA	NA	NA	NA
VDZ36390.1|2419803_2421156_+	Carboxylesterase type B	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
VDZ36391.1|2421217_2422405_-	chloramphenicol resistance protein	NA	NA	NA	NA	NA
VDZ36392.1|2422800_2423577_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VDZ36393.1|2423569_2424232_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	W8CYL7	Bacillus_phage	33.9	4.8e-17
VDZ36394.1|2424577_2425654_-	endoglucanase M	NA	NA	NA	NA	NA
VDZ36395.1|2426009_2426276_-	addiction module toxin	NA	NA	NA	NA	NA
VDZ36396.1|2426275_2426533_-	prevent-host-death family protein	NA	NA	NA	NA	NA
VDZ36397.1|2426891_2427347_+	lipoprotein	NA	NA	NA	NA	NA
VDZ36398.1|2427514_2429092_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
VDZ36399.1|2429285_2430035_+	membrane protein	NA	NA	NA	NA	NA
VDZ36400.1|2430258_2431452_-	Antibiotic resistance protein	NA	NA	NA	NA	NA
VDZ36401.1|2431463_2432213_-	nickel transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
VDZ36402.1|2432205_2433021_-	Oligopeptide transporter putative ATPase domain protein	NA	G9BWD6	Planktothrix_phage	29.3	4.0e-13
VDZ36403.1|2433017_2433887_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VDZ36404.1|2433883_2434819_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VDZ36405.1|2434831_2435419_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
VDZ36406.1|2435510_2436428_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
VDZ36407.1|2436568_2436961_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ36408.1|2436924_2437869_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ36409.1|2437861_2438680_-	nicotianamine synthase	NA	NA	NA	NA	NA
VDZ36410.1|2438690_2439251_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
VDZ36411.1|2439223_2439511_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
VDZ36412.1|2440199_2440967_-	beta-lactamase	NA	NA	NA	NA	NA
VDZ36413.1|2441067_2441886_-	short chain dehydrogenase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	1.9e-10
VDZ36414.1|2442119_2443658_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
VDZ36415.1|2443769_2444192_-|transposase	transposase	transposase	NA	NA	NA	NA
VDZ36416.1|2444647_2445067_-	membrane protein	NA	NA	NA	NA	NA
VDZ36417.1|2445320_2446016_-	Short-chain alcohol dehydrogenase	NA	W8CYX9	Bacillus_phage	36.5	8.6e-09
VDZ36418.1|2446302_2446995_+|transposase	transposase (pseudogene)	transposase	NA	NA	NA	NA
