The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	111422	117724	4776492		Enterobacteria_phage(42.86%)	7	NA	NA
VEA28926.1|111422_111953_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	57.1	3.7e-52
VEA28927.1|111957_112200_-	glucose-1-phosphate thymidylyltransferase	NA	A0A1D7XFC1	Escherichia_phage	51.9	1.7e-17
VEA28928.1|112299_112776_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	63.9	1.0e-53
VEA28929.1|112888_113788_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
VEA28930.1|113787_114873_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	9.4e-103
VEA28931.1|115249_116143_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
VEA28932.1|116320_117724_-	Colanic acid biosynthesis protein wcaM	NA	A0A291LBB9	Klebsiella_phage	26.3	3.1e-21
>prophage 2
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	184956	194127	4776492	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
VEA28994.1|184956_186990_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
VEA28995.1|187230_187689_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
VEA28996.1|187860_188391_+	lipoprotein	NA	NA	NA	NA	NA
VEA28997.1|188447_188915_-	Protein of uncharacterised function (DUF1456)	NA	Q9EYF4	Enterobacteria_phage	90.3	1.8e-74
VEA28998.1|188961_189681_-	two-component system response regulator	NA	NA	NA	NA	NA
VEA28999.1|189677_191363_-	putative sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	6.2e-279
VEA29000.1|191585_192317_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
VEA29001.1|192376_192484_+	membrane protein	NA	NA	NA	NA	NA
VEA29002.1|192464_193196_-	putative permease transmembrane component	NA	NA	NA	NA	NA
VEA29003.1|193179_194127_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 3
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	866763	874436	4776492		Escherichia_phage(83.33%)	10	NA	NA
VEA29659.1|866763_867402_-	sugar aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.8e-85
VEA29660.1|867398_868007_-	YgbK domain protein	NA	A0A077SLJ7	Escherichia_phage	58.8	9.4e-52
VEA29661.1|868003_868660_-	membrane protein	NA	A0A077SLJ7	Escherichia_phage	63.9	9.8e-71
VEA29662.1|868769_869576_-	oxidoreductase	NA	A0A077SLF7	Escherichia_phage	74.7	4.3e-84
VEA29663.1|869772_870537_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.5	1.1e-70
VEA29664.1|870555_870960_-	Transcriptional regulator hosA	NA	NA	NA	NA	NA
VEA29665.1|871130_871724_+	decarboxylase	NA	NA	NA	NA	NA
VEA29666.1|871723_873151_+	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA	NA
VEA29667.1|873161_873398_+	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA	NA
VEA29668.1|873443_874436_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
>prophage 4
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	1327878	1352707	4776492	protease	uncultured_Mediterranean_phage(50.0%)	30	NA	NA
VEA30633.1|1327878_1328178_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
VEA30636.1|1328568_1329018_-	stringent starvation protein A	NA	NA	NA	NA	NA
VEA30639.1|1329132_1329414_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA30642.1|1329331_1329724_-	30S ribosomal subunit protein S9	NA	NA	NA	NA	NA
VEA30645.1|1329739_1330168_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
VEA30648.1|1330470_1331595_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
VEA30652.1|1331787_1332186_+	cytochrome d ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
VEA30659.1|1332342_1333308_+|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	27.3	1.1e-17
VEA30662.1|1333361_1333709_+|protease	serine protease	protease	NA	NA	NA	NA
VEA30665.1|1333801_1334872_+|protease	serine endoprotease	protease	NA	NA	NA	NA
VEA30667.1|1334905_1335604_-	membrane protein	NA	NA	NA	NA	NA
VEA30670.1|1335656_1336958_-	oxaloacetate decarboxylase subunit beta	NA	NA	NA	NA	NA
VEA30673.1|1336970_1338740_-	oxaloacetate decarboxylase alpha subunit	NA	NA	NA	NA	NA
VEA30676.1|1338756_1339005_-	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA	NA
VEA30679.1|1339162_1339780_-	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA	NA
VEA30683.1|1339779_1340679_-	tartrate dehydratase subunit alpha	NA	NA	NA	NA	NA
VEA30686.1|1340711_1341980_-	possible membrane transport protein	NA	Q6A201	Oenococcus_phage	33.0	1.1e-59
VEA30689.1|1342190_1342856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA30691.1|1342842_1343472_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEA30694.1|1343591_1344530_-	malate dehydrogenase	NA	NA	NA	NA	NA
VEA30697.1|1344944_1345415_+	arginine repressor	NA	NA	NA	NA	NA
VEA30700.1|1345779_1346043_+	membrane protein	NA	NA	NA	NA	NA
VEA30703.1|1346146_1346413_+	membrane protein	NA	NA	NA	NA	NA
VEA30706.1|1346424_1346745_-	putative ribonuclease inhibitor	NA	NA	NA	NA	NA
VEA30709.1|1346915_1348883_-	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA	NA
VEA30712.1|1348968_1349820_-	Fusaric acid resistance protein fusE	NA	NA	NA	NA	NA
VEA30715.1|1349827_1350031_-	electron transfer flavoprotein FixA	NA	NA	NA	NA	NA
VEA30718.1|1350212_1351142_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA30720.1|1351319_1351523_-|protease	protease TldD	protease	NA	NA	NA	NA
VEA30722.1|1351471_1352707_-|protease	protease TldD	protease	NA	NA	NA	NA
>prophage 5
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	1746900	1752712	4776492	capsid	Enterobacteria_phage(100.0%)	9	NA	NA
VEA31884.1|1746900_1747467_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.8	2.5e-59
VEA31887.1|1747482_1747722_-	bacteriophage gene regulatory protein	NA	Q7M294	Enterobacteria_phage	59.3	2.4e-19
VEA31890.1|1747725_1748469_-|capsid	putative phage capsid protein	capsid	NA	NA	NA	NA
VEA31893.1|1748909_1749275_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	73.8	7.9e-30
VEA31896.1|1749819_1750047_+	bacteriophage protein	NA	NA	NA	NA	NA
VEA31899.1|1750043_1750364_+	putative prophage protein	NA	NA	NA	NA	NA
VEA31902.1|1750378_1750882_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	72.7	2.0e-63
VEA31905.1|1750862_1752329_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	86.9	4.5e-233
VEA31908.1|1752325_1752712_+	prophage LambdaSa04, DNA primase, P4 family protein	NA	Q7M2A8	Enterobacteria_phage	90.6	1.2e-63
>prophage 6
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	2032432	2094337	4776492	tRNA,terminase,capsid,plate,holin,tail,portal,integrase	Salmonella_phage(60.98%)	75	2064050:2064096	2094499:2094545
VEA32763.1|2032432_2032870_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
VEA32768.1|2032914_2033856_+	acetyltransferase	NA	NA	NA	NA	NA
VEA32771.1|2033870_2034317_-	Antitoxin HigA	NA	NA	NA	NA	NA
VEA32774.1|2034313_2034625_-	cytoplasmic protein	NA	NA	NA	NA	NA
VEA32777.1|2034710_2035640_-	acetyl esterase	NA	A0A2K9L5W3	Tupanvirus	44.4	4.4e-08
VEA32780.1|2035857_2036169_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA32783.1|2036169_2036460_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA	NA
VEA32786.1|2036506_2037436_-	FdhE protein	NA	NA	NA	NA	NA
VEA32789.1|2037432_2038068_-	formate dehydrogenase-O gamma subunit	NA	NA	NA	NA	NA
VEA32792.1|2038064_2038967_-	formate dehydrogenase-O subunit beta	NA	NA	NA	NA	NA
VEA32795.1|2038979_2039549_-	formate dehydrogenase-O, major subunit	NA	NA	NA	NA	NA
VEA32798.1|2042226_2043063_+	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
VEA32801.1|2043255_2044356_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA32804.1|2044710_2045034_-	Inner membrane protein	NA	NA	NA	NA	NA
VEA32806.1|2045033_2045693_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
VEA32809.1|2045793_2046342_+	putative DNA-binding protein	NA	NA	NA	NA	NA
VEA32812.1|2046430_2046745_-	L-rhamnose mutarotase	NA	NA	NA	NA	NA
VEA32815.1|2046741_2047890_-	Lactaldehyde reductase	NA	NA	NA	NA	NA
VEA32818.1|2048015_2048843_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA	NA
VEA32821.1|2048985_2050245_-	L-rhamnose isomerase	NA	NA	NA	NA	NA
VEA32824.1|2050241_2051711_-	rhamnulokinase	NA	NA	NA	NA	NA
VEA32827.1|2051998_2052835_+	L-rhamnose operon regulatory protein	NA	NA	NA	NA	NA
VEA32830.1|2052987_2053836_+	transcriptional activator RhaR	NA	NA	NA	NA	NA
VEA32833.1|2053832_2054462_-	rhamnose-proton symporter	NA	NA	NA	NA	NA
VEA32837.1|2054458_2054866_-	rhamnose-proton symporter	NA	NA	NA	NA	NA
VEA32840.1|2055035_2055149_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA32843.1|2055496_2056168_+	protein yiiY	NA	NA	NA	NA	NA
VEA32846.1|2056325_2057414_-	integral membrane transport protein	NA	NA	NA	NA	NA
VEA32849.1|2057410_2057632_-	integral membrane transport protein	NA	NA	NA	NA	NA
VEA32852.1|2057624_2058140_-	membrane transport protein	NA	NA	NA	NA	NA
VEA32855.1|2058158_2059142_-	transport system periplasmic binding protein	NA	NA	NA	NA	NA
VEA32857.1|2059470_2060091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
VEA32860.1|2060160_2060850_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
VEA32863.1|2060861_2061257_+	membrane protein	NA	NA	NA	NA	NA
VEA32866.1|2061307_2062681_-	two-component sensor kinase protein	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
VEA32869.1|2062677_2063376_-	two-component response regulatory protein	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
VEA32872.1|2063526_2064027_+	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA	NA
2064050:2064096	attL	GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATC	NA	NA	NA	NA
VEA32875.1|2064211_2065192_-|integrase	Puataive integrase	integrase	S4TP66	Salmonella_phage	97.9	2.4e-182
VEA32878.1|2065261_2065555_-	phage repressor protein c	NA	Q1JS21	Enterobacteria_phage	100.0	4.0e-48
VEA32881.1|2065690_2065963_+	Cox protein	NA	Q1JS20	Enterobacteria_phage	100.0	5.3e-47
VEA32884.1|2065938_2066136_+	Uncharacterised protein	NA	S4TNZ7	Salmonella_phage	98.5	3.6e-29
VEA32887.1|2066132_2066633_+	Replication protein (GpB)	NA	M1SV55	Escherichia_phage	100.0	2.6e-92
VEA32890.1|2066696_2066921_+	8.3 kDa protein in GpA 5'region	NA	S4TP68	Salmonella_phage	100.0	4.7e-33
VEA32891.1|2066920_2067223_+	11.3 kDa protein in GpA 5'region	NA	A0A0F7LCL4	Escherichia_phage	99.0	5.9e-47
VEA32894.1|2067222_2067447_+	C4-type zinc finger protein, DksA/TraR family	NA	S4TRY6	Salmonella_phage	100.0	2.9e-35
VEA32897.1|2067443_2067719_+	gp83	NA	Q858T5	Yersinia_virus	100.0	3.8e-45
VEA32900.1|2067708_2069988_+	replication protein	NA	Q858T4	Yersinia_virus	96.7	0.0e+00
VEA32903.1|2070226_2072710_-	DEAD-like helicases superfamily	NA	NA	NA	NA	NA
VEA32906.1|2073089_2074136_-|portal	phage portal pbsx family protein	portal	S4TNX7	Salmonella_phage	99.4	4.4e-190
VEA32909.1|2074135_2075905_-|terminase	Phage terminase ATPase subunit	terminase	S4TT96	Salmonella_phage	99.3	0.0e+00
VEA32912.1|2076070_2076925_+	phage protein V	NA	Q01088	Escherichia_phage	94.4	1.8e-149
VEA32915.1|2077001_2078069_+|capsid	Phage major capsid protein	capsid	A0A0M4R4W2	Salmonella_phage	99.4	2.6e-198
VEA32918.1|2078072_2078822_+|terminase	terminase, endonuclease subunit	terminase	Q6K1I5	Salmonella_virus	97.2	9.9e-128
VEA32921.1|2078915_2079422_+|capsid	capsid completion protein	capsid	S4TNY1	Salmonella_phage	100.0	1.3e-91
VEA32924.1|2079436_2079625_+|tail	phage tail protein	tail	A0A0M3ULF4	Salmonella_phage	100.0	1.5e-29
VEA32927.1|2079628_2079925_+|holin	phage holin protein	holin	S4TP56	Salmonella_phage	100.0	4.4e-47
VEA32930.1|2079911_2080409_+	phage lysozyme gene	NA	S4TUB1	Salmonella_phage	99.4	1.2e-92
VEA32934.1|2080405_2080819_+	lysozyme	NA	S4TRW3	Salmonella_phage	100.0	2.6e-45
VEA32937.1|2080805_2080964_+	Phage outer membrane lipoprotein Rz1	NA	S4TNY4	Salmonella_phage	100.0	2.6e-22
VEA32940.1|2080926_2081394_+|tail	tail fiber protein	tail	S4TTA5	Salmonella_phage	99.4	7.2e-84
VEA32943.1|2081386_2081836_+|tail	tail completion protein S	tail	O80313	Escherichia_phage	94.6	1.6e-69
VEA32946.1|2081904_2082546_+|tail	phage tail protein	tail	Q6K1H6	Salmonella_virus	96.2	2.5e-111
VEA32949.1|2082542_2082890_+|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	98.3	9.4e-57
VEA32952.1|2082896_2083805_+|plate	baseplate assembly protein	plate	S4TNY7	Salmonella_phage	99.3	2.8e-161
VEA32955.1|2083797_2084328_+|tail	orf38; p2 I-like tail protein	tail	S4TTA8	Salmonella_phage	99.4	3.5e-103
VEA32956.1|2084338_2086450_+|tail	phage variable tail-fiber protein	tail	Q8HAB4	Salmonella_phage	86.3	1.6e-215
VEA32959.1|2086449_2087040_+|tail	phage tail-fiber asembly protein	tail	A0A1B0VCD0	Salmonella_phage	88.2	5.3e-100
VEA32962.1|2087208_2088396_+|tail	bacteriophage major tail sheath protein FI	tail	Q6K1H0	Salmonella_virus	99.5	2.9e-222
VEA32965.1|2088411_2088930_+|tail	major tail sheath protein FII	tail	S4TNZ0	Salmonella_phage	100.0	6.5e-94
VEA32968.1|2088992_2089328_+|tail	phage tail protein	tail	S4TTB2	Salmonella_phage	100.0	1.4e-52
VEA32971.1|2089472_2091917_+|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	99.6	0.0e+00
VEA32974.1|2091931_2092417_+	gp25	NA	Q6K1G5	Salmonella_virus	99.4	6.7e-85
VEA32976.1|2092413_2093583_+	phage late control gene D	NA	S4TRX8	Salmonella_phage	96.9	2.3e-208
VEA32979.1|2093660_2093879_+	DNA-binding transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
VEA32981.1|2093929_2094337_-	Uncharacterised protein	NA	S4TTB4	Salmonella_phage	98.5	5.1e-70
2094499:2094545	attR	GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATC	NA	NA	NA	NA
>prophage 7
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	2497748	2501093	4776492		Vibrio_phage(42.86%)	8	NA	NA
VEA34123.1|2497748_2497991_+	bifunctional antitoxin/transcriptional repressor RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	51.2	5.6e-16
VEA34126.1|2497980_2498265_+	RelE toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	70.2	8.6e-32
VEA34129.1|2498268_2498733_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	K4F9T1	Cronobacter_phage	55.8	2.7e-51
VEA34133.1|2498949_2499531_-	Anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	74.9	6.2e-85
VEA34136.1|2499469_2499727_-	Anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7RVS1	Vibrio_phage	60.0	1.5e-14
VEA34139.1|2499879_2500401_-	Anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	67.7	9.9e-42
VEA34142.1|2500477_2500768_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA34145.1|2500745_2501093_-	Anaerobic ribonucleoside-triphosphate reductase	NA	A0A2H4YEI7	Aeromonas_phage	39.8	4.1e-12
>prophage 8
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	3642672	3653022	4776492	tRNA	Escherichia_phage(50.0%)	7	NA	NA
VEA37627.1|3642672_3646053_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.4e-88
VEA37631.1|3646195_3646807_+	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEA37634.1|3646816_3648160_+	Holliday junction DNA helicase	NA	G3MBE0	Bacillus_virus	40.9	1.3e-80
VEA37637.1|3648418_3649711_+|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.5	8.6e-95
VEA37640.1|3649948_3651781_+	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.1	2.4e-159
VEA37643.1|3651917_3652394_+	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	52.8	3.7e-43
VEA37646.1|3652404_3653022_+	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
>prophage 9
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	3696113	3777399	4776492	tRNA,terminase,transposase,protease,capsid,head,holin,tail,portal	Salmonella_phage(43.64%)	91	NA	NA
VEA37753.1|3696113_3697514_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
VEA37755.1|3697682_3698003_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
VEA37757.1|3697989_3698886_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
VEA37759.1|3699080_3700373_-	Integrase	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
VEA37761.1|3700417_3700666_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
VEA37763.1|3700706_3700946_-	putative bacteriophage protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
VEA37765.1|3700988_3702098_-	Gifsy-2 prophage RecT	NA	H6WRX0	Salmonella_phage	100.0	7.1e-207
VEA37767.1|3702108_3705036_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	98.9	0.0e+00
VEA37769.1|3705162_3705450_-	Gifsy-1 prophage protein	NA	H6WRX2	Salmonella_phage	98.9	8.6e-48
VEA37771.1|3705534_3705693_-	DNA breaking-rejoining protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
VEA37773.1|3705995_3706406_-	regulatory protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
VEA37775.1|3706525_3706765_+	phage regulatory protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
VEA37777.1|3706784_3707105_+	repressor	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
VEA37779.1|3707196_3708174_+	regulatory protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
VEA37781.1|3708176_3708926_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
VEA37783.1|3708936_3709284_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
VEA37785.1|3709280_3709592_+	prophage protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
VEA37787.1|3709690_3709960_+	putative prophage protein	NA	NA	NA	NA	NA
VEA37789.1|3710251_3710485_+	Gifsy-1 prophage DinI	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
VEA37791.1|3710900_3711503_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
VEA37793.1|3711502_3711709_+	Phage protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
VEA37796.1|3711711_3712323_+	bacteriophage Lambda NinG protein	NA	A0A0M4RU10	Salmonella_phage	99.5	4.2e-92
VEA37798.1|3712455_3713253_+	molecular chaperone	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
VEA37800.1|3713809_3713935_+	Gifsy-2 prophage protein	NA	NA	NA	NA	NA
VEA37802.1|3714070_3714520_-	Gifsy-2 prophage protein	NA	NA	NA	NA	NA
VEA37804.1|3714736_3714874_+|holin	holin	holin	NA	NA	NA	NA
VEA37806.1|3714880_3715354_-	GogA	NA	Q9MBM0	Phage_Gifsy-2	100.0	9.1e-87
VEA37808.1|3715836_3716172_+|holin	bacteriophage holin	holin	A0A0M3ULK9	Salmonella_phage	100.0	4.1e-57
VEA37810.1|3716155_3716608_+	Lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.4e-79
VEA37812.1|3716604_3717072_+	putative endopeptidase	NA	A0A0M4RD57	Salmonella_phage	90.2	7.7e-70
VEA37814.1|3717308_3717710_-	Inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
VEA37816.1|3717996_3718542_+|terminase	terminase	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
VEA37818.1|3718513_3720445_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
VEA37820.1|3720428_3720632_+|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
VEA37822.1|3720589_3722209_+|portal	phage portal protein, lambda family	portal	K7P6U7	Enterobacteria_phage	62.8	9.8e-189
VEA37824.1|3722198_3723695_+	scaffold protein	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
VEA37826.1|3723707_3724055_+	Head decoration protein	NA	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
VEA37828.1|3724109_3724835_+|capsid	phage major capsid protein E	capsid	A0A2I6TCE5	Escherichia_phage	60.3	1.2e-74
VEA37830.1|3724824_3725139_+|capsid	phage major capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	58.3	9.8e-29
VEA37832.1|3725202_3725577_+	DNA packaging protein	NA	A0A2R9YJP4	Escherichia_phage	34.9	4.8e-06
VEA37834.1|3725587_3725944_+|tail	tail attachment protein	tail	K7P6U9	Enterobacteria_phage	58.5	1.8e-31
VEA37837.1|3725953_3726553_+|tail	prophage minor tail protein Z	tail	A0A291AWZ0	Escherichia_phage	68.7	8.3e-69
VEA37839.1|3726552_3726954_+|tail	phage minor tail protein U	tail	A0A291AWY2	Escherichia_phage	59.8	8.1e-44
VEA37841.1|3726966_3727719_+|tail	major tail protein	tail	A5LH35	Enterobacteria_phage	70.0	1.9e-94
VEA37843.1|3727767_3728157_+|tail	minor tail protein	tail	A5LH36	Enterobacteria_phage	58.9	1.5e-31
VEA37845.1|3728219_3728480_+|tail	minor tail-like protein	tail	A5LH37	Enterobacteria_phage	55.3	1.7e-18
VEA37847.1|3728463_3731556_+	gifsy-1 prophage VmtH	NA	A0A291AWX1	Escherichia_phage	57.7	2.6e-270
VEA37850.1|3731552_3731885_+|tail	tail protein	tail	A5LH39	Enterobacteria_phage	61.5	4.4e-35
VEA37852.1|3731983_3732481_+	attachment/invasion protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
VEA37855.1|3732597_3733131_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
VEA37858.1|3733220_3733916_+|tail	tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.0e-89
VEA37860.1|3733925_3734663_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	75.6	1.8e-113
VEA37862.1|3734722_3735265_+|tail	Gifsy-2 prophage probable tail assembly protein	tail	K7PH50	Enterobacteria_phage	63.8	1.6e-47
VEA37864.1|3735336_3738687_+	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	69.3	0.0e+00
VEA37866.1|3738725_3738968_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA37868.1|3741714_3742128_+|tail	bacteriophage tail protein	tail	A0A0U2QV64	Escherichia_phage	60.2	6.4e-28
VEA37870.1|3742502_3742733_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA37872.1|3743349_3744324_+	Fis family transcriptional regulator	NA	Q9MBL9	Phage_Gifsy-2	98.3	5.4e-174
VEA37874.1|3744391_3744664_+|transposase	transposase (remnant)	transposase	A0A0P0ZBS5	Stx2-converting_phage	62.8	3.4e-09
VEA37876.1|3744795_3745422_-	Uncharacterised ACR, COG2135	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	64.8	2.4e-66
VEA37878.1|3745875_3746469_-	gifsy-2 prophage protein	NA	NA	NA	NA	NA
VEA37880.1|3746739_3746931_-	Gifsy-2 prophage MsgA	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
VEA37882.1|3747357_3749970_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	6.3e-20
VEA37884.1|3750177_3751188_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
VEA37886.1|3751354_3751897_+	Z-ring-associated protein C	NA	NA	NA	NA	NA
VEA37888.1|3751893_3753003_-	Flavodoxin reductases (ferredoxin-NADPHreductases) family 1	NA	NA	NA	NA	NA
VEA37890.1|3753101_3755210_+	23S rRNA (guanine-N-2-) -methyl transferase rlmL	NA	NA	NA	NA	NA
VEA37892.1|3755222_3757130_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
VEA37894.1|3757144_3758398_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
VEA37896.1|3758402_3760043_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
VEA37898.1|3760039_3760603_+	lipoprotein	NA	NA	NA	NA	NA
VEA37900.1|3761125_3761644_-	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA	NA
VEA37902.1|3761712_3763473_-|protease	protease	protease	NA	NA	NA	NA
VEA37904.1|3763658_3764111_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
VEA37906.1|3764182_3765235_-	outer membrane protein A	NA	NA	NA	NA	NA
VEA37909.1|3765591_3766101_-	cell division inhibitor	NA	NA	NA	NA	NA
VEA37913.1|3766317_3766923_+	DNA transformation protein TfoX	NA	NA	NA	NA	NA
VEA37916.1|3766909_3768337_-	Putative efflux (PET) family inner membrane protein YccS	NA	NA	NA	NA	NA
VEA37919.1|3768317_3769064_-	Putative efflux (PET) family inner membrane protein YccS	NA	NA	NA	NA	NA
VEA37922.1|3769082_3769529_-	Inner membrane protein YccF	NA	NA	NA	NA	NA
VEA37925.1|3769652_3771707_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
VEA37928.1|3771742_3772201_-	methylglyoxal synthase	NA	NA	NA	NA	NA
VEA37931.1|3772295_3772958_-	UPF0319 protein YccT precursor	NA	NA	NA	NA	NA
VEA37934.1|3773131_3773545_+	Succinyl-CoA synthetase alpha subunit-related enzyme	NA	NA	NA	NA	NA
VEA37937.1|3773589_3773907_-	hemimethylated DNA binding protein YccV	NA	NA	NA	NA	NA
VEA37940.1|3773964_3774222_-	LSU m5C1962 methyl transferase RlmI	NA	NA	NA	NA	NA
VEA37943.1|3774221_3775175_-	LSU m5C1962 methyl transferase RlmI	NA	NA	NA	NA	NA
VEA37946.1|3775389_3775938_+	kinase inhibitor	NA	NA	NA	NA	NA
VEA37949.1|3775954_3776743_+	transcriptional regulator	NA	NA	NA	NA	NA
VEA37952.1|3776791_3777073_+	acylphosphatase	NA	NA	NA	NA	NA
VEA37955.1|3777069_3777399_-|tRNA	tRNA 2-thiouridine synthesizing protein E	tRNA	NA	NA	NA	NA
>prophage 10
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	3932240	3940510	4776492	transposase	Escherichia_phage(42.86%)	9	NA	NA
VEA38448.1|3932240_3933491_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
VEA38451.1|3933938_3935063_+	bacteriophage protein	NA	NA	NA	NA	NA
VEA38455.1|3936107_3936521_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	3.2e-19
VEA38458.1|3936537_3937266_+	Pertussis toxin, subunit 1 subfamily	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
VEA38461.1|3937449_3937992_+	Predicted lysozyme (DUF847)	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
VEA38464.1|3938139_3938517_-	Protein of uncharacterised function (DUF1353)	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
VEA38467.1|3938589_3939399_-	cytolethal distending toxin subunit CdtB	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
VEA38470.1|3939895_3940060_+|transposase	transposase	transposase	NA	NA	NA	NA
VEA38473.1|3940270_3940510_-	virulence protein	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 11
LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	4776492	4553243	4606622	4776492	transposase,terminase,protease,tail,integrase	Enterobacteria_phage(31.25%)	58	4547795:4547809	4606923:4606937
4547795:4547809	attL	GTGAGCGGCTGTAAA	NA	NA	NA	NA
VEA40330.1|4553243_4553939_-|protease	metal-dependent protease-like protein, putative molecular chaperone	protease	NA	NA	NA	NA
VEA40333.1|4553996_4555907_-	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	32.7	5.9e-92
VEA40336.1|4556038_4556383_+	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA	NA
VEA40339.1|4556388_4556568_-	conserved domain protein	NA	NA	NA	NA	NA
VEA40342.1|4556648_4558013_+	para-aminobenzoate synthase component I	NA	A0A0B5J984	Pandoravirus	35.0	3.6e-43
VEA40345.1|4558016_4558595_+	putative nudix hydrolase YeaB	NA	NA	NA	NA	NA
VEA40347.1|4558858_4560223_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
VEA40350.1|4560360_4561962_+	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA	NA
VEA40354.1|4561983_4563543_-	Magnesium and cobalt efflux protein CorC	NA	A0A0R6PEZ3	Moraxella_phage	44.4	9.5e-40
VEA40357.1|4564015_4564984_+	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA	NA
VEA40360.1|4565036_4565837_+	phosphotransferase enzyme II, C component	NA	NA	NA	NA	NA
VEA40361.1|4565849_4566701_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
VEA40364.1|4566759_4567218_+	membrane protein	NA	NA	NA	NA	NA
VEA40367.1|4567627_4567783_+	membrane protein YebN	NA	NA	NA	NA	NA
VEA40370.1|4567803_4568193_+	membrane protein YebN	NA	NA	NA	NA	NA
VEA40373.1|4568189_4568999_-	23S rRNA methyltransferase A	NA	NA	NA	NA	NA
VEA40376.1|4569064_4570810_-	penicillin-binding protein	NA	NA	NA	NA	NA
VEA40379.1|4572043_4572331_-	putative exported protein	NA	NA	NA	NA	NA
VEA40383.1|4572401_4572545_-	Putative inner membrane protein	NA	NA	NA	NA	NA
VEA40386.1|4572702_4572942_+	putative exported protein	NA	NA	NA	NA	NA
VEA40389.1|4573153_4573945_-	transcriptional regulator KdgR	NA	NA	NA	NA	NA
VEA40392.1|4574120_4575494_+	export protein	NA	NA	NA	NA	NA
VEA40395.1|4575541_4576423_-	heat shock protein	NA	NA	NA	NA	NA
VEA40398.1|4576616_4578665_-|protease	Tail-specific protease precursor	protease	A0A0R6PIZ1	Moraxella_phage	33.5	1.0e-86
VEA40401.1|4578684_4579371_-	ProP effector	NA	NA	NA	NA	NA
VEA40404.1|4579468_4580038_-	GAF domain-containing protein	NA	NA	NA	NA	NA
VEA40407.1|4580094_4581378_+	Paraquat-inducible protein A	NA	NA	NA	NA	NA
VEA40410.1|4581346_4583323_+	mce-related protein	NA	NA	NA	NA	NA
VEA40413.1|4583297_4583981_+	mce-related protein	NA	NA	NA	NA	NA
VEA40416.1|4583956_4585498_+	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA	NA
VEA40419.1|4585611_4585851_+	conserved domain protein	NA	NA	NA	NA	NA
VEA40422.1|4585961_4586153_+	putative secreted protein	NA	NA	NA	NA	NA
VEA40425.1|4586171_4586822_-	Serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	50.9	3.2e-58
VEA40428.1|4586839_4587073_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA40431.1|4587045_4587210_-	membrane protein	NA	NA	NA	NA	NA
VEA40434.1|4587494_4588217_-	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
VEA40436.1|4588900_4589296_+	protein ycgX	NA	C6ZCX4	Enterobacteria_phage	32.8	1.2e-15
VEA40439.1|4589625_4590102_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA40442.1|4590489_4590909_-	acetyltransferase	NA	NA	NA	NA	NA
VEA40445.1|4591998_4592337_-|transposase	transposase	transposase	NA	NA	NA	NA
VEA40448.1|4592299_4592716_-|transposase	transposase, Mutator family protein	transposase	I6RSM4	Salmonella_phage	87.7	1.5e-21
VEA40452.1|4594047_4594962_+	drug/metabolite transporter DMT permease	NA	NA	NA	NA	NA
VEA40455.1|4595094_4595253_+	membrane protein	NA	NA	NA	NA	NA
VEA40458.1|4595262_4595877_+	disulfide bond formation protein	NA	NA	NA	NA	NA
VEA40461.1|4596325_4596448_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA40464.1|4598465_4599152_-|tail	tail protein	tail	A0A0M4QWS3	Salmonella_phage	91.2	1.1e-59
VEA40467.1|4599206_4599935_-	putative Tail Fiber Protein	NA	Q1MVL8	Enterobacteria_phage	42.8	7.8e-45
VEA40470.1|4600062_4600437_-|terminase	phage terminase large subunit	terminase	Q8VNN7	Enterobacteria_phage	83.7	2.6e-60
VEA40473.1|4600456_4600636_-|terminase	phage terminase large subunit	terminase	Q9EYD1	Enterobacteria_phage	53.2	2.7e-07
VEA40476.1|4600622_4601114_-|terminase	terminase	terminase	Q9EYD0	Enterobacteria_phage	55.6	3.5e-41
VEA40479.1|4601420_4601588_+	lytic enzyme	NA	NA	NA	NA	NA
VEA40482.1|4601844_4602378_-	exported phage protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
VEA40484.1|4602527_4603346_+	exodeoxyribonuclease 8	NA	A0A0U2I1R6	Escherichia_phage	68.8	1.2e-28
VEA40487.1|4603518_4604259_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.2	4.6e-61
VEA40490.1|4604633_4604987_-	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA	NA
VEA40493.1|4605003_4605879_-	membrane protein	NA	NA	NA	NA	NA
VEA40496.1|4605879_4606254_-	Copper resistance protein CopC	NA	NA	NA	NA	NA
VEA40499.1|4606391_4606622_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
4606923:4606937	attR	TTTACAGCCGCTCAC	NA	NA	NA	NA
