assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635455.1_28307_A01	LR134116	Yersinia intermedia strain NCTC11469 genome assembly, chromosome: 1	1	533088-533340	1	PILER-CR	no		cas3,WYL,csa3,DEDDh,DinG,RT,cas3f,cas3-cas2	Orphan	GTGCGATATGGTTTGCGAGGAATGACTGTCCACGACGCTTTTCATAAAAGAAA	53	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,csa3,DEDDh,DinG,RT,cas3f,cas3-cas2	NA,NA	NA|1487aa|up_9|LR134116.1_517444_521905_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|308aa|up_8|LR134116.1_522602_523526_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|779aa|up_7|LR134116.1_523796_526133_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|218aa|up_6|LR134116.1_526496_527150_+	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB	NA|242aa|up_5|LR134116.1_527146_527872_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|192aa|up_4|LR134116.1_527952_528528_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|up_3|LR134116.1_528538_529129_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|118aa|up_2|LR134116.1_529330_529684_-	PRK12497, PRK12497, YraN family protein	NA|653aa|up_1|LR134116.1_529817_531776_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|300aa|up_0|LR134116.1_531838_532738_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|298aa|down_0|LR134116.1_533434_534328_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|352aa|down_1|LR134116.1_534737_535793_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|235aa|down_2|LR134116.1_535863_536568_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_3|LR134116.1_536683_537580_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|333aa|down_4|LR134116.1_537721_538720_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|132aa|down_5|LR134116.1_538941_539337_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|95aa|down_6|LR134116.1_539640_539925_-	pfam13997, YqjK, YqjK-like protein	NA|132aa|down_7|LR134116.1_539921_540317_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_8|LR134116.1_540319_540625_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|126aa|down_9|LR134116.1_540749_541127_-	pfam06476, DUF1090, Protein of unknown function (DUF1090)
GCA_900635455.1_28307_A01	LR134116	Yersinia intermedia strain NCTC11469 genome assembly, chromosome: 1	2	3601525-3601647	1	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,RT,cas3f,cas3-cas2	Orphan	CCCCTAAAGGGGCCAGCGCAGGCGCTGTTCAAACTGCATTCGCAGT	46	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,RT,cas3f,cas3-cas2	NA,NA	NA|114aa|up_9|LR134116.1_3589337_3589679_+	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|171aa|up_8|LR134116.1_3589850_3590363_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|392aa|up_7|LR134116.1_3590831_3592007_+	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|511aa|up_6|LR134116.1_3592046_3593579_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|365aa|up_5|LR134116.1_3593727_3594822_-	PRK10864, PRK10864, putative methyltransferase; Provisional	NA|147aa|up_4|LR134116.1_3595031_3595472_+	PRK10996, PRK10996, thioredoxin 2; Provisional	NA|252aa|up_3|LR134116.1_3595627_3596383_+	COG3148, COG3148, Uncharacterized conserved protein [Function unknown]	NA|881aa|up_2|LR134116.1_3596540_3599183_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|452aa|up_1|LR134116.1_3599360_3600716_+	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase	NA|114aa|up_0|LR134116.1_3600772_3601114_+	PRK10759, PRK10759, YfiM family lipoprotein	NA|858aa|down_0|LR134116.1_3607629_3610203_-	PRK10865, PRK10865, ATP-dependent chaperone ClpB	NA|245aa|down_1|LR134116.1_3610333_3611068_-	PRK10723, PRK10723, polyphenol oxidase	NA|326aa|down_2|LR134116.1_3611067_3612045_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|244aa|down_3|LR134116.1_3612180_3612912_+	PRK10866, PRK10866, outer membrane protein assembly factor BamD	NA|121aa|down_4|LR134116.1_3613278_3613641_+	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA	NA|386aa|down_5|LR134116.1_3614043_3615201_+	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional	NA|374aa|down_6|LR134116.1_3615284_3616406_-	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional	NA|362aa|down_7|LR134116.1_3616408_3617494_-	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	NA|239aa|down_8|LR134116.1_3617723_3618440_+	PRK11697, PRK11697, two-component system response regulator BtsR	NA|448aa|down_9|LR134116.1_3618913_3620257_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed
GCA_900635455.1_28307_A01	LR134116	Yersinia intermedia strain NCTC11469 genome assembly, chromosome: 1	3	4069870-4070020	2,2	CRISPRCasFinder,PILER-CR	no	cas3f,cas3-cas2	cas3,WYL,csa3,DEDDh,DinG,RT,cas3f,cas3-cas2	Unclear	CATTTCTAAGCTGCCTGCACGGCAGCGAAC,CATTTCTAAGCTGCCTGCACGGCAGCGAACT	30,31	0	0	NA	NA	I-F:I-F	2,2	2	Unclear	cas3,WYL,csa3,DEDDh,DinG,RT,cas3f,cas3-cas2	NA|61aa|up_4|LR134116.1_4064685_4064868_-,NA|41aa|up_2|LR134116.1_4067524_4067647_-,NA|514aa|up_1|LR134116.1_4067704_4069246_-,NA|40aa|up_0|LR134116.1_4069654_4069774_-,NA|62aa|down_2|LR134116.1_4072583_4072769_+,NA|95aa|down_3|LR134116.1_4072803_4073088_+,NA|54aa|down_6|LR134116.1_4077416_4077578_-	NA|200aa|up_9|LR134116.1_4059609_4060209_-	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|181aa|up_8|LR134116.1_4060370_4060913_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|436aa|up_7|LR134116.1_4061061_4062369_-	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|230aa|up_6|LR134116.1_4062390_4063080_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|137aa|up_5|LR134116.1_4063104_4063515_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|61aa|up_4|LR134116.1_4064685_4064868_-	NA	NA|672aa|up_3|LR134116.1_4064889_4066905_-	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|41aa|up_2|LR134116.1_4067524_4067647_-	NA	NA|514aa|up_1|LR134116.1_4067704_4069246_-	NA	NA|40aa|up_0|LR134116.1_4069654_4069774_-	NA	cas3f|339aa|down_0|LR134116.1_4070407_4071424_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas3-cas2|274aa|down_1|LR134116.1_4071420_4072242_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|62aa|down_2|LR134116.1_4072583_4072769_+	NA	NA|95aa|down_3|LR134116.1_4072803_4073088_+	NA	NA|437aa|down_4|LR134116.1_4073399_4074710_+	pfam00529, HlyD, HlyD membrane-fusion protein of T1SS	NA|699aa|down_5|LR134116.1_4074702_4076799_+	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|54aa|down_6|LR134116.1_4077416_4077578_-	NA	NA|266aa|down_7|LR134116.1_4077960_4078758_-	sd00006, TPR, Tetratricopeptide repeat	NA|225aa|down_8|LR134116.1_4079008_4079683_-	pfam10946, DUF2625, Protein of unknown function DUF2625	NA|287aa|down_9|LR134116.1_4079891_4080752_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)
