The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	317349	360129	2843795	protease,holin,integrase,tail,terminase,portal,head,capsid	Staphylococcus_phage(68.18%)	69	317238:317256	362299:362317
317238:317256	attL	AATCATACAAGGATGGGAT	NA	NA	NA	NA
VDZ24386.1|317349_318555_-|integrase	phage integrase family protein	integrase	A0A1X9H094	Staphylococcus_phage	97.3	6.3e-217
VDZ24388.1|318682_319297_+	phi PVL ORF 30-like protein	NA	A7TW88	Staphylococcus_phage	99.0	6.7e-106
VDZ24390.1|319293_319419_-	ORF136	NA	A0A2I6PF02	Staphylococcus_phage	100.0	5.1e-13
VDZ24393.1|319497_319683_-	phage protein	NA	A0A2I6PDS4	Staphylococcus_phage	95.1	2.5e-24
VDZ24395.1|319679_319826_-	phage protein	NA	U5U441	Staphylococcus_phage	100.0	4.3e-19
VDZ24403.1|319837_320554_-	repressor-like protein	NA	Q9G039	Staphylococcus_virus	98.7	1.0e-129
VDZ24405.1|320717_320960_+	phage DNA-binding protein	NA	Q9G038	Staphylococcus_virus	100.0	2.8e-39
VDZ24408.1|320975_321773_+	prophage L54a, antirepressor	NA	Q9MBT0	Staphylococcus_prophage	99.2	3.3e-145
VDZ24410.1|321788_321965_+	Uncharacterised protein	NA	B7T0F9	Staphylococcus_virus	100.0	8.8e-27
VDZ24412.1|321961_322192_-	phiSLT ORF78-like protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
VDZ24414.1|322246_322534_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ24417.1|322481_322724_-	Uncharacterised protein	NA	Q4ZCA7	Staphylococcus_virus	50.0	3.6e-15
VDZ24419.1|322784_323537_+	antirepressor	NA	S4SW96	Staphylococcus_phage	98.8	1.1e-137
VDZ24421.1|323552_323750_+	phage protein	NA	A7TWF5	Staphylococcus_phage	93.8	3.3e-22
VDZ24424.1|323736_324117_-	phage protein	NA	Q4ZCQ5	Staphylococcus_virus	99.2	3.8e-67
VDZ24426.1|324469_324733_+	DNA-binding protein	NA	B7T0G2	Staphylococcus_virus	96.6	4.1e-44
VDZ24428.1|324745_324913_+	phage protein	NA	Q9MBS6	Staphylococcus_prophage	98.2	2.3e-21
VDZ24430.1|324913_325234_+	Uncharacterised protein	NA	Q9MBS5	Staphylococcus_prophage	100.0	1.6e-55
VDZ24433.1|325325_325586_+	phage protein	NA	Q9MBS4	Staphylococcus_prophage	100.0	1.5e-43
VDZ24435.1|325595_325817_+	phage protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
VDZ24437.1|325809_326433_+	putative phage topoisomerase	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
VDZ24440.1|326432_326852_+	prophage L54a, single-stranded DNA binding protein	NA	Q4ZA54	Staphylococcus_virus	100.0	1.4e-62
VDZ24442.1|326865_327540_+	phage protein	NA	Q4ZAK7	Staphylococcus_virus	97.8	1.2e-127
VDZ24444.1|327532_328288_+	hypothetical phage-related protein	NA	C8CGZ1	Staphylococcus_phage	92.8	3.3e-131
VDZ24447.1|328287_328644_+	phage protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
VDZ24449.1|328640_329882_+	prophage L54a, replicative DNA helicase	NA	A0A0E3T8L1	Staphylococcus_phage	98.5	4.5e-226
VDZ24451.1|329878_330094_+	hypothetical phage-related protein	NA	A9CR72	Staphylococcus_phage	98.6	6.3e-35
VDZ24453.1|330096_330321_+	putative phi ETA-like protein	NA	A0A059T665	Staphylococcus_phage	98.6	3.5e-36
VDZ24456.1|330331_330736_+	hypothetical phage-related protein	NA	Q4ZDX8	Staphylococcus_virus	97.8	8.7e-70
VDZ24458.1|330740_330926_+	phage protein	NA	A0A2I6PDN7	Staphylococcus_phage	96.7	3.5e-26
VDZ24460.1|330926_331232_+	Uncharacterised protein	NA	Q4ZA45	Staphylococcus_virus	100.0	2.2e-49
VDZ24463.1|331359_331719_+	PVL ORF-50-like family	NA	B2ZYW3	Staphylococcus_phage	98.3	2.5e-60
VDZ24466.1|331719_331968_+	phage family protein	NA	A0A2I6PDI0	Staphylococcus_phage	96.3	1.5e-40
VDZ24469.1|331981_332392_+	putative phage PVL protein	NA	A0A1P8CN10	Staphylococcus_phage	68.4	6.1e-47
VDZ24472.1|332391_332667_+	Phage protein	NA	Q4ZA41	Staphylococcus_virus	100.0	1.3e-45
VDZ24475.1|332659_332908_+	Phage protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
VDZ24477.1|332900_333437_+	dUTPase family protein	NA	A0A1P8L6E0	Staphylococcus_phage	99.4	1.4e-94
VDZ24480.1|333473_333758_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ24483.1|333774_333981_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ24486.1|333977_334184_+	phage protein	NA	Q4ZCV6	Staphylococcus_virus	98.5	7.1e-20
VDZ24489.1|334180_334333_+	transcriptional activator rinB-like protein	NA	B7T0I1	Staphylococcus_virus	98.0	1.2e-19
VDZ24492.1|334400_334601_+	putative exported phage protein	NA	A0A2I6PEG6	Staphylococcus_phage	95.5	1.6e-24
VDZ24495.1|334649_335021_+	E family protein	NA	A0A2I6PF19	Staphylococcus_phage	100.0	3.8e-64
VDZ24497.1|335094_335532_+	phage regulatory protein	NA	A0A2I6PEN3	Staphylococcus_phage	98.6	4.3e-75
VDZ24499.1|335688_336003_+	HNH endonuclease family protein	NA	M9QQL5	Staphylococcus_phage	100.0	2.5e-56
VDZ24502.1|336203_336437_+|terminase	Phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	98.7	8.0e-36
VDZ24504.1|336426_338118_+|terminase	terminase large subunit	terminase	Q4ZD20	Staphylococcus_virus	99.1	0.0e+00
VDZ24506.1|338122_339361_+|portal	portal protein	portal	A0A2I6PER5	Staphylococcus_phage	99.5	7.6e-234
VDZ24509.1|339344_340118_+|protease	phage protease	protease	A0A2I6PEQ7	Staphylococcus_phage	98.4	3.9e-135
VDZ24511.1|340129_341293_+|capsid	putative phage capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	99.0	1.5e-215
VDZ24513.1|341361_341640_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	98.9	6.0e-46
VDZ24515.1|341651_341984_+	phage protein	NA	M9QX19	Staphylococcus_phage	99.1	2.4e-57
VDZ24518.1|341980_342382_+	putative phiSLT protein	NA	A0A0K1LL98	Staphylococcus_phage	100.0	1.1e-67
VDZ24520.1|342382_342778_+	phage protein	NA	A0A0K1LKC0	Staphylococcus_phage	99.2	1.5e-66
VDZ24522.1|342812_343454_+|tail	major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	98.1	1.8e-117
VDZ24525.1|343545_344001_+|tail	major tail protein	tail	Q9B0D4	Staphylococcus_phage	98.0	1.2e-75
VDZ24528.1|344058_344409_+	putative gp48	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
VDZ24530.1|344450_344609_+	putative gp49	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
VDZ24532.1|344622_350823_+	TP901 family prophage L54a	NA	A0A0K1LKC4	Staphylococcus_phage	98.6	0.0e+00
VDZ24535.1|350822_351647_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	1.6e-158
VDZ24538.1|351655_353239_+|tail	prophage endopeptidase tail family protein	tail	Q4ZD01	Staphylococcus_virus	99.1	1.3e-305
VDZ24540.1|353238_353529_+	putative gp53	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
VDZ24542.1|353544_355455_+	putative minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	99.4	0.0e+00
VDZ24544.1|355454_356921_+|tail	putative phage tail protein	tail	A0A2I6PDQ5	Staphylococcus_phage	97.5	1.8e-250
VDZ24547.1|356920_357310_+	phage-like protein	NA	Q4ZCZ7	Staphylococcus_virus	96.9	6.4e-62
VDZ24549.1|357302_357467_+	phage protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
VDZ24551.1|357512_357812_+	hypothetical phage-related protein	NA	M9QRV2	Staphylococcus_phage	98.0	2.2e-30
VDZ24554.1|358360_358663_+|holin	holin	holin	B7T0L0	Staphylococcus_virus	94.0	3.8e-46
VDZ24556.1|358674_360129_+	amidase	NA	A0A0N6WMR3	Staphylococcus_phage	95.9	1.4e-279
362299:362317	attR	AATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	425301	442071	2843795		Staphylococcus_phage(30.77%)	18	NA	NA
VDZ24745.1|425301_426768_+	Inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
VDZ24748.1|426792_428334_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
VDZ24751.1|428427_429564_-	Integrase	NA	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
VDZ24754.1|429647_430433_-	transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	58.6	1.2e-09
VDZ24757.1|430549_430777_+	phage protein	NA	NA	NA	NA	NA
VDZ24760.1|430822_431083_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ24763.1|431129_431276_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ24765.1|431493_431787_+	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	46.1	1.7e-14
VDZ24768.1|431877_434241_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.1	1.3e-136
VDZ24771.1|434662_435007_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	4.2e-41
VDZ24774.1|435231_435438_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ24777.1|435424_436483_+	pahtogenicity island protein	NA	A0A0K2CZ99	Paenibacillus_phage	25.4	3.9e-13
VDZ24780.1|436665_437157_+	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	2.3e-24
VDZ24783.1|437463_438168_-	toxic shock syndrome toxin-1	NA	NA	NA	NA	NA
VDZ24785.1|438628_438979_+	pathogenicity island protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	62.4	1.8e-18
VDZ24788.1|439097_439610_+	pathogenicity island protein	NA	Q4ZE83	Staphylococcus_phage	99.4	5.5e-69
VDZ24791.1|440381_441182_+	enterotoxin C-bovine	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.0	3.1e-50
VDZ24794.1|441348_442071_-	staphylococcal enterotoxin L	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.8e-26
>prophage 3
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	766649	774470	2843795		Hokovirus(16.67%)	10	NA	NA
VDZ25618.1|766649_767705_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
VDZ25620.1|767704_768391_-	Response regulator SaeR	NA	NA	NA	NA	NA
VDZ25623.1|768365_768839_-	DoxX family protein	NA	NA	NA	NA	NA
VDZ25626.1|769181_769622_-	lipoprotein	NA	NA	NA	NA	NA
VDZ25629.1|769901_770486_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ25631.1|770584_771298_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
VDZ25634.1|771301_771721_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
VDZ25637.1|771722_772391_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
VDZ25639.1|772741_773335_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
VDZ25641.1|773318_774470_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.5	9.2e-24
>prophage 4
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	786442	800878	2843795		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
VDZ25668.1|786442_787501_+	histidinol-phosphate aminotransferase	NA	A0A0H3TLT9	Faustovirus	27.3	1.1e-20
VDZ25671.1|787898_788447_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VDZ25674.1|789049_789967_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.8	1.6e-07
VDZ25677.1|790248_791754_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
VDZ25680.1|792093_792594_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	70.8	2.2e-51
VDZ25683.1|792613_793480_-	Integral membrane domain protein	NA	NA	NA	NA	NA
VDZ25686.1|794280_794679_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.7	4.3e-53
VDZ25689.1|794641_796747_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
VDZ25692.1|796864_797836_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
VDZ25695.1|798163_799177_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
VDZ25697.1|799163_800120_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
VDZ25700.1|800116_800878_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 5
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	1045650	1054123	2843795		Synechococcus_phage(33.33%)	8	NA	NA
VDZ26391.1|1045650_1046133_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	3.4e-20
VDZ26393.1|1046119_1047952_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	2.1e-46
VDZ26396.1|1047951_1048215_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
VDZ26398.1|1048216_1048888_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VDZ26400.1|1048880_1051070_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.7	3.0e-140
VDZ26402.1|1051048_1052533_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
VDZ26404.1|1052525_1053554_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.2e-61
VDZ26406.1|1053556_1054123_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	1105569	1133745	2843795	tRNA,transposase	Staphylococcus_phage(83.33%)	23	NA	NA
VDZ26506.1|1105569_1106052_+	Phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
VDZ26508.1|1106113_1107253_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VDZ26510.1|1107379_1107937_+	YlbN-like protein	NA	NA	NA	NA	NA
VDZ26512.1|1108016_1108190_+	50S ribosomalprotein L32p	NA	NA	NA	NA	NA
VDZ26514.1|1108219_1108600_-	arsenate reductase, putative	NA	A0A2H4PQT9	Staphylococcus_phage	98.1	1.0e-56
VDZ26516.1|1108617_1109910_-	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.6e-224
VDZ26518.1|1109909_1110224_-	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
VDZ26520.1|1110745_1112245_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
VDZ26522.1|1112728_1113772_+	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	9.1e-196
VDZ26524.1|1113778_1114411_+	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
VDZ26526.1|1114421_1115603_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
VDZ26528.1|1115615_1116080_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
VDZ26530.1|1116219_1117008_-	insertion element protein	NA	A0A0C5AEA5	Paenibacillus_phage	51.4	5.7e-49
VDZ26532.1|1117031_1117760_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.0	2.9e-23
VDZ26534.1|1117864_1118866_-	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.0e-184
VDZ26536.1|1119099_1119927_+	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
VDZ26538.1|1120497_1120899_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
VDZ26540.1|1121018_1121582_-	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
VDZ26542.1|1121578_1122532_-	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
VDZ26544.1|1122641_1123823_+	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.2	4.7e-217
VDZ26546.1|1124110_1126528_+|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
VDZ26548.1|1126549_1126861_+	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
VDZ26550.1|1127187_1133745_+	LPXTG-motif cell wall anchor domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	96.7	5.5e-307
>prophage 7
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	1257827	1266870	2843795	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
VDZ26755.1|1257827_1258832_+	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
VDZ26756.1|1258833_1259859_+|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VDZ26757.1|1259881_1261021_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
VDZ26758.1|1261039_1261300_+	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
VDZ26760.1|1261574_1263854_+	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
VDZ26761.1|1264056_1266330_+	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.3	1.1e-63
VDZ26762.1|1266351_1266870_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 8
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	1336277	1344589	2843795	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
VDZ26884.1|1336277_1338077_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
VDZ26886.1|1338300_1339407_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
VDZ26888.1|1339537_1340215_+|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
VDZ26890.1|1340217_1341318_+	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
VDZ26892.1|1341431_1342778_+	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
VDZ26894.1|1342787_1343678_+	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
VDZ26896.1|1343803_1344589_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	1.8e-18
>prophage 9
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	1810913	1950984	2843795	tRNA,protease,holin,transposase,integrase,tail,terminase,bacteriocin,head,capsid	Staphylococcus_phage(60.87%)	168	1891544:1891564	1946547:1946567
VDZ27701.1|1810913_1813316_-|tRNA	Phenylalanyl-tRNA synthetase beta chain	tRNA	NA	NA	NA	NA
VDZ27703.1|1813315_1814374_-|tRNA	Phenylalanyl-tRNA synthetase alpha chain	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
VDZ27705.1|1814754_1815495_-	SpoU rRNA Methylase family protein	NA	NA	NA	NA	NA
VDZ27707.1|1815877_1816201_-	heme-degrading monooxygenase isdG	NA	NA	NA	NA	NA
VDZ27709.1|1816219_1816954_-	NPQTN specific sortase B	NA	NA	NA	NA	NA
VDZ27711.1|1817015_1817984_-	iron/heme permease	NA	NA	NA	NA	NA
VDZ27713.1|1817993_1818872_-	Heme transporter IsdDEF, lipoprotein IsdE	NA	NA	NA	NA	NA
VDZ27715.1|1818868_1819945_-	Heme transporter IsdDEF, membrane component IsdD	NA	NA	NA	NA	NA
VDZ27717.1|1819944_1820628_-	surface anchored protein	NA	NA	NA	NA	NA
VDZ27719.1|1820836_1821901_+	iron-regulated heme-iron binding protein	NA	NA	NA	NA	NA
VDZ27721.1|1822103_1824029_+	iron-regulated cell wall-anchored protein	NA	NA	NA	NA	NA
VDZ27723.1|1824263_1825202_-	Abortive infection bacteriophage resistance protein	NA	A0A059NT88	Lactococcus_phage	44.3	6.7e-73
VDZ27725.1|1825536_1826982_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A059T7Q7	Staphylococcus_phage	97.1	5.7e-289
VDZ27727.1|1826962_1827400_-|holin	holin, phage phi LC3 family	holin	A7YGY0	Staphylococcus_virus	97.2	5.9e-72
VDZ27729.1|1827450_1829463_-|tail	phage-related tail fiber	tail	Q4ZA81	Staphylococcus_virus	96.3	0.0e+00
VDZ27731.1|1829475_1831380_-	phage-related cell wall hydrolase	NA	B7T0E8	Staphylococcus_virus	98.4	0.0e+00
VDZ27733.1|1831516_1831822_-	phage protein	NA	A0A059T679	Staphylococcus_phage	100.0	5.2e-43
VDZ27735.1|1831861_1832044_-	phage protein	NA	Q4ZA85	Staphylococcus_virus	100.0	4.3e-29
VDZ27737.1|1832044_1832422_-	phage-like protein	NA	Q4ZA86	Staphylococcus_virus	99.2	2.6e-60
VDZ27739.1|1832421_1834245_-	phiETA ORF57-like protein	NA	Q4ZA88	Staphylococcus_virus	98.5	0.0e+00
VDZ27741.1|1834244_1836155_-	Putative major teichoic acid biosynthesis protein C	NA	B7T0E3	Staphylococcus_virus	97.8	0.0e+00
VDZ27743.1|1836169_1838071_-|tail	prophage endopeptidase tail family protein	tail	B7T0E2	Staphylococcus_virus	97.0	0.0e+00
VDZ27745.1|1838079_1839027_-	phi 11 orf43	NA	Q8SDT6	Staphylococcus_phage	99.0	8.9e-182
VDZ27747.1|1839039_1842504_-	phage tape measure protein	NA	S4V989	Staphylococcus_phage	98.2	4.1e-261
VDZ27749.1|1842520_1842865_-	phi 11 orf41	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
VDZ27751.1|1842894_1843260_-	phi 11 orf40	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
VDZ27753.1|1843321_1843903_-|tail	phage major tail protein, TP901-1 family; phi 11 orf39	tail	B7T0D7	Staphylococcus_virus	100.0	3.1e-105
VDZ27755.1|1843920_1844304_-	phi 11 orf38	NA	B7T0D6	Staphylococcus_virus	100.0	3.5e-68
VDZ27757.1|1844315_1844663_-	phi 11 orf37	NA	B7T0D5	Staphylococcus_virus	100.0	2.4e-60
VDZ27759.1|1844662_1844965_-	phage-like protein	NA	A4ZFB6	Staphylococcus_virus	96.0	1.7e-49
VDZ27761.1|1844961_1845294_-	phi 11 orf36	NA	B7T0D4	Staphylococcus_virus	99.1	1.6e-53
VDZ27763.1|1845302_1845590_-	phage-like protein	NA	B7T0D3	Staphylococcus_virus	92.6	3.8e-43
VDZ27765.1|1845611_1846586_-|capsid,head	Phage head protein/Phage major capsid protein	capsid,head	E0Y3L0	Staphylococcus_virus	98.8	1.7e-180
VDZ27767.1|1846599_1847220_-	phi 11 orf33	NA	B2ZYY4	Staphylococcus_phage	94.2	3.0e-69
VDZ27769.1|1847328_1847499_-	Uncharacterised protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
VDZ27771.1|1847571_1848567_-|head	phage putative head morphogenesis protein, SPP1 gp7 family Mu50B	head	E0Y3K7	Staphylococcus_virus	99.7	9.9e-184
VDZ27773.1|1848573_1850109_-	phage-like protein	NA	Q4ZDN2	Staphylococcus_virus	96.9	3.4e-284
VDZ27775.1|1850119_1851409_-|terminase	phage-associated terminase large subunit	terminase	B7T0C6	Staphylococcus_virus	98.6	1.2e-253
VDZ27777.1|1851411_1851906_-|terminase	Phage terminase, small subunit	terminase	B7T0C5	Staphylococcus_virus	98.8	6.6e-88
VDZ27779.1|1852093_1852516_-	phage transcriptional activator RinA	NA	S4V7K2	Staphylococcus_phage	97.1	3.0e-73
VDZ27781.1|1852539_1852686_-	phage protein	NA	A0A059T5A8	Staphylococcus_phage	97.9	3.7e-15
VDZ27783.1|1852686_1853052_-	phage protein	NA	I1W652	Staphylococcus_phage	99.2	4.8e-59
VDZ27785.1|1853052_1853226_-	int gene activator RinB	NA	Q4ZBK0	Staphylococcus_phage	93.0	3.5e-20
VDZ27787.1|1853222_1853429_-	Protein of uncharacterised function (DUF1381)	NA	B7T0C2	Staphylococcus_virus	95.6	6.0e-19
VDZ27789.1|1853425_1853632_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ27791.1|1853648_1853933_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ27793.1|1853969_1854506_-	dUTPase family protein	NA	A0A1P8L6E0	Staphylococcus_phage	99.4	1.4e-94
VDZ27795.1|1854498_1854747_-	Phage protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
VDZ27797.1|1854739_1855024_-	phage protein	NA	A0A2I6PE24	Staphylococcus_phage	63.8	1.3e-24
VDZ27799.1|1855020_1855458_-	phage protein	NA	NA	NA	NA	NA
VDZ27801.1|1855454_1855865_-	putative phage PVL protein	NA	Q4ZA42	Staphylococcus_virus	99.3	5.5e-72
VDZ27803.1|1855875_1856124_-	phage family protein	NA	S4V683	Staphylococcus_phage	97.6	5.2e-41
VDZ27805.1|1856124_1856484_-	PVL ORF-50-like family	NA	B2ZYW3	Staphylococcus_phage	98.3	2.5e-60
VDZ27807.1|1856611_1856917_-	Uncharacterised protein	NA	Q4ZA45	Staphylococcus_virus	99.0	6.4e-49
VDZ27809.1|1856917_1857103_-	Protein of uncharacterised function (DUF3113)	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
VDZ27811.1|1857107_1857512_-	hypothetical phage-related protein	NA	A7TWN5	Staphylococcus_phage	97.8	6.6e-70
VDZ27813.1|1857522_1857747_-	putative phi ETA-like protein	NA	A0A059T665	Staphylococcus_phage	98.6	3.5e-36
VDZ27815.1|1857759_1857918_-	Uncharacterised protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
VDZ27817.1|1857914_1858700_-	ORF017	NA	A0A0H4J332	Staphylococcus_phage	100.0	1.9e-145
VDZ27819.1|1858712_1859474_-	Conserved phage C-terminus (Phg_2220_C)	NA	A0A2I6PDW4	Staphylococcus_phage	97.2	2.5e-118
VDZ27821.1|1859535_1859946_+	Uncharacterised protein	NA	Q4ZDQ7	Staphylococcus_virus	99.3	4.2e-72
VDZ27823.1|1859800_1860130_-	Uncharacterised protein	NA	Q4ZDQ8	Staphylococcus_virus	93.6	5.3e-49
VDZ27825.1|1860131_1860800_-	phage protein	NA	Q4ZAK7	Staphylococcus_virus	97.7	7.5e-127
VDZ27827.1|1860813_1861233_-	prophage L54a, single-stranded DNA binding protein	NA	Q4ZA54	Staphylococcus_virus	100.0	1.4e-62
VDZ27829.1|1861232_1861856_-	putative phage topoisomerase	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
VDZ27831.1|1861848_1862070_-	phage protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
VDZ27833.1|1862079_1862340_-	phage protein	NA	Q9MBS4	Staphylococcus_prophage	100.0	1.5e-43
VDZ27835.1|1862431_1862752_-	Uncharacterised protein	NA	Q9MBS5	Staphylococcus_prophage	100.0	1.6e-55
VDZ27837.1|1862752_1862920_-	phage protein	NA	Q9MBS6	Staphylococcus_prophage	94.5	4.4e-20
VDZ27839.1|1862903_1863041_-	Uncharacterised protein	NA	Q4ZA61	Staphylococcus_virus	95.6	2.0e-15
VDZ27841.1|1863100_1863331_+	phage protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
VDZ27843.1|1863305_1863482_-	phi PV83 orf 10-like protein	NA	S4SVC9	Staphylococcus_phage	96.6	2.4e-24
VDZ27845.1|1863497_1864253_-	anti repressor	NA	A0A0H4J326	Staphylococcus_phage	99.2	9.6e-139
VDZ27847.1|1864309_1864522_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ27849.1|1864511_1864655_-	phage protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
VDZ27851.1|1864670_1864889_-	helix-turn-helix family protein	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
VDZ27853.1|1865030_1865750_+	putative phage repressor protein	NA	A0A1X9H038	Staphylococcus_phage	76.0	9.0e-94
VDZ27855.1|1865767_1866493_+	phage protein	NA	Q4ZA70	Staphylococcus_virus	100.0	6.9e-126
VDZ27857.1|1866524_1866962_+	Uncharacterised protein	NA	Q4ZA71	Staphylococcus_virus	100.0	3.3e-75
VDZ27859.1|1866955_1867363_+	MTH538 TIR-like domain (DUF1863)	NA	Q4ZA72	Staphylococcus_virus	100.0	2.9e-73
VDZ27861.1|1867359_1867557_-	Uncharacterised protein	NA	Q4ZA73	Staphylococcus_virus	100.0	1.5e-30
VDZ27863.1|1867666_1869052_+|integrase	integrase	integrase	Q4ZA74	Staphylococcus_virus	100.0	3.6e-264
VDZ27865.1|1869503_1870358_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
VDZ27867.1|1870633_1870858_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDZ27869.1|1871056_1871527_+	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	96.8	4.8e-80
VDZ27871.1|1871639_1872083_+	comK family protein	NA	NA	NA	NA	NA
VDZ27873.1|1872069_1872513_-	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
VDZ27875.1|1872810_1873446_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VDZ27877.1|1873882_1874596_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
VDZ27878.1|1874853_1875156_+	membrane protein	NA	NA	NA	NA	NA
VDZ27880.1|1875411_1875777_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	97.5	2.4e-58
VDZ27882.1|1875773_1876127_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.2e-20
VDZ27884.1|1876376_1877210_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	6.0e-158
VDZ27886.1|1877421_1878330_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
VDZ27888.1|1878454_1879648_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
VDZ27890.1|1880018_1881611_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
VDZ27892.1|1881905_1882676_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	96.8	2.0e-139
VDZ27894.1|1882656_1883136_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.3e-84
VDZ27896.1|1883195_1883453_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
VDZ27898.1|1883449_1884451_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	4.1e-185
VDZ27900.1|1884455_1885934_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.9	9.3e-279
VDZ27902.1|1886092_1886575_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	8.4e-80
VDZ27904.1|1886886_1887501_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	84.3	3.7e-40
VDZ27906.1|1887581_1888577_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	4.3e-70
VDZ27908.1|1888652_1889279_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	82.2	1.1e-79
VDZ27910.1|1889319_1889661_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	2.3e-55
VDZ27912.1|1889761_1890334_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
VDZ27914.1|1890709_1891546_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VDZ27916.1|1891533_1892238_+	ABC transporter permease	NA	NA	NA	NA	NA
1891544:1891564	attL	TAAAATATCAAAATATAAAAT	NA	NA	NA	NA
VDZ27918.1|1892351_1892798_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VDZ27920.1|1892879_1893104_-|transposase	transposase	transposase	NA	NA	NA	NA
VDZ27922.1|1893920_1894295_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VDZ27924.1|1894284_1894665_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VDZ27926.1|1894872_1895313_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VDZ27928.1|1895357_1896971_+	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ27930.1|1896985_1897285_+	ESAT-6 family protein	NA	NA	NA	NA	NA
VDZ27932.1|1897521_1898700_-	Type I restriction-modification system, specificity subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.4	5.0e-41
VDZ27934.1|1898692_1900249_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	97.5	5.7e-287
VDZ27936.1|1900612_1901332_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	94.6	2.6e-125
VDZ27938.1|1901457_1902177_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	91.6	5.1e-121
VDZ27940.1|1902234_1902957_-|protease	Serine protease splB	protease	A0A2H4PQN0	Staphylococcus_phage	96.7	8.7e-129
VDZ27942.1|1903081_1903411_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.3	2.2e-55
VDZ27944.1|1903578_1903788_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	92.4	4.4e-25
VDZ27946.1|1904752_1905316_+	beta-lactamase	NA	A0A2H4PQH6	Staphylococcus_phage	62.4	5.6e-51
VDZ27948.1|1905789_1906488_-	lantibiotic ABC transporter protein	NA	A0A2H4PQH0	Staphylococcus_phage	93.1	7.1e-112
VDZ27950.1|1906484_1907246_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	94.9	2.5e-126
VDZ27952.1|1907242_1907935_-	lantibiotic immunity protein F	NA	A0A2H4PQG7	Staphylococcus_phage	97.4	1.4e-120
VDZ27954.1|1907957_1909331_-|protease	epidermin leader peptide processing serine protease EpiP	protease	A0A2H4PQH1	Staphylococcus_phage	94.5	9.7e-246
VDZ27956.1|1909340_1909859_-	lantibiotic modifying enzyme	NA	A0A2H4PQG9	Staphylococcus_phage	97.7	1.9e-93
VDZ27958.1|1909874_1911119_-	Epidermin biosynthesis protein epiC	NA	A0A2H4PQH9	Staphylococcus_phage	88.6	1.2e-210
VDZ27960.1|1911111_1914105_-|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	92.3	0.0e+00
VDZ27962.1|1914169_1914313_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	100.0	3.8e-20
VDZ27964.1|1915077_1915866_-	insertion element protein	NA	A0A0C5AEA5	Paenibacillus_phage	51.4	5.7e-49
VDZ27966.1|1915889_1916618_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.0	2.9e-23
VDZ27968.1|1916693_1916837_-	lantibiotic protein	NA	A0A2H4PQH4	Staphylococcus_phage	76.6	9.9e-13
VDZ27970.1|1917079_1917472_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	99.2	1.8e-72
VDZ27972.1|1917493_1918063_-	Leukotoxin LukD	NA	A0A2H4PQH7	Staphylococcus_phage	97.4	3.1e-97
VDZ27974.1|1918064_1918331_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	4.9e-45
VDZ27976.1|1918463_1919000_-	Leukocidin S subunit lukE	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	9.7e-93
VDZ27978.1|1919727_1920177_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ27980.1|1920197_1920974_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
VDZ27982.1|1921369_1921864_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ27984.1|1921939_1922989_+|integrase	putative integrase	integrase	A0A2H4JB53	uncultured_Caudovirales_phage	89.4	1.3e-181
VDZ27986.1|1924193_1924748_-	Putative hydrolase ydeN	NA	NA	NA	NA	NA
VDZ27988.1|1925066_1926467_-	Protoporphyrinogen IX oxidase, aerobic	NA	NA	NA	NA	NA
VDZ27990.1|1926490_1927414_-	Ferrochelatase, protoheme ferro-lyase	NA	NA	NA	NA	NA
VDZ27992.1|1927471_1928509_-	Uroporphyrinogen III decarboxylase	NA	NA	NA	NA	NA
VDZ27993.1|1928770_1929274_+	signal transduction protein	NA	NA	NA	NA	NA
VDZ27994.1|1929397_1930621_-	EcsB	NA	NA	NA	NA	NA
VDZ27996.1|1930613_1931354_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	5.4e-25
VDZ27998.1|1931487_1931910_+	adenosine 5'-monophosphoramidase	NA	NA	NA	NA	NA
VDZ28000.1|1932051_1932417_+	gas vesicle protein-protein	NA	NA	NA	NA	NA
VDZ28002.1|1933148_1933706_+	membrane protein	NA	NA	NA	NA	NA
VDZ28004.1|1933910_1934873_+	Foldase protein PrsA precursor	NA	NA	NA	NA	NA
VDZ28006.1|1934993_1935935_-	CMP-binding-factor 1	NA	NA	NA	NA	NA
VDZ28008.1|1935931_1938868_-	membrane associated protein	NA	NA	NA	NA	NA
VDZ28010.1|1938857_1940054_-	DNA repair exonuclease family protein YhaO	NA	NA	NA	NA	NA
VDZ28012.1|1941131_1941476_-	putative transcriptional regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
VDZ28014.1|1941544_1942669_-	membrane protein	NA	NA	NA	NA	NA
VDZ28016.1|1942847_1943312_-	HTH domain protein, binds to mecA promoter region	NA	NA	NA	NA	NA
VDZ28018.1|1943667_1944291_-	Two-component response regulator-like protein	NA	NA	NA	NA	NA
VDZ28020.1|1944312_1945425_-	Two-component sensor protein	NA	NA	NA	NA	NA
VDZ28022.1|1945587_1946409_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
VDZ28024.1|1946859_1948245_-	Fumarate hydratase class II	NA	NA	NA	NA	NA
1946547:1946567	attR	ATTTTATATTTTGATATTTTA	NA	NA	NA	NA
VDZ28026.1|1948440_1948836_-	membrane protein	NA	NA	NA	NA	NA
VDZ28028.1|1949578_1949731_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VDZ28030.1|1949755_1950355_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
VDZ28032.1|1950513_1950984_-|tRNA	tRNA (cytosine34-2-O-)-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 10
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	1979591	2027337	2843795	protease,transposase,holin,integrase,tail,terminase,portal,head,capsid	Staphylococcus_phage(66.18%)	71	1993093:1993107	2028894:2028908
VDZ28070.1|1979591_1980320_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.0	2.9e-23
VDZ28072.1|1980343_1981132_+	insertion element protein	NA	A0A0C5AEA5	Paenibacillus_phage	51.4	5.7e-49
VDZ28074.1|1981300_1981816_-	ThiJ/PfpI family protein	NA	NA	NA	NA	NA
VDZ28076.1|1981945_1982107_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VDZ28078.1|1982579_1983581_-	BcgI-like restriction enzyme subunit beta	NA	A0A1W6JNN3	Staphylococcus_phage	40.1	1.0e-55
VDZ28080.1|1983564_1985457_-	BcgI-like restriction enzyme subunit alpha	NA	A0A1W6JNK1	Staphylococcus_phage	70.9	5.6e-268
VDZ28082.1|1985968_1986937_-	Panton-Valentine leukocidin LukF-PV chain precursor	NA	Q9MBN2	Staphylococcus_prophage	100.0	2.0e-181
VDZ28084.1|1986938_1987865_-	leukocidin chain lukM precursor	NA	Q9MBN3	Staphylococcus_prophage	99.7	4.2e-176
VDZ28086.1|1988212_1988968_-	Autolysin	NA	Q9MBN4	Staphylococcus_prophage	100.0	3.4e-152
VDZ28088.1|1988979_1989234_-|holin	Phage holin	holin	Q9MBN5	Staphylococcus_prophage	100.0	5.3e-41
VDZ28090.1|1990127_1990415_-	phage protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
VDZ28092.1|1990461_1990614_-	phage protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
VDZ28094.1|1990603_1994389_-	phage minor structural protein	NA	D2JLF9	Staphylococcus_phage	97.3	0.0e+00
1993093:1993107	attL	ATTTTTCAACATCAT	NA	NA	NA	NA
VDZ28096.1|1994404_1995895_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	99.0	1.4e-295
VDZ28098.1|1995894_2000544_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A1V0E5H1	Staphylococcus_phage	97.7	0.0e+00
VDZ28100.1|2000781_2001228_-	Bacteriophage	NA	D2JLF5	Staphylococcus_phage	99.3	1.2e-72
VDZ28102.1|2001292_2002246_-|tail	phage major tail, phi13 family protein	tail	A7TWD0	Staphylococcus_phage	95.6	2.5e-168
VDZ28104.1|2002246_2002627_-	phi PVL orf 12-like protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
VDZ28106.1|2002623_2003001_-	gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	99.2	4.0e-61
VDZ28108.1|2003000_2003336_-|head,tail	phage head-tail adaptor	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
VDZ28110.1|2003322_2003655_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	D2JLF0	Staphylococcus_phage	99.1	6.2e-58
VDZ28112.1|2003663_2003822_-	Bacteriophage	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
VDZ28114.1|2003857_2005105_-|capsid	phage major capsid protein, HK97 family	capsid	Q8SDK8	Staphylococcus_phage	97.3	1.1e-208
VDZ28116.1|2005192_2005777_-|head,protease	prohead protease	head,protease	D2JLE7	Staphylococcus_phage	99.5	2.9e-106
VDZ28118.1|2005769_2007020_-|portal	portal protein	portal	D2JLE6	Staphylococcus_phage	99.8	9.7e-237
VDZ28120.1|2007025_2007265_-	phi PVL orf 3-like protein	NA	A7TWC1	Staphylococcus_phage	97.5	3.5e-34
VDZ28122.1|2007239_2008934_-	phage Terminase family protein	NA	D2JLE4	Staphylococcus_phage	99.3	0.0e+00
VDZ28124.1|2008936_2009404_-|terminase	phage terminase small subunit	terminase	D2JLE3	Staphylococcus_phage	98.7	1.6e-80
VDZ28126.1|2009533_2009887_-	phage endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	1.3e-66
VDZ28128.1|2009893_2010346_-	hypothetical phage-related protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
VDZ28130.1|2010460_2010922_-	Phage protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.6e-72
VDZ28132.1|2010944_2011145_-	phage protein	NA	D2JLD9	Staphylococcus_phage	98.5	2.4e-28
VDZ28134.1|2011144_2011795_-	Uncharacterised protein	NA	D2JLD8	Staphylococcus_phage	98.1	3.8e-115
VDZ28136.1|2011953_2012103_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	1.4e-17
VDZ28138.1|2012099_2012306_-	Protein of uncharacterised function (DUF1381)	NA	B7T0C2	Staphylococcus_virus	95.6	6.0e-19
VDZ28140.1|2012342_2012684_-	dUTPase family protein	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	4.8e-53
VDZ28142.1|2012676_2012925_-	Phage protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
VDZ28144.1|2012917_2013193_-	Phage protein	NA	Q4ZA41	Staphylococcus_virus	100.0	1.3e-45
VDZ28146.1|2013192_2013603_-	putative phage PVL protein	NA	A0A1P8CN10	Staphylococcus_phage	68.4	6.1e-47
VDZ28148.1|2013605_2013815_-	Phage protein	NA	A0A059T5A6	Staphylococcus_phage	88.2	5.9e-30
VDZ28150.1|2013825_2014074_-	phage family protein	NA	A0A2I6PDI0	Staphylococcus_phage	95.1	4.0e-41
VDZ28152.1|2014074_2014446_-	PVL ORF-50-like family protein	NA	Q9MBR4	Staphylococcus_prophage	96.7	1.4e-50
VDZ28154.1|2014457_2014715_-	helix-turn-helix DNA binding protein	NA	Q9MBR5	Staphylococcus_prophage	100.0	5.4e-41
VDZ28156.1|2014715_2014901_-	PV83 orf 23-like protein	NA	Q9MBR6	Staphylococcus_prophage	96.7	1.7e-25
VDZ28158.1|2014905_2015310_-	hypothetical phage-related protein	NA	A7TWN5	Staphylococcus_phage	96.3	3.3e-69
VDZ28160.1|2015320_2015542_-	putative phi ETA-like protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
VDZ28162.1|2015544_2015760_-	hypothetical phage-related protein	NA	Q4ZA49	Staphylococcus_virus	100.0	6.3e-35
VDZ28164.1|2015813_2016998_-	prophage L54a, replicative DNA helicase	NA	Q4ZA50	Staphylococcus_virus	98.2	8.4e-214
VDZ28166.1|2016994_2017351_-	phage protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
VDZ28168.1|2017350_2018106_-	hypothetical phage-related protein	NA	B7T0A7	Staphylococcus_virus	100.0	1.7e-143
VDZ28170.1|2018098_2018773_-	phage protein	NA	Q4ZA53	Staphylococcus_virus	98.2	2.0e-127
VDZ28172.1|2018786_2019215_-	Single-stranded DNA-binding protein, phage associated	NA	D2JGK2	Staphylococcus_phage	92.3	1.1e-59
VDZ28174.1|2019214_2019853_-	putative phage single-strand DNA binding protein	NA	Q9MBS2	Staphylococcus_prophage	100.0	1.7e-115
VDZ28176.1|2019852_2020332_-	phage protein	NA	Q9MBS3	Staphylococcus_prophage	100.0	8.1e-83
VDZ28178.1|2020346_2020607_-	phage protein	NA	Q9MBS4	Staphylococcus_prophage	100.0	1.5e-43
VDZ28180.1|2020701_2020863_-	phage protein	NA	A9CR58	Staphylococcus_phage	96.2	3.3e-20
VDZ28182.1|2020846_2021077_-	phage protein	NA	Q9MBS7	Staphylococcus_prophage	100.0	1.5e-31
VDZ28184.1|2021147_2021360_+	Uncharacterised protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	56.5	3.2e-15
VDZ28186.1|2021287_2021452_-	phi PV83 orf 10-like protein	NA	A0A2H4J3T9	uncultured_Caudovirales_phage	61.1	9.4e-07
VDZ28188.1|2021467_2022217_-	putative phage anti-repressor protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	7.6e-136
VDZ28190.1|2022277_2022520_+	Uncharacterised protein	NA	Q4ZCA7	Staphylococcus_virus	50.0	2.8e-15
VDZ28192.1|2022467_2022755_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ28194.1|2022809_2023019_+	Uncharacterised protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
VDZ28196.1|2023011_2023152_-	phage protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
VDZ28198.1|2023166_2023610_-	hypothetical phage-related protein	NA	W5R971	Staphylococcus_phage	98.6	4.1e-73
VDZ28200.1|2023657_2023870_-	helix-turn-helix family protein	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
VDZ28202.1|2024021_2024753_+	CI-like repressor, phage associated	NA	M9NUL0	Staphylococcus_phage	72.2	5.6e-91
VDZ28204.1|2024764_2024911_+	phage protein	NA	U5U441	Staphylococcus_phage	100.0	4.3e-19
VDZ28206.1|2024907_2025093_+	phage protein	NA	A0A1X9H0K5	Staphylococcus_phage	98.4	2.5e-24
VDZ28208.1|2025128_2026112_+	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	92.0	9.9e-168
VDZ28210.1|2026290_2027337_+|integrase	phage integrase family protein	integrase	Q4ZDS8	Staphylococcus_virus	98.9	1.8e-199
2028894:2028908	attR	ATTTTTCAACATCAT	NA	NA	NA	NA
>prophage 11
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	2109396	2120903	2843795	integrase	Staphylococcus_phage(45.45%)	15	2101221:2101244	2124078:2124101
2101221:2101244	attL	CCCACCCCAACTTGCATTGTCTGT	NA	NA	NA	NA
VDZ28308.1|2109396_2109888_-	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
VDZ28309.1|2110053_2111112_-	pahtogenicity island protein	NA	NA	NA	NA	NA
VDZ28310.1|2111098_2111305_-	pathogenicity island protein	NA	NA	NA	NA	NA
VDZ28311.1|2111529_2111874_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
VDZ28312.1|2112544_2114917_-	Putative DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	41.3	6.7e-146
VDZ28313.1|2115008_2115308_-	bovine pathogenicity island protein Orf16	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
VDZ28314.1|2115308_2115533_-	pathogenicity island protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	3.4e-15
VDZ28315.1|2115522_2115672_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VDZ28316.1|2115668_2115986_-	mobile element-associated transcriptional regulator, putative	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
VDZ28317.1|2115999_2116641_-	putative prophage antirepressor	NA	A0A2H4JB17	uncultured_Caudovirales_phage	82.2	2.3e-96
VDZ28318.1|2116644_2116857_-	putative transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	45.5	7.9e-06
VDZ28319.1|2117010_2117673_+	putative transcriptional regulator	NA	NA	NA	NA	NA
VDZ28320.1|2117685_2118858_+|integrase	mobile element-associated integrase, putative	integrase	A0A1W6JQD3	Staphylococcus_phage	98.5	3.5e-220
VDZ28321.1|2118926_2120543_-	heat shock protein 60 family chaperone GroEL	NA	A0A240F779	uncultured_virus	54.9	1.2e-157
VDZ28322.1|2120618_2120903_-	Heat shock protein 60 family co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2124078:2124101	attR	CCCACCCCAACTTGCATTGTCTGT	NA	NA	NA	NA
>prophage 12
LR134090	Staphylococcus aureus strain NCTC9555 genome assembly, chromosome: 1	2843795	2553634	2601927	2843795	transposase,holin	Bacillus_phage(36.36%)	47	NA	NA
VDZ28723.1|2553634_2554330_-|holin	putative glycine betaine/carnitine/choline transport system permease protein	holin	NA	NA	NA	NA
VDZ28724.1|2554329_2555271_-|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	holin	NA	NA	NA	NA
VDZ28725.1|2555287_2555923_-|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	holin	NA	NA	NA	NA
VDZ28726.1|2555919_2557146_-|holin	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative	holin	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
VDZ28727.1|2557815_2558415_-	molecular chaperone GroEL	NA	NA	NA	NA	NA
VDZ28728.1|2558594_2560232_+	Amino acid permease	NA	NA	NA	NA	NA
VDZ28729.1|2560538_2561891_+	Carboxylesterase type B	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
VDZ28730.1|2561952_2563140_-	chloramphenicol resistance protein	NA	NA	NA	NA	NA
VDZ28731.1|2563534_2564311_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VDZ28732.1|2564303_2564966_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	W8CYL7	Bacillus_phage	34.5	1.7e-17
VDZ28733.1|2565310_2566387_-	endoglucanase M	NA	NA	NA	NA	NA
VDZ28734.1|2566742_2567009_-	addiction module toxin	NA	NA	NA	NA	NA
VDZ28735.1|2567008_2567266_-	prevent-host-death family protein	NA	NA	NA	NA	NA
VDZ28736.1|2567626_2568082_+	lipoprotein	NA	NA	NA	NA	NA
VDZ28737.1|2568249_2569827_-	Ferredoxin-dependent glutamate synthase	NA	NA	NA	NA	NA
VDZ28738.1|2570020_2570770_+	membrane protein	NA	NA	NA	NA	NA
VDZ28739.1|2570993_2572187_-	Antibiotic resistance protein	NA	NA	NA	NA	NA
VDZ28740.1|2572198_2572948_-	nickel transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
VDZ28741.1|2572940_2573756_-	Oligopeptide transporter putative ATPase domain protein	NA	G9BWD6	Planktothrix_phage	29.8	3.6e-14
VDZ28742.1|2573752_2574622_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VDZ28743.1|2574618_2575554_-	Oligopeptide transporter putative membrane permease domain protein	NA	NA	NA	NA	NA
VDZ28744.1|2575566_2577165_-	Oligopeptide transporter putative substrate binding domain protein	NA	NA	NA	NA	NA
VDZ28745.1|2577307_2578609_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VDZ28746.1|2578601_2579420_-	nicotianamine synthase	NA	NA	NA	NA	NA
VDZ28747.1|2579430_2580252_-	Putative Similar to diaminopimelate epimerase	NA	NA	NA	NA	NA
VDZ28748.1|2581192_2581555_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ28749.1|2581818_2582637_-	short chain dehydrogenase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	4.4e-12
VDZ28750.1|2582872_2584411_+	aminobenzoyl-glutamate transport protein	NA	NA	NA	NA	NA
VDZ28751.1|2584522_2584945_-|transposase	transposase	transposase	NA	NA	NA	NA
VDZ28752.1|2585400_2585820_-	membrane protein	NA	NA	NA	NA	NA
VDZ28753.1|2586070_2586766_-	Short-chain alcohol dehydrogenase	NA	W8CYX9	Bacillus_phage	36.5	8.6e-09
VDZ28754.1|2587065_2587347_+	IraB protein	NA	NA	NA	NA	NA
VDZ28755.1|2587606_2587798_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ28756.1|2588151_2588445_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ28757.1|2588447_2588774_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VDZ28758.1|2588773_2590129_-	Insertion sequenceATP-binding protein, putative	NA	NA	NA	NA	NA
VDZ28759.1|2590128_2590911_-	putative lipoprotein	NA	NA	NA	NA	NA
VDZ28760.1|2591154_2591931_-	lipoprotein	NA	NA	NA	NA	NA
VDZ28761.1|2592234_2595096_-	DNA/RNA helicase of DEAD/DEAH box family	NA	Q5YA94	Bacillus_phage	27.9	2.4e-28
VDZ28762.1|2595097_2595490_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA	NA
VDZ28763.1|2595792_2597430_+	Phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	37.7	6.4e-95
VDZ28764.1|2597713_2597980_+	exported protein	NA	NA	NA	NA	NA
VDZ28765.1|2598123_2598432_+	membrane protein	NA	NA	NA	NA	NA
VDZ28766.1|2598538_2598709_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ28767.1|2598752_2599946_-	Macrolide-efflux protein	NA	NA	NA	NA	NA
VDZ28768.1|2600122_2600989_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
VDZ28769.1|2601198_2601927_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.0	2.9e-23
