assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	1	141023-141104	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	3	141047-141080|141047-141080|141047-141080	LR134091.1_1411405-1411372|LR134091.1_1190985-1191018|LR134091.1_1323872-1323905	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|402aa|up_9|LR134091.1_130168_131374_+,NA|68aa|down_0|LR134091.1_141167_141371_-	NA|402aa|up_9|LR134091.1_130168_131374_+	NA	NA|402aa|up_8|LR134091.1_131374_132580_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|LR134091.1_132590_133148_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|LR134091.1_133147_134035_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|LR134091.1_134088_135351_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|LR134091.1_135427_136573_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|LR134091.1_136637_136964_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|LR134091.1_136970_137354_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|LR134091.1_137780_139268_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|LR134091.1_139914_140874_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|LR134091.1_141167_141371_-	NA	NA|171aa|down_1|LR134091.1_141549_142062_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|LR134091.1_142403_143144_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|LR134091.1_143157_144132_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|LR134091.1_144128_144890_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_5|LR134091.1_144899_145934_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|LR134091.1_146150_146510_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|LR134091.1_146682_147708_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|LR134091.1_148093_149344_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|LR134091.1_149790_156966_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	2	264191-264331	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	53	1	9	264244-264278|264244-264278|264244-264278|264244-264278|264244-264278|264244-264278|264244-264278|264244-264278|264244-264278	LR134091.1_839688-839654|LR134091.1_839744-839710|LR134091.1_839800-839766|LR134091.1_2271436-2271402|LR134091.1_2436123-2436089|LR134091.1_2708595-2708561|LR134091.1_759166-759200|LR134091.1_1103034-1103068|LR134091.1_2305670-2305704	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|563aa|up_9|LR134091.1_252657_254346_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|up_8|LR134091.1_254378_256100_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_7|LR134091.1_256243_256918_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|up_6|LR134091.1_257162_258917_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_5|LR134091.1_258919_259660_+	PRK14084, PRK14084, DNA-binding response regulator	NA|146aa|up_4|LR134091.1_259778_260216_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_3|LR134091.1_260208_260910_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|235aa|up_2|LR134091.1_261017_261722_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|LR134091.1_261870_262662_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|LR134091.1_262677_264114_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|LR134091.1_264581_265343_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|LR134091.1_265593_266508_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|LR134091.1_266535_266940_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|LR134091.1_266954_267836_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|LR134091.1_268067_269066_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|459aa|down_5|LR134091.1_269549_270926_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_6|LR134091.1_271159_272152_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_7|LR134091.1_272477_273428_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|220aa|down_8|LR134091.1_273479_274139_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|307aa|down_9|LR134091.1_274152_275073_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	3	749615-749697	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|94aa|up_1|LR134091.1_748502_748784_-,NA	NA|237aa|up_9|LR134091.1_736566_737277_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_8|LR134091.1_737260_738265_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_7|LR134091.1_738738_740679_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_6|LR134091.1_740954_742832_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|593aa|up_5|LR134091.1_742846_744625_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_4|LR134091.1_744846_745824_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_3|LR134091.1_745816_747331_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_2|LR134091.1_747570_748629_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|94aa|up_1|LR134091.1_748502_748784_-	NA	NA|181aa|up_0|LR134091.1_748923_749466_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|LR134091.1_750145_751063_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|down_1|LR134091.1_751331_752837_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_2|LR134091.1_753177_753678_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_3|LR134091.1_753697_754564_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_4|LR134091.1_755365_755764_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_5|LR134091.1_755726_757832_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_6|LR134091.1_757949_758921_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|298aa|down_7|LR134091.1_759586_760480_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_8|LR134091.1_760585_761542_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_9|LR134091.1_761538_762300_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	4	796132-796214	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCATTGTCTGTAGAAATT	25	1	1	796157-796189	LR134091.1_1921082-1921114	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|LR134091.1_783370_784210_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|LR134091.1_784383_785034_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|LR134091.1_785030_785267_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|LR134091.1_785535_787521_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|LR134091.1_787528_790375_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|LR134091.1_790994_791927_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|LR134091.1_791932_792772_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|LR134091.1_792779_793265_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|LR134091.1_793272_794712_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|LR134091.1_794778_795714_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|LR134091.1_796479_797391_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|LR134091.1_797387_798383_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|LR134091.1_798493_799438_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|LR134091.1_800010_800598_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|290aa|down_4|LR134091.1_800840_801710_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|LR134091.1_802445_803075_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|LR134091.1_803778_804792_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|LR134091.1_804844_805855_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|LR134091.1_805993_807184_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|LR134091.1_807305_808067_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	5	839272-839353	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	839296-839329|839296-839329	LR134091.1_1411372-1411405|LR134091.1_1191018-1190985	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|LR134091.1_838174_838288_+,NA	NA|206aa|up_9|LR134091.1_833029_833647_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|LR134091.1_833801_834296_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|LR134091.1_834694_835117_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|LR134091.1_835264_835981_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|LR134091.1_836063_836603_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|LR134091.1_836752_837073_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|LR134091.1_837216_837573_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|LR134091.1_837730_838111_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|LR134091.1_838174_838288_+	NA	NA|293aa|up_0|LR134091.1_838289_839168_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|LR134091.1_840129_840519_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|LR134091.1_840511_840808_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|LR134091.1_841057_842083_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|LR134091.1_842075_842771_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|LR134091.1_842788_843610_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|LR134091.1_843963_844158_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|LR134091.1_844391_845243_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|LR134091.1_845570_846332_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|LR134091.1_846430_847738_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|LR134091.1_847852_849094_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	6	1106921-1107107	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	40	1106940-1106976|1106940-1106976|1106940-1106976|1106940-1106976|1106940-1106976|1106940-1106976|1106940-1106976|1106940-1106976|1106940-1106976|1106940-1106976|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1106996-1107032|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088|1107052-1107088	LR134091.1_2271386-2271350|LR134091.1_2461416-2461452|LR134091.1_141007-141043|LR134091.1_790735-790699|LR134091.1_839369-839333|LR134091.1_888534-888570|LR134091.1_1102972-1103008|LR134091.1_1592691-1592655|LR134091.1_1930445-1930409|LR134091.1_2594022-2594058|LR134091.1_340528-340564|LR134091.1_803381-803345|LR134091.1_1004598-1004562|LR134091.1_1323831-1323867|LR134091.1_1592749-1592713|LR134091.1_1919752-1919716|LR134091.1_2305664-2305700|LR134091.1_1411446-1411410|LR134091.1_2271442-2271406|LR134091.1_2543733-2543697|LR134091.1_839638-839602|LR134091.1_839694-839658|LR134091.1_839750-839714|LR134091.1_839806-839770|LR134091.1_1107108-1107144|LR134091.1_1191058-1191094|LR134091.1_2436129-2436093|LR134091.1_749603-749639|LR134091.1_1323889-1323925|LR134091.1_1411388-1411352|LR134091.1_1454669-1454705|LR134091.1_1454725-1454761|LR134091.1_1921153-1921117|LR134091.1_2305720-2305756|LR134091.1_2708713-2708677|LR134091.1_796228-796192|LR134091.1_1191002-1191038|LR134091.1_2543677-2543641|LR134091.1_2708657-2708621|LR134091.1_1713056-1713092	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_7|LR134091.1_1100873_1101380_+,NA|62aa|up_4|LR134091.1_1103288_1103474_-,NA|78aa|up_3|LR134091.1_1104095_1104329_-,NA|49aa|up_1|LR134091.1_1106437_1106584_+,NA|66aa|up_0|LR134091.1_1106567_1106765_+,NA|76aa|down_7|LR134091.1_1114120_1114348_+	NA|110aa|up_9|LR134091.1_1099102_1099432_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|LR134091.1_1099801_1100203_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|LR134091.1_1100873_1101380_+	NA	NA|166aa|up_6|LR134091.1_1101638_1102136_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|LR134091.1_1102286_1102637_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|LR134091.1_1103288_1103474_-	NA	NA|78aa|up_3|LR134091.1_1104095_1104329_-	NA	NA|320aa|up_2|LR134091.1_1104805_1105765_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|LR134091.1_1106437_1106584_+	NA	NA|66aa|up_0|LR134091.1_1106567_1106765_+	NA	NA|131aa|down_0|LR134091.1_1107321_1107714_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|101aa|down_1|LR134091.1_1107735_1108038_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_2|LR134091.1_1108145_1108871_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_3|LR134091.1_1108965_1109691_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_4|LR134091.1_1110128_1111130_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|312aa|down_5|LR134091.1_1111149_1112085_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_6|LR134091.1_1112256_1113813_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_7|LR134091.1_1114120_1114348_+	NA	NA|316aa|down_8|LR134091.1_1114652_1115600_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_9|LR134091.1_1115848_1116037_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	7	1713084-1713170	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|454aa|up_9|LR134091.1_1698272_1699634_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_8|LR134091.1_1699666_1700473_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|276aa|up_7|LR134091.1_1700490_1701318_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|586aa|up_6|LR134091.1_1701958_1703716_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|LR134091.1_1703737_1704706_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|LR134091.1_1704974_1705919_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|LR134091.1_1705918_1706776_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|LR134091.1_1706970_1708200_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|LR134091.1_1708649_1711847_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|LR134091.1_1711867_1712809_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|LR134091.1_1713260_1714559_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|LR134091.1_1714763_1715177_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|LR134091.1_1715481_1716171_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|LR134091.1_1716345_1717401_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|LR134091.1_1717716_1718835_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|LR134091.1_1718975_1719476_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|LR134091.1_1719721_1720924_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|LR134091.1_1721011_1721959_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|LR134091.1_1722081_1722576_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|LR134091.1_1722673_1723444_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	8	2156206-2156301	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTTATGCAG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|LR134091.1_2151077_2151308_-,NA|364aa|up_0|LR134091.1_2155097_2156189_+,NA|32aa|down_1|LR134091.1_2159663_2159759_+	NA|237aa|up_9|LR134091.1_2146686_2147397_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|LR134091.1_2147517_2147961_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|LR134091.1_2148160_2148574_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|LR134091.1_2149030_2150404_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|LR134091.1_2151077_2151308_-	NA	NA|313aa|up_4|LR134091.1_2151338_2152277_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|LR134091.1_2152712_2153378_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|LR134091.1_2153529_2153850_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|LR134091.1_2153851_2154832_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|LR134091.1_2155097_2156189_+	NA	NA|379aa|down_0|LR134091.1_2157839_2158976_-	pfam02037, SAP, SAP domain	NA|32aa|down_1|LR134091.1_2159663_2159759_+	NA	NA|286aa|down_2|LR134091.1_2159984_2160842_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|LR134091.1_2160909_2161692_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|LR134091.1_2161923_2163729_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|LR134091.1_2164409_2165948_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|LR134091.1_2165982_2168115_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|LR134091.1_2168126_2168561_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|LR134091.1_2168560_2169667_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2474aa|down_9|LR134091.1_2169985_2177407_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_900635305.1_40961_G01	LR134091	Staphylococcus aureus strain NCTC4137 genome assembly, chromosome: 1	9	2594038-2594119	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	3	2594062-2594095|2594062-2594095|2594062-2594095	LR134091.1_1411405-1411372|LR134091.1_1190985-1191018|LR134091.1_1323872-1323905	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|166aa|up_8|LR134091.1_2584450_2584948_-,NA|107aa|up_1|LR134091.1_2593049_2593370_+,NA	NA|498aa|up_9|LR134091.1_2582964_2584458_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|166aa|up_8|LR134091.1_2584450_2584948_-	NA	NA|256aa|up_7|LR134091.1_2585113_2585881_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|up_6|LR134091.1_2586241_2588053_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|163aa|up_5|LR134091.1_2588564_2589053_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|234aa|up_4|LR134091.1_2589328_2590030_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|up_3|LR134091.1_2590637_2591693_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|196aa|up_2|LR134091.1_2592084_2592672_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|107aa|up_1|LR134091.1_2593049_2593370_+	NA	NA|77aa|up_0|LR134091.1_2593589_2593820_+	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|126aa|down_0|LR134091.1_2594223_2594601_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|274aa|down_1|LR134091.1_2594617_2595439_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|100aa|down_2|LR134091.1_2595458_2595758_-	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|186aa|down_3|LR134091.1_2595889_2596447_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_4|LR134091.1_2596439_2597144_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|337aa|down_5|LR134091.1_2597230_2598241_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|204aa|down_6|LR134091.1_2598260_2598872_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|297aa|down_7|LR134091.1_2599237_2600128_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|449aa|down_8|LR134091.1_2600224_2601571_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|369aa|down_9|LR134091.1_2601558_2602665_-	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase
