The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134089	Staphylococcus saprophyticus subsp. saprophyticus strain NCTC7666 genome assembly, chromosome: 1	2610800	1036534	1070826	2610800	tRNA	Staphylococcus_phage(96.15%)	35	NA	NA
VDZ22325.1|1036534_1038070_+	O-succinylbenzoic acid-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	61.1	8.5e-166
VDZ22326.1|1038089_1039094_+	O-succinylbenzoic acid synthetase	NA	A0A2H4PQM0	Staphylococcus_phage	49.7	1.7e-90
VDZ22327.1|1039083_1039335_-	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	81.1	4.2e-30
VDZ22328.1|1039394_1039871_+	low G+C gram positive nudix hydrolase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.5	2.8e-43
VDZ22329.1|1039854_1040646_+	peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.4	1.6e-99
VDZ22330.1|1040741_1042331_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	81.6	4.2e-261
VDZ22331.1|1042719_1043916_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	86.1	7.5e-194
VDZ22332.1|1044014_1044923_+	Predicted HD superfamily hydrolase	NA	A0A2H4PQQ8	Staphylococcus_phage	75.8	4.3e-101
VDZ22333.1|1045131_1045968_+	aldo keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.2	2.5e-111
VDZ22334.1|1046237_1046594_-	CrcB-like protein	NA	NA	NA	NA	NA
VDZ22335.1|1046590_1046956_-	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.8	3.3e-36
VDZ22336.1|1047166_1047472_-	membrane protein	NA	NA	NA	NA	NA
VDZ22337.1|1047756_1048470_+	Transaldolase	NA	E3SKN5	Synechococcus_phage	35.8	5.0e-20
VDZ22338.1|1048985_1049486_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ22339.1|1049585_1050035_+	membrane protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	1.3e-21
VDZ22340.1|1050042_1050468_-	comK family protein	NA	NA	NA	NA	NA
VDZ22341.1|1050481_1050952_-	DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	44.4	1.3e-24
VDZ22342.1|1051172_1051397_+	putative staphylococcal protein	NA	NA	NA	NA	NA
VDZ22343.1|1051564_1052416_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A0E3T9J6	Staphylococcus_phage	43.3	1.7e-38
VDZ22344.1|1052638_1053565_-	glycine/betaine ABC transporter	NA	NA	NA	NA	NA
VDZ22345.1|1053739_1055206_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	58.6	5.5e-13
VDZ22346.1|1055746_1056790_+	riboflavin specific deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	2.3e-130
VDZ22347.1|1056796_1057429_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	64.8	5.0e-72
VDZ22348.1|1057440_1058622_+	riboflavin biosynthesis protein	NA	A0A2H4PQS2	Staphylococcus_phage	71.0	1.0e-163
VDZ22349.1|1058635_1059094_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.7	1.5e-57
VDZ22350.1|1059358_1060360_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	68.5	4.3e-126
VDZ22351.1|1060593_1061451_+	lysophospholipase	NA	NA	NA	NA	NA
VDZ22352.1|1061686_1062643_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
VDZ22353.1|1062793_1063195_+	repressor of toxins	NA	NA	NA	NA	NA
VDZ22354.1|1063314_1063875_-	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	63.8	9.5e-67
VDZ22355.1|1063871_1064825_-	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	84.0	1.9e-67
VDZ22356.1|1064934_1066104_+	major facilitator superfamily permease	NA	A0A2H4PQR6	Staphylococcus_phage	77.2	2.2e-166
VDZ22357.1|1066632_1069047_+|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.3	0.0e+00
VDZ22358.1|1069065_1069377_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	4.5e-34
VDZ22359.1|1069572_1070826_-	flavoprotein	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	1.9e-38
>prophage 2
LR134089	Staphylococcus saprophyticus subsp. saprophyticus strain NCTC7666 genome assembly, chromosome: 1	2610800	1192602	1201726	2610800	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
VDZ22468.1|1192602_1193607_+	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	1.7e-05
VDZ22469.1|1193609_1194635_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VDZ22470.1|1194655_1195801_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.5	2.1e-84
VDZ22471.1|1195816_1196077_+	preprotein translocase subunit	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	7.4e-06
VDZ22472.1|1196457_1198734_+	bifunctional preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.2	1.0e-29
VDZ22473.1|1198915_1201195_+	single-strand DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	29.4	4.9e-69
VDZ22474.1|1201207_1201726_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.2	6.6e-30
>prophage 3
LR134089	Staphylococcus saprophyticus subsp. saprophyticus strain NCTC7666 genome assembly, chromosome: 1	2610800	1328030	1337993	2610800		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
VDZ22756.1|1328030_1328918_+	site-specific recombinase	NA	A0A0K2CP59	Brevibacillus_phage	31.4	5.1e-38
VDZ22759.1|1328986_1329493_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VDZ22761.1|1329584_1330319_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.6	1.8e-09
VDZ22763.1|1330302_1330851_+	transcriptional regulator	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.4	2.1e-10
VDZ22765.1|1330843_1331581_+	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
VDZ22767.1|1331707_1332433_+	respiratory response protein SrrA	NA	W8CYM9	Bacillus_phage	42.6	1.1e-46
VDZ22769.1|1332416_1334180_+	respiratory response protein SrrB	NA	A0A1V0SGX0	Hokovirus	24.0	7.8e-22
VDZ22773.1|1334602_1335148_+	riboflavin transporter	NA	NA	NA	NA	NA
VDZ22775.1|1335303_1335552_-	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	4.9e-15
VDZ22776.1|1335661_1336621_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ22778.1|1336613_1337993_+	ATP-dependent DNA helicase	NA	M1PGQ0	Moumouvirus	32.7	2.4e-55
>prophage 5
LR134089	Staphylococcus saprophyticus subsp. saprophyticus strain NCTC7666 genome assembly, chromosome: 1	2610800	1776935	1785410	2610800		Synechococcus_phage(16.67%)	9	NA	NA
VDZ23629.1|1776935_1777502_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.6	2.2e-26
VDZ23631.1|1777504_1778533_-	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	44.5	9.3e-68
VDZ23635.1|1778525_1780013_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.2	3.8e-46
VDZ23637.1|1779991_1782181_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.4	1.2e-136
VDZ23639.1|1782173_1782845_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
VDZ23641.1|1782844_1783105_-	phosphoribosylformylglycinamidine synthase PurS component	NA	NA	NA	NA	NA
VDZ23643.1|1783107_1783809_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	42.5	6.8e-46
VDZ23645.1|1783813_1784941_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
VDZ23647.1|1784927_1785410_-	phosphoribosylcarboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	2.6e-20
>prophage 6
LR134089	Staphylococcus saprophyticus subsp. saprophyticus strain NCTC7666 genome assembly, chromosome: 1	2610800	1967663	1974490	2610800	transposase	uncultured_Caudovirales_phage(33.33%)	9	NA	NA
VDZ24398.1|1967663_1968083_-	alcohol dehydrogenase	NA	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	33.3	4.5e-05
VDZ24400.1|1968083_1968377_-	YolD-like protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	81.0	2.9e-14
VDZ24406.1|1968386_1968578_-	Uncharacterised protein	NA	U3PCX8	Staphylococcus_phage	100.0	2.9e-31
VDZ24416.1|1968697_1968904_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ24423.1|1968995_1969520_-	membrane protein	NA	NA	NA	NA	NA
VDZ24431.1|1970013_1970415_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ24439.1|1970390_1970783_-|transposase	transposase	transposase	A0A2H4JB14	uncultured_Caudovirales_phage	42.9	1.7e-14
VDZ24446.1|1971612_1972077_-	tmRNA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	92.9	1.2e-75
VDZ24454.1|1972099_1974490_-	exoribonuclease	NA	Q0GXV6	Lactococcus_phage	38.4	2.4e-90
>prophage 7
LR134089	Staphylococcus saprophyticus subsp. saprophyticus strain NCTC7666 genome assembly, chromosome: 1	2610800	1987312	1994483	2610800	protease	Streptococcus_phage(33.33%)	7	NA	NA
VDZ24534.1|1987312_1987897_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.8	3.7e-53
VDZ24537.1|1988601_1989099_+	surface lipoprotein-related protein	NA	A0A1P8D5Q9	Corynebacterium_phage	57.8	4.9e-06
VDZ24546.1|1989214_1990060_-	membrane protein	NA	NA	NA	NA	NA
VDZ24553.1|1990298_1991243_-	sporulation Regulator WhiA C terminal domain protein	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
VDZ24562.1|1991281_1992280_-	2-phospho-L-lactate transferase-like protein	NA	A1IMD5	Streptococcus_phage	40.8	1.0e-47
VDZ24567.1|1992266_1993193_-	glmZ(sRNA)-inactivating NTPase	NA	A0A0R8VB27	Thermobifida_phage	37.0	1.4e-09
VDZ24573.1|1993538_1994483_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	49.5	9.4e-83
>prophage 8
LR134089	Staphylococcus saprophyticus subsp. saprophyticus strain NCTC7666 genome assembly, chromosome: 1	2610800	2029053	2047782	2610800		uncultured_Caudovirales_phage(33.33%)	14	NA	NA
VDZ24679.1|2029053_2030022_-	cobalamin Fe3+-siderophores ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	1.5e-136
VDZ24683.1|2030435_2031404_-	ribonucleotide reductase of class Ib (aerobic), beta subunit	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	94.1	2.2e-175
VDZ24691.1|2031525_2033631_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.2	0.0e+00
VDZ24694.1|2033593_2033992_-	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	75.8	2.5e-53
VDZ24697.1|2034718_2035606_+	permease	NA	NA	NA	NA	NA
VDZ24700.1|2035619_2036120_+	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	72.3	2.0e-52
VDZ24705.1|2036302_2037817_+	di-tripeptide permease	NA	A0A0P0IY73	Acinetobacter_phage	35.8	9.5e-69
VDZ24708.1|2038186_2039692_+	di-tripepride permease	NA	A0A0P0IY73	Acinetobacter_phage	32.2	1.1e-64
VDZ24711.1|2040149_2041109_+	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	24.4	2.2e-10
VDZ24714.1|2041278_2041827_-	5'-3'-deoxyribonucleotidase, putative	NA	A0A0A0PKY7	Bacillus_phage	39.0	2.0e-29
VDZ24717.1|2042004_2043060_-	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	27.2	2.3e-21
VDZ24720.1|2043218_2044736_-	glycine/betaine ABC transporter periplasmic protein	NA	NA	NA	NA	NA
VDZ24725.1|2044732_2045695_-	glycine/betaine ABC transporter ATPase	NA	G3M9Y6	Bacillus_virus	32.5	4.8e-26
VDZ24728.1|2046003_2047782_-	ATP-dependent DNA helicase	NA	M1PGQ0	Moumouvirus	36.8	5.9e-78
>prophage 9
LR134089	Staphylococcus saprophyticus subsp. saprophyticus strain NCTC7666 genome assembly, chromosome: 1	2610800	2056083	2063632	2610800		Pandoravirus(16.67%)	9	NA	NA
VDZ24752.1|2056083_2057226_-	para-aminobenzoate synthase component	NA	S4VNU7	Pandoravirus	36.7	5.4e-24
VDZ24755.1|2057209_2057803_-	glutamine amidotransferase class-I protein	NA	A0A0P0IKJ1	Acinetobacter_phage	40.9	3.2e-36
VDZ24758.1|2058058_2058730_+	putative ExsB family protein	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	1.2e-63
VDZ24761.1|2058731_2059157_+	6-pyruvoyl tetrahydrobiopterin synthase	NA	NA	NA	NA	NA
VDZ24766.1|2059149_2059866_+	radical activating enzyme	NA	A0A1U9WRB6	Streptococcus_virus	43.4	2.5e-51
VDZ24769.1|2060106_2060700_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ24773.1|2060768_2061020_+	transglycosylase associated family protein	NA	NA	NA	NA	NA
VDZ24776.1|2061237_2062299_-	glucosyl transferase	NA	A0A192Y8W7	Salmonella_phage	42.3	1.1e-60
VDZ24779.1|2062792_2063632_-	aldo keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.5	4.9e-51
