assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635545.1_30316_G02	LR134142	Salmonella enterica subsp. enterica serovar Sanjuan strain NCTC7406 genome assembly, chromosome: 1	2	995829-996833	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCACCAGCGGGGATAAACCG,GTGTTCCCCGCACCAGCGGGGATAAACCG,GTGTTCCCCGCACCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,16,16	16	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|447aa|up_9|LR134142.1_980253_981594_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|LR134142.1_981614_982955_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|LR134142.1_983032_984175_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_6|LR134142.1_984218_986975_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|LR134142.1_987032_988328_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|LR134142.1_988379_990614_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|LR134142.1_990688_991480_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|LR134142.1_991707_993345_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|LR134142.1_993427_994726_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|LR134142.1_994861_995533_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|101aa|down_0|LR134142.1_996930_997233_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|LR134142.1_997821_998184_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LR134142.1_998619_1000419_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LR134142.1_1000418_1002131_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LR134142.1_1002232_1002967_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|931aa|down_5|LR134142.1_1003308_1006101_+	NF033178, auto_BigA, autotransporter adhesin BigA	NA|223aa|down_6|LR134142.1_1006193_1006862_+	PRK10336, PRK10336, two-component system response regulator QseB	NA|457aa|down_7|LR134142.1_1006854_1008225_+	PRK10337, PRK10337, sensor protein QseC; Provisional	cas3|901aa|down_8|LR134142.1_1008282_1010985_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_9|LR134142.1_1011408_1012944_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_900635545.1_30316_G02	LR134142	Salmonella enterica subsp. enterica serovar Sanjuan strain NCTC7406 genome assembly, chromosome: 1	3	1017382-1020824	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	54,56,56	56	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|457aa|up_9|LR134142.1_1006854_1008225_+	PRK10337, PRK10337, sensor protein QseC; Provisional	cas3|901aa|up_8|LR134142.1_1008282_1010985_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_7|LR134142.1_1011408_1012944_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_6|LR134142.1_1012960_1013563_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_5|LR134142.1_1013585_1014644_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_4|LR134142.1_1014653_1015379_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_3|LR134142.1_1015378_1016083_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|141aa|up_2|LR134142.1_1016082_1016505_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas1|162aa|up_1|LR134142.1_1016515_1017001_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|LR134142.1_1017003_1017288_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|LR134142.1_1020838_1021885_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134142.1_1022134_1023043_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|LR134142.1_1023052_1024492_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134142.1_1024478_1025084_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134142.1_1025134_1025458_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134142.1_1025648_1025960_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|187aa|down_6|LR134142.1_1026127_1026688_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134142.1_1026687_1027167_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134142.1_1027163_1028213_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134142.1_1028193_1028955_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900635545.1_30316_G02	LR134142	Salmonella enterica subsp. enterica serovar Sanjuan strain NCTC7406 genome assembly, chromosome: 1	4	1825368-1825465	4	CRISPRCasFinder	no	DEDDh	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Unclear	GCGCTCGCGAATTTCCTCGGCGCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|156aa|up_9|LR134142.1_1818291_1818759_+	PRK10016, PRK10016, DNA gyrase inhibitor SbmC	NA|353aa|up_8|LR134142.1_1818877_1819936_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|112aa|up_7|LR134142.1_1820180_1820516_+	PRK05423, PRK05423, DUF496 family protein	NA|301aa|up_6|LR134142.1_1820549_1821452_-	COG4542, PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|137aa|up_5|LR134142.1_1821509_1821920_-	PRK12397, PRK12397, acetate/propionate family kinase	NA|282aa|up_4|LR134142.1_1821879_1822725_-	PRK12397, PRK12397, acetate/propionate family kinase	NA|151aa|up_3|LR134142.1_1822709_1823162_-	pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation	NA|117aa|up_2|LR134142.1_1823166_1823517_-	COG4810, EutS, Ethanolamine utilization protein [Amino acid transport and metabolism]	NA|169aa|up_1|LR134142.1_1823563_1824070_-	COG4577, CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion]	NA|404aa|up_0|LR134142.1_1824072_1825284_-	COG4656, RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]	NA|246aa|down_0|LR134142.1_1825797_1826535_-	cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism	NA|238aa|down_1|LR134142.1_1826546_1827260_-	PRK15398, PRK15398, aldehyde dehydrogenase	NA|228aa|down_2|LR134142.1_1827256_1827940_-	PRK15398, PRK15398, aldehyde dehydrogenase	NA|337aa|down_3|LR134142.1_1827936_1828947_-	COG2096, COG2096, cob(I)alamin adenosyltransferase [Coenzyme transport and    metabolism]	NA|92aa|down_4|LR134142.1_1828956_1829232_-	COG4576, CcmL, Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion]	NA|164aa|down_5|LR134142.1_1829235_1829727_-	PRK15428, PRK15428, putative propanediol utilization protein PduM; Provisional	NA|211aa|down_6|LR134142.1_1829723_1830356_-	PRK15070, PRK15070, phosphate propanoyltransferase	NA|154aa|down_7|LR134142.1_1830355_1830817_-	COG4577, CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion]	NA|92aa|down_8|LR134142.1_1830841_1831117_-	COG4577, CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion]	NA|117aa|down_9|LR134142.1_1831135_1831486_-	pfam02288, Dehydratase_MU, Dehydratase medium subunit
