assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635615.1_31340_G01	LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	1	884559-888373	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	62,62,52	62	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	NA,NA	NA|254aa|up_9|LR134147.1_876427_877189_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|LR134147.1_877169_878219_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|LR134147.1_878215_878695_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|LR134147.1_878694_879405_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|LR134147.1_879423_879735_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|LR134147.1_879926_880250_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|LR134147.1_880300_880906_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|LR134147.1_880892_882332_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|LR134147.1_882341_883250_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|LR134147.1_883500_884547_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|LR134147.1_888457_888751_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|LR134147.1_888753_889671_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|LR134147.1_889723_890374_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|LR134147.1_890373_891099_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|LR134147.1_891108_892167_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|LR134147.1_892189_892792_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|LR134147.1_892808_894344_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|LR134147.1_894700_897400_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|down_8|LR134147.1_897783_898737_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|LR134147.1_898824_899559_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_900635615.1_31340_G01	LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	2	904935-906061	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACA	29,29,28	0	0	NA	NA	I-E:I-E:I-E	18,18,17	18	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	NA,NA	cas7|353aa|up_9|LR134147.1_891108_892167_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|up_8|LR134147.1_892189_892792_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|up_7|LR134147.1_892808_894344_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|LR134147.1_894700_897400_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|up_5|LR134147.1_897783_898737_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|LR134147.1_898824_899559_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|LR134147.1_899634_901347_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|LR134147.1_901346_903146_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|LR134147.1_903581_903944_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|235aa|up_0|LR134147.1_904132_904837_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|LR134147.1_906357_907029_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|LR134147.1_907164_908463_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|LR134147.1_908545_910183_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|LR134147.1_910410_911211_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|96aa|down_4|LR134147.1_912242_912530_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_5|LR134147.1_912683_914918_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_6|LR134147.1_914969_916265_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_7|LR134147.1_916322_919079_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_8|LR134147.1_919122_920265_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|98aa|down_9|LR134147.1_920342_920636_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCA_900635615.1_31340_G01	LR134147	Salmonella enterica subsp. enterica strain NCTC7831 genome assembly, chromosome: 1	3	1663289-1663367	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	Orphan	CATTACCACCAGGCTGATATCAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	NA,NA|70aa|down_8|LR134147.1_1674590_1674800_-	NA|311aa|up_9|LR134147.1_1652478_1653411_+	pfam16154, DUF4862, Domain of unknown function (DUF4862)	NA|158aa|up_8|LR134147.1_1653549_1654023_+	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|426aa|up_7|LR134147.1_1654025_1655303_+	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|329aa|up_6|LR134147.1_1655314_1656301_+	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|499aa|up_5|LR134147.1_1656304_1657801_+	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|217aa|up_4|LR134147.1_1657797_1658448_+	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|287aa|up_3|LR134147.1_1658452_1659313_+	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|232aa|up_2|LR134147.1_1659306_1660002_+	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|272aa|up_1|LR134147.1_1660150_1660966_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|652aa|up_0|LR134147.1_1661229_1663185_+	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|513aa|down_0|LR134147.1_1663414_1664953_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|294aa|down_1|LR134147.1_1665121_1666003_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|617aa|down_2|LR134147.1_1666287_1668138_-	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|464aa|down_3|LR134147.1_1668134_1669526_-	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|203aa|down_4|LR134147.1_1669624_1670233_-	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|639aa|down_5|LR134147.1_1670708_1672625_+	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|383aa|down_6|LR134147.1_1672845_1673994_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|197aa|down_7|LR134147.1_1673990_1674581_+	PRK11001, mtlR, MltR family transcriptional regulator	NA|70aa|down_8|LR134147.1_1674590_1674800_-	NA	NA|54aa|down_9|LR134147.1_1675290_1675452_+	PRK11020, PRK11020, YibL family ribosome-associated protein
