The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	568228	154451	161445	568228		Mycoplasma_phage(16.67%)	9	NA	NA
VDZ62180.1|154451_155738_-	Peptidase B	NA	Q6GYZ8	Mycoplasma_phage	38.2	3.8e-34
VDZ62183.1|155809_156010_-	Believed to be involved in assembly of Fe-S clusters	NA	NA	NA	NA	NA
VDZ62186.1|156011_156347_-	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
VDZ62189.1|156348_158199_-	Chaperone protein HscA	NA	F2Y2E1	Organic_Lake_phycodnavirus	39.7	5.0e-104
VDZ62192.1|158214_158730_-	Chaperone protein HscB	NA	NA	NA	NA	NA
VDZ62195.1|158805_159129_-	iron-binding protein iscA	NA	A0A2H4N7N5	Lake_Baikal_phage	47.7	1.2e-21
VDZ62198.1|159148_159535_-	scaffold protein	NA	A0A218MKD1	uncultured_virus	77.3	1.6e-52
VDZ62201.1|159561_160776_-	cysteine desulfurase	NA	H7BUW1	unidentified_phage	36.1	1.7e-31
VDZ62204.1|160953_161445_-	DNA-binding transcriptional regulator IscR	NA	M4M9K8	Vibrio_phage	28.4	4.1e-05
>prophage 2
LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	568228	279254	290510	568228		Ostreococcus_tauri_virus(12.5%)	16	NA	NA
VDZ62616.1|279254_280157_-	Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO	NA	H8ZJK8	Ostreococcus_tauri_virus	40.0	2.2e-36
VDZ62619.1|280365_280545_+	corresponds to STY2919 from Accession AL513382: Salmonella typhi CT18	NA	NA	NA	NA	NA
VDZ62622.1|280587_281025_-	DNA-binding protein H-NS	NA	NA	NA	NA	NA
VDZ62625.1|281704_282154_+	Putative inner membrane protein	NA	NA	NA	NA	NA
VDZ62629.1|282218_282581_-	Putative cytoplasmic protein	NA	NA	NA	NA	NA
VDZ62632.1|282730_283078_+	Bacterial protein of uncharacterised function (DUF883)	NA	NA	NA	NA	NA
VDZ62635.1|283154_283871_-	Transcriptional regulator, GntR family domain / Aspartate aminotransferase	NA	A0A1X9I5H2	Streptococcus_phage	29.7	4.7e-10
VDZ62639.1|283816_284512_-	Transcriptional regulator, GntR family domain / Aspartate aminotransferase	NA	NA	NA	NA	NA
VDZ62642.1|284602_285034_+	4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein	NA	NA	NA	NA	NA
VDZ62646.1|285218_285464_+	Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib	NA	A0A0M7REK7	Lactobacillus_phage	43.8	1.1e-11
VDZ62650.1|285460_285871_+	Ribonucleotide reduction protein NrdI	NA	A0A1D6X8A1	Bacillus_phage	36.1	2.9e-12
VDZ62653.1|285843_286266_+	Ribonucleotide reductase of class Ib (aerobic), alpha subunit	NA	A0A2H4P8B4	Corynebacterium_phage	49.2	1.4e-25
VDZ62656.1|286569_286692_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ62659.1|286759_287989_+	Ribonucleotide reductase of class Ib (aerobic), alpha subunit	NA	V9VI16	Lactococcus_phage	45.7	6.9e-102
VDZ62662.1|287999_288962_+	Ribonucleotide reductase of class Ib (aerobic), beta subunit	NA	A0A0M4S3B4	Mycobacterium_phage	71.5	1.1e-131
VDZ62665.1|289307_290510_+	glycine betaine transporter ATP-binding subunit	NA	G3M9Y6	Bacillus_virus	39.9	1.3e-28
>prophage 1
LR134123	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 3	1497228	193364	201886	1497228		Microcystis_phage(28.57%)	11	NA	NA
VDZ66316.1|193364_193916_+	Glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	32.0	2.6e-16
VDZ66317.1|193915_194665_+	Vitamin B12 ABC transporter, ATPase component BtuD	NA	A0A285PWH2	Cedratvirus	29.2	3.0e-07
VDZ66318.1|194746_195211_+	Probable lipoprotein nlpC precursor	NA	A0A1V0DZX6	Clostridioides_phage	38.5	7.8e-14
VDZ66319.1|195324_195930_+	Selenoprotein O and cysteine-containing homologs	NA	A0A075BSJ0	Microcystis_phage	34.6	2.0e-22
VDZ66320.1|195905_196430_+	Selenoprotein O and cysteine-containing homologs	NA	A0A075BSJ0	Microcystis_phage	40.6	1.5e-26
VDZ66321.1|196423_196765_+	Selenoprotein O and cysteine-containing homologs	NA	NA	NA	NA	NA
VDZ66322.1|197237_197468_-	2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha	NA	NA	NA	NA	NA
VDZ66323.1|197412_198099_-	2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha	NA	S4W5F1	Pandoravirus	52.2	3.0e-62
VDZ66324.1|198061_198190_-	2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha	NA	NA	NA	NA	NA
VDZ66325.1|198361_199177_-	protein YdiA	NA	NA	NA	NA	NA
VDZ66326.1|199507_201886_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.9	1.6e-171
>prophage 2
LR134123	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 3	1497228	470804	478044	1497228		Escherichia_phage(83.33%)	12	NA	NA
VDZ66618.1|470804_471413_-	Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD	NA	A0A077SLS7	Escherichia_phage	35.2	6.4e-24
VDZ66619.1|471455_472313_-	Anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA	NA
VDZ66620.1|472314_472932_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.1	1.7e-72
VDZ66621.1|472928_474101_-	Anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	45.9	2.2e-89
VDZ66622.1|474150_474276_-	Anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	55.3	4.6e-06
VDZ66623.1|474272_475148_-	Anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	51.7	7.4e-66
VDZ66624.1|475194_475380_-	Anaerobic dimethyl sulfoxide reductase chain A	NA	NA	NA	NA	NA
VDZ66625.1|475595_475802_-	Uncharacterized protein YnfE	NA	NA	NA	NA	NA
VDZ66626.1|475905_476616_+	Hypothetical UPF0257 lipoprotein ynfC precursor	NA	NA	NA	NA	NA
VDZ66627.1|476609_477170_-	Spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VDZ66628.1|477227_477569_-	putative secreted protein	NA	NA	NA	NA	NA
VDZ66629.1|477717_478044_+	Protein of uncharacterised function UPF0060	NA	A0A218MNG8	uncultured_virus	53.9	4.9e-23
>prophage 3
LR134123	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 3	1497228	924759	928864	1497228	tRNA	Enterobacteria_phage(50.0%)	8	NA	NA
VDZ67122.1|924759_925020_+	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	69.6	4.3e-22
VDZ67123.1|924982_925201_+	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	62.3	2.3e-13
VDZ67124.1|925151_925580_+	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	53.1	1.5e-24
VDZ67125.1|925548_925698_+	outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	63.0	2.4e-09
VDZ67126.1|925842_926277_+	Universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	50.0	1.8e-28
VDZ67127.1|926491_926641_+|tRNA	C32 tRNA thiolase	tRNA	A0A0U2S5Z2	Escherichia_phage	76.9	9.1e-09
VDZ67128.1|926618_927428_+|tRNA	C32 tRNA thiolase	tRNA	A0A0U2S5Z2	Escherichia_phage	94.9	2.6e-118
VDZ67129.1|927475_928864_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	8.7e-53
>prophage 4
LR134123	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 3	1497228	1018003	1055151	1497228	tail,terminase,coat	Escherichia_phage(23.68%)	50	NA	NA
VDZ67214.1|1018003_1019893_-	putative kinase	NA	A0A286S259	Klebsiella_phage	71.4	3.8e-269
VDZ67215.1|1019943_1020549_-	putative kinase	NA	A0A286S259	Klebsiella_phage	59.3	1.4e-50
VDZ67216.1|1021035_1021416_-	COG2116: Formate/nitrite family of transporters	NA	A0A286S2A6	Klebsiella_phage	78.6	7.2e-58
VDZ67217.1|1021425_1021908_-	Domain of uncharacterised function (DUF1833)	NA	A0A286S2B1	Klebsiella_phage	74.4	1.2e-62
VDZ67218.1|1021894_1022368_-	alkanesulfonate ABC transporter permease	NA	A0A286S298	Klebsiella_phage	66.4	1.5e-57
VDZ67219.1|1022360_1025315_-|tail	prothage tail length tape measure	tail	A0A2H4J107	uncultured_Caudovirales_phage	36.5	8.2e-101
VDZ67220.1|1025434_1025767_-	lipoprotein	NA	M1PRT9	Cellulophaga_phage	67.6	1.7e-31
VDZ67221.1|1025833_1026001_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67222.1|1026168_1026621_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67223.1|1026707_1027484_-	Bacterial Ig-like domain (group 2)	NA	A0A059VG08	Pseudomonas_phage	43.0	2.0e-22
VDZ67224.1|1027598_1028297_-	Uncharacterised protein	NA	A0A059VG08	Pseudomonas_phage	51.8	6.9e-06
VDZ67225.1|1028293_1028464_-	Uncharacterised protein	NA	A0A059VF88	Pseudomonas_phage	54.3	4.4e-07
VDZ67226.1|1028460_1028844_-	Uncharacterised protein	NA	G8C7Q1	Escherichia_phage	50.0	8.1e-17
VDZ67227.1|1028845_1029067_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67228.1|1029084_1029228_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67229.1|1029229_1029640_-	Uncharacterised protein	NA	A0A0H5AUF0	Pseudomonas_phage	39.7	6.6e-09
VDZ67230.1|1029643_1029856_-	Uncharacterised protein	NA	G8C7P8	Escherichia_phage	55.2	4.0e-10
VDZ67231.1|1029895_1030255_-	Uncharacterised protein	NA	G8C7P7	Escherichia_phage	76.1	1.3e-45
VDZ67232.1|1030308_1031010_-|coat	P22 coat protein - gene protein 5	coat	G8C7P7	Escherichia_phage	75.9	8.5e-89
VDZ67233.1|1031024_1031885_-	Uncharacterised protein	NA	G8C7P6	Escherichia_phage	57.1	2.6e-55
VDZ67234.1|1031935_1032778_-	Phage Mu protein F like protein.	NA	I6PD76	Cronobacter_phage	56.6	1.2e-76
VDZ67235.1|1033089_1033416_-	Uncharacterised protein	NA	G8C7P4	Escherichia_phage	62.8	1.2e-26
VDZ67236.1|1033399_1034515_-	Uncharacterised protein	NA	G8C7P4	Escherichia_phage	73.8	9.8e-156
VDZ67237.1|1034519_1035824_-	Terminase-like family.	NA	A0A1B1P9C9	Acinetobacter_phage	59.8	8.3e-146
VDZ67238.1|1035801_1036794_-|terminase	terminase small subunit	terminase	I6X6R5	Burkholderia_virus	39.5	7.4e-38
VDZ67239.1|1036862_1037108_-	Protein of uncharacterised function (DUF2560)	NA	A0A286N2R1	Klebsiella_phage	90.1	5.7e-32
VDZ67240.1|1037230_1037491_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67241.1|1037703_1037904_-	Uncharacterised protein	NA	A0A286SGR9	Klebsiella_phage	84.6	3.5e-24
VDZ67242.1|1037848_1038124_-	Uncharacterised protein	NA	K7PGW4	Enterobacterial_phage	84.0	6.6e-05
VDZ67243.1|1038131_1038761_-	lytic enzyme	NA	G8C7W0	Escherichia_phage	84.2	8.1e-99
VDZ67244.1|1038760_1039042_-	putative prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	74.2	7.7e-33
VDZ67245.1|1039028_1039424_-	putative prophage membrane protein	NA	G8C7V8	Escherichia_phage	72.3	5.5e-45
VDZ67246.1|1040929_1041751_-	putative late gene regulator	NA	K7PKS8	Enterobacteria_phage	73.3	2.9e-112
VDZ67247.1|1041747_1041888_-	Gifsy-1 Prophage protein	NA	NA	NA	NA	NA
VDZ67248.1|1041884_1042250_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	79.5	6.4e-48
VDZ67249.1|1042242_1042692_-	NinB family protein	NA	Q8VNP6	Enterobacteria_phage	50.0	1.2e-35
VDZ67250.1|1042953_1043574_-	Swarming motility protein ybiA	NA	NA	NA	NA	NA
VDZ67251.1|1044093_1044585_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67252.1|1045474_1045939_-	Ren protein from phage origin	NA	M1FPD5	Enterobacteria_phage	56.7	8.6e-21
VDZ67253.1|1045935_1046637_-	replication protein P	NA	A0A0M3ULE2	Salmonella_phage	79.1	1.7e-100
VDZ67254.1|1046633_1047566_-	protein YfdO	NA	A0A077KB11	Edwardsiella_phage	79.5	9.7e-56
VDZ67255.1|1047751_1048294_-	regulatory protein CII from bacteriophage origin	NA	M9NZI6	Enterobacteria_phage	86.7	7.8e-82
VDZ67256.1|1048388_1048619_-	antirepressor protein Cro	NA	A0A2H4FNF3	Salmonella_phage	68.9	4.5e-23
VDZ67257.1|1049077_1049413_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67258.1|1049477_1049597_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67259.1|1049797_1050817_+	ATPase	NA	H2BD62	Pseudomonas_phage	35.8	1.6e-51
VDZ67260.1|1051457_1051601_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67261.1|1051662_1051854_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA	NA
VDZ67262.1|1051862_1052021_+	Uncharacterised protein	NA	K7P7H7	Enterobacteria_phage	59.6	3.8e-13
VDZ67263.1|1052160_1055151_+	putative exodeoxyribonuclease VIII	NA	H6WRX1	Salmonella_phage	61.5	2.8e-298
>prophage 5
LR134123	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 3	1497228	1260614	1312104	1497228	terminase,head,protease,lysis,integrase	Cronobacter_phage(28.0%)	75	1288629:1288643	1309211:1309225
VDZ67510.1|1260614_1261865_-	Uncharacterised protein	NA	A0A2H4YH15	Raoultella_phage	29.6	6.3e-10
VDZ67511.1|1261951_1264435_-	Uncharacterised protein	NA	F1C5A7	Cronobacter_phage	45.6	9.1e-202
VDZ67512.1|1264421_1264817_-	NlpC/P60 family.	NA	F1C5F2	Cronobacter_phage	52.4	1.8e-35
VDZ67513.1|1264813_1265284_-	Uncharacterised protein	NA	R9TPR6	Aeromonas_phage	35.9	1.3e-24
VDZ67514.1|1265283_1265760_-	Uncharacterised protein	NA	F1C5F0	Cronobacter_phage	58.9	7.9e-46
VDZ67515.1|1265801_1266335_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67516.1|1266334_1268683_-	phage tape measure protein	NA	A0A1B1W284	Salmonella_phage	47.6	4.5e-126
VDZ67517.1|1268742_1269147_-	Uncharacterised protein	NA	A0A286S1N7	Klebsiella_phage	40.8	5.9e-18
VDZ67518.1|1269319_1269796_-	Uncharacterised protein	NA	H6WRU9	Salmonella_phage	59.3	1.9e-36
VDZ67519.1|1270166_1270874_-	P22AR C-terminal domain	NA	H6WRU8	Salmonella_phage	40.8	3.1e-38
VDZ67520.1|1270860_1271028_-	Uncharacterised protein	NA	G9L6D7	Escherichia_phage	76.5	6.6e-16
VDZ67521.1|1271330_1271591_+	Uncharacterised protein	NA	G9L6D6	Escherichia_phage	56.6	1.3e-18
VDZ67522.1|1271710_1272406_-	Uncharacterised protein	NA	F1C5E8	Cronobacter_phage	56.3	9.1e-67
VDZ67523.1|1272457_1273210_-	putative immunoglobulin domain protein	NA	G0ZNE6	Cronobacter_phage	42.2	1.4e-44
VDZ67524.1|1273278_1273668_-	Uncharacterised protein	NA	G0ZNE4	Cronobacter_phage	55.5	8.4e-38
VDZ67525.1|1273664_1274105_-	Uncharacterised protein	NA	A0A1V0E5P5	Salmonella_phage	54.1	5.2e-36
VDZ67526.1|1274107_1274455_-	Uncharacterised protein	NA	G0ZNE2	Cronobacter_phage	62.6	3.5e-35
VDZ67527.1|1274628_1275009_-	gp11	NA	F1C5E2	Cronobacter_phage	56.1	1.1e-29
VDZ67528.1|1275011_1275413_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67529.1|1275422_1276499_-	gp9	NA	F1C5E1	Cronobacter_phage	77.4	2.8e-160
VDZ67530.1|1276510_1276951_-	Uncharacterised protein	NA	F1C5E0	Cronobacter_phage	64.4	2.0e-43
VDZ67531.1|1276954_1277413_-	Uncharacterised protein	NA	F1C5D9	Cronobacter_phage	60.5	6.2e-24
VDZ67532.1|1277393_1278149_-	gp7	NA	A0A0M3LQ78	Mannheimia_phage	59.2	1.0e-71
VDZ67533.1|1278201_1278474_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67534.1|1278499_1279492_-|head	phage head morphogenesis protein	head	F1C5D8	Cronobacter_phage	68.0	9.2e-113
VDZ67535.1|1279442_1280909_-	gp5	NA	F1C5D7	Cronobacter_phage	60.8	1.3e-155
VDZ67536.1|1280919_1282395_-|terminase	phage terminase large subunit	terminase	A0A1W6JNY3	Morganella_phage	83.9	8.8e-253
VDZ67537.1|1282394_1282997_-	Uncharacterised protein	NA	G8C7P2	Escherichia_phage	81.5	4.9e-77
VDZ67538.1|1283078_1283336_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67539.1|1283421_1283667_-	Protein of uncharacterised function (DUF2560)	NA	A0A286N2R1	Klebsiella_phage	87.7	3.1e-30
VDZ67540.1|1283788_1283881_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67541.1|1283877_1283994_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67542.1|1284113_1284491_-|lysis	lysis protein	lysis	M9NYX9	Enterobacteria_phage	56.2	3.1e-13
VDZ67543.1|1284478_1284982_-	lysozyme-like protein	NA	M9P0E5	Enterobacteria_phage	92.7	1.7e-86
VDZ67544.1|1284959_1285184_-|lysis	lysis S family protein	lysis	M9NZI9	Enterobacteria_phage	89.2	5.7e-31
VDZ67545.1|1285603_1285891_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67546.1|1285964_1286654_-	phage antitermination protein Q	NA	I6PDF8	Cronobacter_phage	56.3	2.5e-61
VDZ67547.1|1286650_1286767_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67548.1|1286763_1287129_-	Crossover junction endodeoxyribonuclease rusA	NA	K7PM48	Enterobacteria_phage	83.1	7.4e-52
VDZ67549.1|1287121_1287571_-	NinB family protein	NA	Q8VNP6	Enterobacteria_phage	50.7	2.6e-35
VDZ67550.1|1288434_1288698_-	colicin immunity protein/pyocin immunity protein	NA	NA	NA	NA	NA
1288629:1288643	attL	ATATCTTTTTTACGA	NA	NA	NA	NA
VDZ67551.1|1288694_1289111_-	putative klebicin D activity protein	NA	NA	NA	NA	NA
VDZ67552.1|1289274_1290774_-	putative klebicin D activity protein	NA	NA	NA	NA	NA
VDZ67553.1|1290874_1292011_-	Uncharacterised protein	NA	A0A1Z1LZI1	Serratia_phage	28.0	3.0e-19
VDZ67554.1|1292215_1292458_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67555.1|1292450_1293572_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	73.7	2.4e-146
VDZ67556.1|1293568_1293862_-	Ren protein from phage origin	NA	O48423	Enterobacteria_phage	59.1	3.4e-23
VDZ67557.1|1293858_1294560_-	replication protein P	NA	A0A0M3ULE2	Salmonella_phage	80.0	1.0e-102
VDZ67558.1|1294556_1295489_-	protein YfdO	NA	A0A077KB11	Edwardsiella_phage	77.4	4.8e-55
VDZ67559.1|1295673_1296207_-	regulatory protein CII from bacteriophage origin	NA	M9NZI6	Enterobacteria_phage	83.9	5.1e-78
VDZ67560.1|1296223_1296457_-	putative antirepressor protein Cro	NA	A0A0P0ZDD7	Stx2-converting_phage	61.0	1.3e-17
VDZ67561.1|1296498_1297251_+	P22 repressor protein c2	NA	A0A286S2B2	Klebsiella_phage	62.6	1.3e-71
VDZ67562.1|1297682_1297820_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67563.1|1297812_1298019_+	putative prophage Kil protein	NA	K7P6H3	Enterobacteria_phage	76.5	2.5e-25
VDZ67564.1|1298472_1298757_+	Uncharacterised protein	NA	G8C7T1	Escherichia_phage	85.1	3.1e-42
VDZ67565.1|1298775_1299621_+	RecT protein	NA	A0A1I9KF88	Aeromonas_phage	60.3	1.4e-69
VDZ67566.1|1299617_1300298_+	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	91.6	1.0e-123
VDZ67567.1|1300294_1300723_+	Uncharacterised protein	NA	M9NYX4	Enterobacteria_phage	81.0	4.9e-63
VDZ67568.1|1300719_1301376_+	adenine-specific DNA methyltransferase	NA	G8C7S6	Escherichia_phage	86.1	5.7e-111
VDZ67569.1|1301372_1301591_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67570.1|1301587_1301881_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67571.1|1302025_1302241_+	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	NA	A0A0N7C211	Escherichia_phage	66.7	9.7e-20
VDZ67572.1|1302242_1302473_+	Uncharacterised protein	NA	G8C7S3	Escherichia_phage	81.6	5.5e-29
VDZ67573.1|1302578_1302827_+	putative phage excisionase	NA	S4TND0	Salmonella_phage	53.1	1.8e-17
VDZ67574.1|1302858_1304139_+|integrase	putative phage integrase	integrase	A0A0P0ZGT7	Escherichia_phage	59.2	4.4e-144
VDZ67575.1|1304165_1304612_-	YcgN (Fragment)	NA	NA	NA	NA	NA
VDZ67576.1|1304705_1305365_-	FIG094199: Fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
VDZ67577.1|1305382_1305664_-	Protein YcgL	NA	NA	NA	NA	NA
VDZ67578.1|1305790_1306492_+	Septum site-determining protein MinC	NA	NA	NA	NA	NA
VDZ67579.1|1306515_1307328_+	cell division inhibitor MinD	NA	NA	NA	NA	NA
VDZ67580.1|1307331_1307601_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
VDZ67581.1|1307697_1308813_-	Ribonuclease D	NA	NA	NA	NA	NA
VDZ67582.1|1310202_1310613_-	long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA	NA
1309211:1309225	attR	ATATCTTTTTTACGA	NA	NA	NA	NA
VDZ67583.1|1310788_1311370_-	Starvation lipoprotein Slp paralog	NA	NA	NA	NA	NA
VDZ67584.1|1311408_1312104_-|protease	Inactive homolog of metal-dependent proteases, putative molecular chaperone	protease	NA	NA	NA	NA
>prophage 6
LR134123	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 3	1497228	1333508	1356996	1497228	coat,protease	Moraxella_phage(20.0%)	23	NA	NA
VDZ67612.1|1333508_1334441_-|protease	Probable protease HtpX	protease	NA	NA	NA	NA
VDZ67613.1|1334627_1336676_-|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	33.3	2.2e-84
VDZ67614.1|1336695_1337379_-	ProQ: influences osmotic activation of compatible solute ProP	NA	NA	NA	NA	NA
VDZ67615.1|1337476_1337974_-	COG1956, GAF domain-containing protein	NA	NA	NA	NA	NA
VDZ67616.1|1338106_1339390_+	PqiA family integral membrane protein	NA	NA	NA	NA	NA
VDZ67617.1|1339358_1341992_+	Paraquat-inducible protein B	NA	NA	NA	NA	NA
VDZ67618.1|1341998_1343513_+	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
VDZ67619.1|1343622_1343865_+	Protein of uncharacterised function (DUF1480)	NA	NA	NA	NA	NA
VDZ67620.1|1343966_1344158_+	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA	NA
VDZ67621.1|1344154_1344808_-	Serine/threonine protein phosphatase 1	NA	K7P6H8	Enterobacteria_phage	53.5	5.3e-61
VDZ67622.1|1344971_1345922_+	Virulence factor VirK	NA	NA	NA	NA	NA
VDZ67623.1|1346667_1347240_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
VDZ67624.1|1347261_1347780_+	Sigma-fimbriae uncharacterized subunit	NA	NA	NA	NA	NA
VDZ67625.1|1347797_1348547_+	Sigma-fimbriae chaperone protein	NA	NA	NA	NA	NA
VDZ67626.1|1348549_1350874_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
VDZ67627.1|1350892_1351840_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
VDZ67628.1|1352228_1352570_-	Putative periplasmic or exported protein	NA	NA	NA	NA	NA
VDZ67629.1|1352583_1353453_-	Copper resistance protein D	NA	NA	NA	NA	NA
VDZ67630.1|1353456_1353831_-	Protein yobA precursor	NA	NA	NA	NA	NA
VDZ67631.1|1353965_1354196_+	DNA polymerase III theta subunit	NA	H9C187	Pectobacterium_phage	57.4	3.5e-15
VDZ67632.1|1354274_1354934_+	Exodeoxyribonuclease X	NA	A0A2I7RF71	Vibrio_phage	27.7	1.2e-15
VDZ67633.1|1354936_1355854_-|protease	protease 2	protease	A0A1V0SHT0	Klosneuvirus	30.4	8.4e-28
VDZ67634.1|1355850_1356996_-|protease	protease 2	protease	NA	NA	NA	NA
>prophage 7
LR134123	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 3	1497228	1486386	1497114	1497228		Enterobacteria_phage(55.56%)	13	NA	NA
VDZ67778.1|1486386_1487523_-	UDP-N-acetylglucosamine 2-epimerase	NA	K7YFA0	Megavirus	28.7	1.2e-31
VDZ67779.1|1487775_1488645_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	67.0	7.5e-111
VDZ67780.1|1488667_1489051_-	dTDP-D-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.6	4.1e-21
VDZ67781.1|1489128_1489725_-	dTDP-D-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	55.4	4.6e-51
VDZ67782.1|1490783_1490987_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ67783.1|1491120_1491633_+	uridine diphosphate galacturonate 4-epimerase	NA	A0A2K9L0I7	Tupanvirus	23.6	1.4e-08
VDZ67784.1|1492329_1493160_-	UDP-glucose 6-dehydrogenase	NA	A0A1J0FA55	Only_Syngen_Nebraska_virus	54.5	1.2e-81
VDZ67785.1|1493194_1493497_-	UDP-glucose dehydrogenase	NA	NA	NA	NA	NA
VDZ67786.1|1493671_1494226_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	58.8	2.3e-52
VDZ67787.1|1494237_1494666_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
VDZ67788.1|1494911_1495046_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
VDZ67789.1|1495164_1496034_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	67.0	1.3e-110
VDZ67790.1|1496052_1497114_-	dTDP-D-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.9	7.0e-103
>prophage 1
LR134124	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 4	791406	5943	15124	791406	tRNA	Enterobacteria_phage(14.29%)	11	NA	NA
VDZ67797.1|5943_7110_-	Integrase	NA	Q7M297	Enterobacteria_phage	53.7	1.2e-116
VDZ67798.1|7427_8147_-	Uncharacterized lipoprotein YgeR precursor	NA	A0A0K1Y8S4	Streptomyces_phage	53.6	1.4e-06
VDZ67799.1|8378_8933_+	Isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA	NA
VDZ67800.1|9038_10556_-|tRNA	lysyl-tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	37.3	1.7e-86
VDZ67801.1|10565_11447_-	peptide chain release factor 2	NA	W8EDB3	Pseudomonas_phage	36.7	1.1e-05
VDZ67802.1|11749_12034_-	Single-stranded-DNA-specific exonuclease RecJ	NA	NA	NA	NA	NA
VDZ67803.1|11981_12800_-	Single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.8	5.2e-21
VDZ67804.1|12858_13167_-	Single-stranded-DNA-specific exonuclease RecJ	NA	A0A0R6PDC6	Moraxella_phage	44.1	1.4e-14
VDZ67805.1|13150_13486_-	Single-stranded-DNA-specific exonuclease RecJ	NA	NA	NA	NA	NA
VDZ67806.1|13491_14205_-	Thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
VDZ67807.1|14227_15124_-	Tyrosine recombinase XerD	NA	S5M9V8	Brevibacillus_phage	29.8	1.8e-19
>prophage 2
LR134124	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 4	791406	193026	199997	791406	capsid,terminase	Salmonella_phage(33.33%)	7	NA	NA
VDZ68002.1|193026_194772_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.6	1.9e-76
VDZ68003.1|194922_196767_+	RNA polymerase sigma factor rpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
VDZ68004.1|196836_197343_-	G:T/U mismatch-specific uracil/thymine DNA-glycosylase	NA	NA	NA	NA	NA
VDZ68005.1|198094_198643_+|terminase	Phage terminase, ATPase subunit	terminase	S4TT96	Salmonella_phage	77.2	3.0e-81
VDZ68006.1|198682_198949_+|terminase	Phage terminase, ATPase subunit	terminase	S4TT96	Salmonella_phage	97.7	1.8e-39
VDZ68007.1|198951_199599_+|capsid	Phage-related capsid packaging protein	capsid	Q6K1J0	Salmonella_virus	90.6	1.4e-106
VDZ68008.1|199595_199997_+|capsid	Phage-related capsid packaging protein	capsid	A0A2I8TV74	Erwinia_phage	95.5	9.5e-69
>prophage 1
LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	770373	230263	239151	770373	tRNA	uncultured_Mediterranean_phage(37.5%)	9	NA	NA
VDZ68889.1|230263_230881_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.1	3.7e-72
VDZ68890.1|230891_233273_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.9	1.1e-217
VDZ68891.1|233525_233711_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	61.0	7.1e-11
VDZ68892.1|233653_233944_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	58.2	4.2e-10
VDZ68893.1|233892_234324_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	52.8	5.0e-31
VDZ68894.1|234907_235456_-	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	41.5	5.5e-27
VDZ68895.1|235460_236252_-	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	42.5	3.2e-44
VDZ68896.1|236260_236872_-	Outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
VDZ68897.1|236994_239151_-	cell division protein	NA	S5VNE3	Mycobacterium_phage	49.5	1.2e-88
>prophage 1
LR134126	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 6	1028324	616861	653031	1028324	integrase,transposase	Enterobacteria_phage(33.33%)	29	631111:631125	655823:655837
VDZ70097.1|616861_618118_+|integrase	prothage integrase	integrase	Q7M297	Enterobacteria_phage	39.6	9.9e-80
VDZ70098.1|618491_619475_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
VDZ70099.1|619680_619935_+	Transposase	NA	NA	NA	NA	NA
VDZ70100.1|620035_620230_+|transposase	transposase	transposase	NA	NA	NA	NA
VDZ70101.1|621130_622291_-	tyrosine permease	NA	NA	NA	NA	NA
VDZ70102.1|622380_623610_-	8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase	NA	NA	NA	NA	NA
VDZ70103.1|623582_624722_-	major facilitator family transporter	NA	NA	NA	NA	NA
VDZ70104.1|624746_625334_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70105.1|625993_626518_-|transposase	IS2 transposase orfB	transposase	Q9ZXG3	Shigella_phage	61.0	5.5e-32
VDZ70106.1|626634_626967_-	Protein of uncharacterised function (DUF1493).	NA	NA	NA	NA	NA
VDZ70107.1|627079_628741_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
VDZ70108.1|628753_629674_+	hemagglutinin-like protein	NA	NA	NA	NA	NA
VDZ70109.1|629700_633990_+	hemagglutinin-like protein	NA	NA	NA	NA	NA
631111:631125	attL	GCTACGCTGGGCGCC	NA	NA	NA	NA
VDZ70110.1|633968_638513_+	hemagglutinin-like protein	NA	NA	NA	NA	NA
VDZ70111.1|638572_638845_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70112.1|638908_639649_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70113.1|639654_640029_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70114.1|640089_640338_-	HSP20-like domain of uncharacterised function (DUF1813).	NA	NA	NA	NA	NA
VDZ70115.1|640757_643148_+	protein PalA	NA	NA	NA	NA	NA
VDZ70116.1|644542_644791_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70117.1|645820_646732_-	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA	NA
VDZ70118.1|646788_647811_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70119.1|648101_648323_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70120.1|648972_649584_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70121.1|649747_650827_-	carbohydrate-selective porin OprB	NA	NA	NA	NA	NA
VDZ70122.1|650787_651087_-	carbohydrate-selective porin OprB	NA	NA	NA	NA	NA
VDZ70123.1|651458_651701_+|transposase	transposase IS116/IS110/IS902 family protein	transposase	NA	NA	NA	NA
VDZ70124.1|651661_652054_+|transposase	transposase IS116/IS110/IS902 family protein	transposase	NA	NA	NA	NA
VDZ70125.1|652032_653031_+|integrase	integrase catalytic subunit	integrase	W5R8L2	Staphylococcus_phage	36.4	8.8e-39
655823:655837	attR	GCTACGCTGGGCGCC	NA	NA	NA	NA
>prophage 2
LR134126	Klebsiella aerogenes strain NCTC10006 genome assembly, chromosome: 6	1028324	732961	740695	1028324		uncultured_Mediterranean_phage(50.0%)	10	NA	NA
VDZ70211.1|732961_734587_+	Transglycosylase, Slt family	NA	K7RVN3	Vibrio_phage	31.7	3.2e-06
VDZ70212.1|735200_735470_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70213.1|735590_736223_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70214.1|736219_736414_+	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70215.1|737081_737279_-	single-strand binding protein	NA	NA	NA	NA	NA
VDZ70216.1|737304_737463_-	single-strand binding protein	NA	A0A1B1W281	Salmonella_phage	84.6	7.9e-11
VDZ70217.1|737459_737606_-	single-strand binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	58.3	3.2e-06
VDZ70218.1|738466_739336_+	Excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	41.4	2.6e-55
VDZ70219.1|739402_739804_+	Excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	49.0	2.5e-21
VDZ70220.1|739891_740695_+	Excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	66.7	2.1e-99
>prophage 1
LR134127	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7	277534	56573	64934	277534	tRNA	Enterobacteria_phage(57.14%)	9	NA	NA
VDZ70542.1|56573_58616_+|tRNA	methionyl-tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	23.9	6.0e-42
VDZ70543.1|58600_58702_-	Uncharacterised protein	NA	NA	NA	NA	NA
VDZ70544.1|58754_59219_+	probable lipoprotein STY2386	NA	Q9EYF5	Enterobacteria_phage	39.6	3.4e-25
VDZ70545.1|59262_59730_-	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	79.9	6.1e-67
VDZ70546.1|59783_60503_-	Hypothetical response regulatory protein yehT	NA	A0A2R2ZGH8	Clostridioides_phage	25.5	6.2e-10
VDZ70547.1|60496_62185_-	Autolysin sensor kinase	NA	Q9EYF3	Enterobacteria_phage	84.3	8.8e-257
VDZ70548.1|62384_63116_+	HTH-type transcriptional regulator mlrA	NA	Q9EYF2	Enterobacteria_phage	69.3	2.5e-75
VDZ70549.1|63264_64002_-	Osmoprotectant ABC transporter inner membrane protein YehW	NA	NA	NA	NA	NA
VDZ70550.1|63998_64934_-	Osmoprotectant ABC transporter ATP-binding subunit YehX	NA	Q6GZ03	Mycoplasma_phage	37.6	5.6e-11
>prophage 2
LR134127	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7	277534	161516	169138	277534		Pseudomonas_phage(33.33%)	7	NA	NA
VDZ70655.1|161516_163250_-	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	33.3	2.4e-47
VDZ70656.1|163228_164149_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	46.0	6.2e-63
VDZ70657.1|164295_165024_+	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA	NA
VDZ70658.1|165369_166524_+	ribonucleoside-diphosphate reductase 1 subunit alpha	NA	A0A1W5PTL2	Pseudoalteromonas_phage	75.4	1.3e-158
VDZ70659.1|166570_167653_+	ribonucleoside-diphosphate reductase 1 subunit alpha	NA	I3UMG3	Colwellia_phage	59.2	1.8e-117
VDZ70660.1|167753_168884_+	ribonucleoside-diphosphate reductase class Ia beta subunit	NA	G9IAA3	Pseudomonas_phage	79.4	5.1e-176
VDZ70661.1|168883_169138_+	Ferredoxin	NA	G9IAA2	Pseudomonas_phage	65.3	8.2e-26
