assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635285.1_40677_B02	LR134087	Staphylococcus aureus strain NCTC7121 genome assembly, chromosome: 1	1	214941-215022	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	3	214965-214998|214965-214998|214965-214998	LR134087.1_1479910-1479877|LR134087.1_1259438-1259471|LR134087.1_1392379-1392412	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|68aa|down_0|LR134087.1_215085_215289_-	NA|89aa|up_9|LR134087.1_205305_205572_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|310aa|up_8|LR134087.1_205568_206498_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|LR134087.1_206508_207066_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|LR134087.1_207065_207953_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|LR134087.1_208006_209269_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|LR134087.1_209345_210491_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|LR134087.1_210555_210882_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|LR134087.1_210888_211272_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|LR134087.1_211698_213186_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|LR134087.1_213832_214792_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|LR134087.1_215085_215289_-	NA	NA|171aa|down_1|LR134087.1_215467_215980_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|LR134087.1_216321_217062_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|LR134087.1_217075_218050_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|LR134087.1_218046_218808_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_5|LR134087.1_218817_219852_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|LR134087.1_220068_220428_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|LR134087.1_220600_221626_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|LR134087.1_222011_223262_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|LR134087.1_223708_230884_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_900635285.1_40677_B02	LR134087	Staphylococcus aureus strain NCTC7121 genome assembly, chromosome: 1	3	818013-818095	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|94aa|up_1|LR134087.1_816900_817182_-,NA	NA|237aa|up_9|LR134087.1_804964_805675_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_8|LR134087.1_805658_806663_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_7|LR134087.1_807136_809077_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_6|LR134087.1_809352_811230_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|593aa|up_5|LR134087.1_811244_813023_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_4|LR134087.1_813244_814222_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_3|LR134087.1_814214_815729_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_2|LR134087.1_815968_817027_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|94aa|up_1|LR134087.1_816900_817182_-	NA	NA|181aa|up_0|LR134087.1_817321_817864_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|LR134087.1_818543_819461_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|down_1|LR134087.1_819729_821235_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_2|LR134087.1_821575_822076_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_3|LR134087.1_822095_822962_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_4|LR134087.1_823762_824161_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_5|LR134087.1_824123_826229_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_6|LR134087.1_826346_827318_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|338aa|down_7|LR134087.1_827983_828997_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_8|LR134087.1_828983_829940_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_9|LR134087.1_829936_830698_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_900635285.1_40677_B02	LR134087	Staphylococcus aureus strain NCTC7121 genome assembly, chromosome: 1	4	907652-907733	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	907676-907709|907676-907709	LR134087.1_1479877-1479910|LR134087.1_1259471-1259438	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|38aa|up_1|LR134087.1_906554_906668_+,NA	NA|206aa|up_9|LR134087.1_901409_902027_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|LR134087.1_902181_902676_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|LR134087.1_903074_903497_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|LR134087.1_903644_904361_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|LR134087.1_904443_904983_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|LR134087.1_905132_905453_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|LR134087.1_905596_905953_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|LR134087.1_906110_906491_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|LR134087.1_906554_906668_+	NA	NA|293aa|up_0|LR134087.1_906669_907548_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|LR134087.1_908453_908843_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|LR134087.1_908835_909132_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|LR134087.1_909381_910407_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|LR134087.1_910399_911095_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|LR134087.1_911112_911934_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|LR134087.1_912287_912482_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|LR134087.1_912715_913567_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|LR134087.1_913894_914656_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|LR134087.1_914754_916062_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|LR134087.1_916176_917418_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_900635285.1_40677_B02	LR134087	Staphylococcus aureus strain NCTC7121 genome assembly, chromosome: 1	5	1953694-1953836	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA	55	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|132aa|up_8|LR134087.1_1945883_1946279_-,NA|98aa|up_7|LR134087.1_1946397_1946691_+,NA|51aa|up_6|LR134087.1_1946822_1946975_-,NA	NA|462aa|up_9|LR134087.1_1944302_1945688_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_8|LR134087.1_1945883_1946279_-	NA	NA|98aa|up_7|LR134087.1_1946397_1946691_+	NA	NA|51aa|up_6|LR134087.1_1946822_1946975_-	NA	NA|200aa|up_5|LR134087.1_1946999_1947599_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|LR134087.1_1947757_1948228_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_3|LR134087.1_1948232_1949360_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|LR134087.1_1949511_1950240_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|LR134087.1_1950226_1951684_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|LR134087.1_1951941_1953003_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|LR134087.1_1961781_1962228_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|320aa|down_1|LR134087.1_1962324_1963284_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|LR134087.1_1963280_1963736_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|LR134087.1_1963816_1965106_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|382aa|down_4|LR134087.1_1965347_1966493_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|LR134087.1_1966683_1968420_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|LR134087.1_1968710_1969253_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|221aa|down_7|LR134087.1_1969554_1970217_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|103aa|down_8|LR134087.1_1970282_1970591_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|LR134087.1_1970742_1971720_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCA_900635285.1_40677_B02	LR134087	Staphylococcus aureus strain NCTC7121 genome assembly, chromosome: 1	6	2239676-2239832	1	PILER-CR	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	41	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|LR134087.1_2234551_2234782_-,NA|364aa|up_0|LR134087.1_2238571_2239663_+,NA|32aa|down_1|LR134087.1_2243194_2243290_+	NA|237aa|up_9|LR134087.1_2230160_2230871_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LR134087.1_2230991_2231435_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LR134087.1_2231634_2232048_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LR134087.1_2232504_2233878_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LR134087.1_2234551_2234782_-	NA	NA|313aa|up_4|LR134087.1_2234812_2235751_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LR134087.1_2236186_2236852_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LR134087.1_2237003_2237324_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LR134087.1_2237325_2238306_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LR134087.1_2238571_2239663_+	NA	NA|379aa|down_0|LR134087.1_2241370_2242507_-	pfam02037, SAP, SAP domain	NA|32aa|down_1|LR134087.1_2243194_2243290_+	NA	NA|286aa|down_2|LR134087.1_2243515_2244373_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|LR134087.1_2244440_2245223_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|LR134087.1_2245454_2247260_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|LR134087.1_2247940_2249479_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|LR134087.1_2249513_2251646_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|LR134087.1_2251657_2252092_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|LR134087.1_2252091_2253198_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2474aa|down_9|LR134087.1_2253516_2260938_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
