assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	1	623691-623777	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCATAAAAGCCTCTAATCGCTAAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|169aa|down_4|LR134088.1_627491_627998_+,NA|239aa|down_5|LR134088.1_628159_628876_+	NA|159aa|up_9|LR134088.1_614999_615476_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_8|LR134088.1_615515_616811_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_7|LR134088.1_616853_617360_+	pfam08741, YwhD, YwhD family	NA|337aa|up_6|LR134088.1_617858_618869_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_5|LR134088.1_619143_619560_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_4|LR134088.1_619556_621218_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|87aa|up_3|LR134088.1_621308_621569_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|173aa|up_2|LR134088.1_621614_622133_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|167aa|up_1|LR134088.1_622129_622630_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|212aa|up_0|LR134088.1_622927_623563_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|LR134088.1_623809_624697_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|333aa|down_1|LR134088.1_624799_625798_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|LR134088.1_625852_626572_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|LR134088.1_626555_627356_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|LR134088.1_627491_627998_+	NA	NA|239aa|down_5|LR134088.1_628159_628876_+	NA	NA|251aa|down_6|LR134088.1_629044_629797_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|LR134088.1_630084_630459_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|LR134088.1_631406_632336_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|LR134088.1_632530_632755_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	2	686320-686428	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAACAGCAAAAGATCCCCTAATTAATAAATTAAAAGGGG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|230aa|down_2|LR134088.1_688248_688938_-,NA|100aa|down_5|LR134088.1_690107_690407_+	NA|81aa|up_9|LR134088.1_675795_676038_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|267aa|up_8|LR134088.1_676141_676942_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|LR134088.1_677734_678532_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|179aa|up_6|LR134088.1_678999_679536_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_5|LR134088.1_680229_682380_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|142aa|up_4|LR134088.1_682459_682885_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|190aa|up_3|LR134088.1_683220_683790_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_2|LR134088.1_683789_684263_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|215aa|up_1|LR134088.1_684615_685260_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|LR134088.1_685375_686242_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|320aa|down_0|LR134088.1_686705_687665_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|LR134088.1_687661_688150_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|LR134088.1_688248_688938_-	NA	NA|148aa|down_3|LR134088.1_689064_689508_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_4|LR134088.1_689580_689970_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|100aa|down_5|LR134088.1_690107_690407_+	NA	NA|181aa|down_6|LR134088.1_690486_691029_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|LR134088.1_691124_691691_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|LR134088.1_691692_692151_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|226aa|down_9|LR134088.1_692159_692837_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	3	836962-837047	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATTTCGAAAAGAAATTCTACAAACAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_6|LR134088.1_831708_831822_+,NA	NA|107aa|up_9|LR134088.1_830286_830607_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_8|LR134088.1_830750_831107_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_7|LR134088.1_831264_831645_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_6|LR134088.1_831708_831822_+	NA	NA|311aa|up_5|LR134088.1_831823_832756_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|up_4|LR134088.1_833176_833566_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_3|LR134088.1_833558_833855_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_2|LR134088.1_834104_835130_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_1|LR134088.1_835122_835818_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_0|LR134088.1_835835_836657_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_0|LR134088.1_837306_837501_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|LR134088.1_837734_838586_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|LR134088.1_838913_839675_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|LR134088.1_839772_841080_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|253aa|down_4|LR134088.1_841194_841953_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|179aa|down_5|LR134088.1_841900_842437_+	cd06453, SufS_like, Cysteine desulfurase (SufS)-like	NA|155aa|down_6|LR134088.1_842426_842891_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|164aa|down_7|LR134088.1_843040_843532_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|258aa|down_8|LR134088.1_843663_844437_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|132aa|down_9|LR134088.1_844505_844901_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	4	908490-908634	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT	39	1	8	908597-908615|908597-908615|908597-908615|908597-908615|908597-908615|908597-908615|908597-908615|908597-908615	LR134088.1_1105973-1105955|LR134088.1_37823-37841|LR134088.1_786691-786709|LR134088.1_1005562-1005580|LR134088.1_1314946-1314964|LR134088.1_1569783-1569801|LR134088.1_1691183-1691165|LR134088.1_1908692-1908710	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|192aa|up_9|LR134088.1_894931_895507_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|LR134088.1_895511_896036_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|LR134088.1_896051_896627_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|LR134088.1_896786_900263_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|LR134088.1_900263_903917_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|LR134088.1_904082_904985_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|LR134088.1_905310_905700_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|LR134088.1_905870_907187_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|LR134088.1_907238_908063_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|LR134088.1_908176_908485_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|455aa|down_0|LR134088.1_909122_910487_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|145aa|down_1|LR134088.1_910501_910936_+	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases	NA|618aa|down_2|LR134088.1_911138_912992_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|238aa|down_3|LR134088.1_913033_913747_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_4|LR134088.1_913805_914675_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|172aa|down_5|LR134088.1_914805_915321_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_6|LR134088.1_915631_916066_+	pfam03642, MAP, MAP domain	NA|62aa|down_7|LR134088.1_916322_916508_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_8|LR134088.1_916802_917744_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_9|LR134088.1_917755_919000_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	5	1021680-1021768	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTGTAAGGTAAAAGAGGGATACTTACG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|43aa|down_0|LR134088.1_1021825_1021954_-,NA|54aa|down_1|LR134088.1_1022105_1022267_+,NA|383aa|down_2|LR134088.1_1022251_1023400_+,NA|193aa|down_4|LR134088.1_1025048_1025627_+	NA|103aa|up_9|LR134088.1_1013830_1014139_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|100aa|up_8|LR134088.1_1014252_1014552_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|103aa|up_7|LR134088.1_1014548_1014857_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|LR134088.1_1014859_1015426_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|LR134088.1_1015440_1016919_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|LR134088.1_1016940_1018188_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|179aa|up_3|LR134088.1_1018453_1018990_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|34aa|up_2|LR134088.1_1019251_1019353_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|390aa|up_1|LR134088.1_1019479_1020649_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|LR134088.1_1020663_1021239_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|43aa|down_0|LR134088.1_1021825_1021954_-	NA	NA|54aa|down_1|LR134088.1_1022105_1022267_+	NA	NA|383aa|down_2|LR134088.1_1022251_1023400_+	NA	NA|266aa|down_3|LR134088.1_1024197_1024995_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|193aa|down_4|LR134088.1_1025048_1025627_+	NA	NA|89aa|down_5|LR134088.1_1025743_1026010_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|LR134088.1_1026012_1027731_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|LR134088.1_1027965_1028199_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|LR134088.1_1028395_1029757_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|LR134088.1_1029753_1030773_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	6	1189989-1190074	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	7	1190019-1190044|1190019-1190044|1190019-1190044|1190019-1190044|1190019-1190044|1190019-1190044|1190019-1190044	LR134088.1_24181-24156|LR134088.1_748467-748492|LR134088.1_1240366-1240341|LR134088.1_2264674-2264699|LR134088.1_748411-748436|LR134088.1_786479-786454|LR134088.1_2071542-2071567	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|244aa|up_9|LR134088.1_1179774_1180506_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|452aa|up_8|LR134088.1_1180652_1182008_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|703aa|up_7|LR134088.1_1182109_1184218_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|up_6|LR134088.1_1184217_1185468_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_5|LR134088.1_1185454_1185787_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_4|LR134088.1_1185812_1187180_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|up_3|LR134088.1_1187521_1187797_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|LR134088.1_1187984_1188488_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_1|LR134088.1_1188487_1189225_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_0|LR134088.1_1189327_1189678_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_0|LR134088.1_1190147_1192754_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|295aa|down_1|LR134088.1_1193154_1194039_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|down_2|LR134088.1_1194022_1194790_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_3|LR134088.1_1194898_1196065_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_4|LR134088.1_1196086_1196995_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|291aa|down_5|LR134088.1_1197316_1198189_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|692aa|down_6|LR134088.1_1198362_1200438_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_7|LR134088.1_1200593_1201901_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|299aa|down_8|LR134088.1_1202319_1203216_+	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|182aa|down_9|LR134088.1_1203212_1203758_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	7	1873132-1873259	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_8|LR134088.1_1865413_1865809_-,NA|51aa|up_7|LR134088.1_1866294_1866447_-,NA	NA|462aa|up_9|LR134088.1_1863832_1865218_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_8|LR134088.1_1865413_1865809_-	NA	NA|51aa|up_7|LR134088.1_1866294_1866447_-	NA	NA|200aa|up_6|LR134088.1_1866471_1867071_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|169aa|up_5|LR134088.1_1867194_1867701_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|115aa|up_4|LR134088.1_1867705_1868050_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|267aa|up_3|LR134088.1_1868031_1868832_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|LR134088.1_1868982_1869711_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|LR134088.1_1869697_1871155_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|LR134088.1_1871413_1872475_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|116aa|down_0|LR134088.1_1881425_1881773_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|296aa|down_1|LR134088.1_1881931_1882819_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|LR134088.1_1882824_1883280_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|LR134088.1_1883360_1884650_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|156aa|down_4|LR134088.1_1884942_1885410_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|200aa|down_5|LR134088.1_1885438_1886038_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|160aa|down_6|LR134088.1_1886228_1886708_-	cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C	NA|146aa|down_7|LR134088.1_1886815_1887253_-	cd18554, ABC_6TM_Sav1866_like, Six-transmembrane helical domain of the bacterial ABC multidrug exporter Sav1866 and similar proteins	NA|162aa|down_8|LR134088.1_1887261_1887747_-	cd18554, ABC_6TM_Sav1866_like, Six-transmembrane helical domain of the bacterial ABC multidrug exporter Sav1866 and similar proteins	NA|59aa|down_9|LR134088.1_1887785_1887962_-	cd18554, ABC_6TM_Sav1866_like, Six-transmembrane helical domain of the bacterial ABC multidrug exporter Sav1866 and similar proteins
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	8	2116030-2116123	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CATCCAACTGTGTTCCTCTATCTTACA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_6|LR134088.1_2110864_2111095_-,NA|306aa|up_0|LR134088.1_2114882_2115800_+,NA	NA|148aa|up_9|LR134088.1_2107303_2107747_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_8|LR134088.1_2107946_2108360_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_7|LR134088.1_2108817_2110191_-	pfam01878, EVE, EVE domain	NA|77aa|up_6|LR134088.1_2110864_2111095_-	NA	NA|313aa|up_5|LR134088.1_2111125_2112064_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|178aa|up_4|LR134088.1_2112499_2113033_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|45aa|up_3|LR134088.1_2113029_2113164_-	pfam13460, NAD_binding_10, NAD(P)H-binding	csa3|107aa|up_2|LR134088.1_2113315_2113636_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LR134088.1_2113637_2114618_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|306aa|up_0|LR134088.1_2114882_2115800_+	NA	NA|286aa|down_0|LR134088.1_2116487_2117345_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_1|LR134088.1_2117412_2118195_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|564aa|down_2|LR134088.1_2118539_2120231_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_3|LR134088.1_2120910_2122449_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_4|LR134088.1_2122483_2124616_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_5|LR134088.1_2124627_2125062_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_6|LR134088.1_2125061_2126168_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|1955aa|down_7|LR134088.1_2126553_2132418_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|452aa|down_8|LR134088.1_2132695_2134051_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_9|LR134088.1_2134077_2135010_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_900635275.1_40757_D01	LR134088	Staphylococcus aureus strain NCTC5660 genome assembly, chromosome: 1	9	2365730-2365809	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAGCTTACAATAATGTGCAAGTTG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|61aa|down_1|LR134088.1_2366904_2367087_-	NA|151aa|up_9|LR134088.1_2352927_2353380_-	pfam01590, GAF, GAF domain	NA|226aa|up_8|LR134088.1_2353399_2354077_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|192aa|up_7|LR134088.1_2354069_2354645_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|520aa|up_6|LR134088.1_2354637_2356197_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1230aa|up_5|LR134088.1_2356186_2359876_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|326aa|up_4|LR134088.1_2360183_2361161_-	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase	NA|105aa|up_3|LR134088.1_2361151_2361466_-	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain	NA|802aa|up_2|LR134088.1_2361469_2363875_-	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|269aa|up_1|LR134088.1_2363902_2364709_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|179aa|up_0|LR134088.1_2364897_2365434_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|275aa|down_0|LR134088.1_2365877_2366702_-	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism]	NA|61aa|down_1|LR134088.1_2366904_2367087_-	NA	NA|156aa|down_2|LR134088.1_2367173_2367641_-	COG3832, COG3832, Uncharacterized conserved protein [Function unknown]	NA|516aa|down_3|LR134088.1_2367826_2369374_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|89aa|down_4|LR134088.1_2369667_2369934_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|84aa|down_5|LR134088.1_2369933_2370185_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|200aa|down_6|LR134088.1_2370455_2371055_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|down_7|LR134088.1_2371073_2371436_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|137aa|down_8|LR134088.1_2371690_2372101_+	pfam02388, FemAB, FemAB family	NA|284aa|down_9|LR134088.1_2372088_2372940_+	pfam02388, FemAB, FemAB family
