The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	1024666	1037657	4692996	tRNA	Escherichia_phage(50.0%)	12	NA	NA
VEA50497.1|1024666_1025236_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.9	7.5e-51
VEA50498.1|1025229_1025856_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
VEA50499.1|1025995_1027135_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
VEA50500.1|1027197_1028190_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
VEA50501.1|1028283_1029648_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
VEA50502.1|1029736_1030513_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
VEA50503.1|1030517_1031156_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
VEA50504.1|1031152_1032415_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
VEA50505.1|1032411_1033320_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.5	3.0e-118
VEA50506.1|1033515_1034283_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
VEA50507.1|1034333_1034990_-	serine/threonine-specific protein phosphatase 2	NA	A0A222YWF0	Escherichia_phage	46.3	6.2e-49
VEA50508.1|1035095_1037657_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 2
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	1088877	1094171	4692996		Bacillus_virus(16.67%)	6	NA	NA
VEA50563.1|1088877_1090080_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.4	4.9e-28
VEA50564.1|1090433_1090886_-	ribonucleoside-diphosphate reductase 2 beta chain	NA	A0A0N7CCA3	Skermania_phage	73.3	1.7e-58
VEA50565.1|1090858_1091392_-	ribonucleoside-diphosphate reductase 2 beta chain	NA	R4TBI6	Mycobacterium_phage	71.2	1.0e-62
VEA50566.1|1091401_1093546_-	ribonucleoside-diphosphate reductase 2 alpha chain	NA	A8E2R1	Enterococcus_phage	48.5	1.7e-196
VEA50567.1|1093518_1093929_-	ribonucleotide reductase stimulatory protein	NA	A0A142F1R4	Bacillus_phage	44.4	4.6e-18
VEA50568.1|1093925_1094171_-	glutaredoxin-like protein	NA	Q5K5J3	Oenococcus_phage	35.3	1.8e-06
>prophage 3
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	1666513	1675960	4692996		Enterobacteria_phage(85.71%)	11	NA	NA
VEA51529.1|1666513_1667440_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
VEA51531.1|1667444_1668176_+	ABC transporter permease	NA	NA	NA	NA	NA
VEA51533.1|1668156_1668264_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEA51535.1|1668323_1669055_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	98.5	8.2e-111
VEA51537.1|1669276_1670962_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VEA51539.1|1670958_1671210_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VEA51541.1|1671160_1671679_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VEA51543.1|1671725_1672196_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
VEA51545.1|1672236_1672698_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
VEA51547.1|1672822_1674826_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	97.2	0.0e+00
VEA51549.1|1674943_1675960_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.5	3.7e-125
>prophage 4
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	1802032	1842179	4692996	head,integrase,lysis,coat,terminase,portal	Enterobacteria_phage(43.1%)	63	1795016:1795029	1805104:1805117
1795016:1795029	attL	TGATGGTGATGATG	NA	NA	NA	NA
VEA51765.1|1802032_1802764_+|integrase	integrase	integrase	A0A0P0ZCE7	Stx2-converting_phage	100.0	9.7e-136
VEA51767.1|1802831_1803212_+|integrase	integrase	integrase	A0A0P0ZDN8	Stx2-converting_phage	100.0	1.6e-70
VEA51769.1|1803192_1803384_-	transcriptional regulator, AlpA family	NA	A0A0P0ZBL0	Stx2-converting_phage	100.0	1.7e-31
VEA51771.1|1803461_1803806_-	prophage protein	NA	K7PJY7	Enterobacterial_phage	100.0	5.3e-60
VEA51773.1|1803832_1804000_-	Uncharacterised protein	NA	A5VWB7	Enterobacteria_phage	100.0	9.8e-28
VEA51775.1|1804088_1804370_-	ea8.5	NA	NA	NA	NA	NA
VEA51777.1|1804484_1804859_-	prophage protein	NA	K7PK20	Enterobacteria_phage	64.1	4.3e-39
VEA51779.1|1804918_1805206_-	putative EA22-like protein	NA	K7PKG8	Enterobacteria_phage	94.0	5.1e-40
1805104:1805117	attR	CATCATCACCATCA	NA	NA	NA	NA
VEA51781.1|1805207_1805507_-	phage-like protein	NA	A5VWB2	Enterobacteria_phage	94.9	1.2e-55
VEA51783.1|1805503_1806049_-	Uncharacterised protein	NA	J9Q748	Salmonella_phage	84.4	4.4e-85
VEA51785.1|1806045_1806213_-	prophage protein	NA	K7PJY9	Enterobacterial_phage	100.0	1.3e-24
VEA51787.1|1806223_1806517_-	Anti-RecBCD protein 2	NA	K7P845	Enterobacteria_phage	99.0	2.5e-50
VEA51789.1|1806540_1806924_-	bacteriophage HK97 gp40	NA	A0A2I6PID1	Escherichia_phage	100.0	3.8e-67
VEA51791.1|1806923_1807529_-	DNA single-strand annealing protein; essential recombination function protein Erf	NA	K7P6W7	Enterobacteria_phage	100.0	4.1e-108
VEA51793.1|1807539_1807710_-	Uncharacterised protein	NA	K7PJW0	Enterobacteria_phage	98.2	1.1e-23
VEA51795.1|1807785_1807938_-	putative host killing protein	NA	A5VWA5	Enterobacteria_phage	100.0	4.7e-21
VEA51797.1|1807922_1808057_-	prophage regulatory protein cIII	NA	K7PHK2	Enterobacteria_phage	100.0	3.1e-16
VEA51799.1|1808132_1808444_-	superinfection exclusion protein	NA	A0A0N7BTN9	Escherichia_phage	98.1	4.6e-55
VEA51801.1|1808619_1808820_-	restriction alleviation protein	NA	A0A0K2FJE6	Enterobacteria_phage	98.5	4.2e-33
VEA51803.1|1809095_1809524_+	putative coiled-coil protein from phage origin	NA	K7P861	Enterobacteria_phage	97.9	5.8e-72
VEA51805.1|1809516_1809840_-	prophage protein	NA	A4KWR8	Enterobacteria_phage	99.1	6.5e-52
VEA51807.1|1810159_1810456_-	Uncharacterised protein	NA	K7PL18	Enterobacteria_phage	98.0	4.0e-48
VEA51809.1|1810470_1811040_-	bacteriophage repressor protein CI-like protein	NA	K7PK07	Enterobacteria_phage	100.0	2.3e-108
VEA51811.1|1811265_1811496_+	putative antirepressor protein Cro	NA	K7PHA1	Enterobacteria_phage	100.0	1.1e-37
VEA51813.1|1811612_1811894_+	transcriptional activator protein	NA	K7PMG0	Enterobacteria_phage	98.9	7.4e-44
VEA51815.1|1811928_1812090_+	prophage protein	NA	Q76H53	Enterobacteria_phage	100.0	1.3e-21
VEA51817.1|1812076_1812967_+	replication protein O	NA	Q716D3	Shigella_phage	100.0	4.4e-159
VEA51819.1|1812956_1814393_+	P protein; replicative DNA helicase	NA	A0A0N7C224	Escherichia_phage	99.8	7.9e-275
VEA51821.1|1814689_1814812_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA51822.1|1814855_1815002_+	Uncharacterised protein	NA	A0A291LAF5	Escherichia_phage	72.9	5.8e-16
VEA51824.1|1815004_1815415_+	ninB protein	NA	A0A0P0ZCW6	Stx2-converting_phage	97.1	1.1e-69
VEA51826.1|1815608_1816445_+	Uncharacterised protein	NA	A0A2I7RWZ3	Vibrio_phage	54.0	7.3e-87
VEA51828.1|1816455_1816674_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA51830.1|1816673_1816853_+	NinF protein	NA	A0A0M4S6T3	Salmonella_phage	64.2	9.2e-16
VEA51832.1|1817108_1817471_+	prophage holliday junction resolvase	NA	K7PKF0	Enterobacteria_phage	100.0	9.2e-63
VEA51834.1|1817467_1817656_+	prophage protein	NA	K7PH29	Enterobacteria_phage	96.8	4.2e-27
VEA51836.1|1817652_1818276_+	late gene regulator	NA	K7PM87	Enterobacteria_phage	99.5	8.9e-114
VEA51837.1|1818711_1818915_+	Uncharacterised protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
VEA51839.1|1818886_1819390_+	phage lysozome	NA	I6R0P2	Salmonella_phage	99.4	4.5e-92
VEA51841.1|1819386_1819824_+|lysis	bacteriophage lysis protein	lysis	A0A220NRM0	Escherichia_phage	97.2	5.5e-70
VEA51843.1|1819811_1819964_+	bacteriophage protein (Gene 65)	NA	A0A088CQ22	Enterobacteria_phage	100.0	1.2e-21
VEA51845.1|1820170_1820713_+	phage regulatory protein, Rha family	NA	A5VW78	Enterobacteria_phage	100.0	1.4e-99
VEA51847.1|1820940_1821183_+	Protein of uncharacterised function (DUF2560)	NA	A0A0M4R322	Salmonella_phage	100.0	7.5e-37
VEA51849.1|1821184_1821364_+	Uncharacterised protein	NA	Q9AZ02	Salmonella_phage	98.3	8.3e-25
VEA51851.1|1821427_1821667_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA51853.1|1821711_1821924_-	Uncharacterized small protein	NA	NA	NA	NA	NA
VEA51855.1|1821950_1822478_+|terminase	terminase, small subunit	terminase	G0ZND3	Cronobacter_phage	77.4	1.6e-68
VEA51857.1|1822474_1823887_+|terminase	phage terminase large subunit	terminase	Q716H3	Shigella_phage	99.8	4.4e-278
VEA51859.1|1823925_1826016_+|portal	portal protein p19	portal	Q716H2	Shigella_phage	99.6	0.0e+00
VEA51861.1|1826029_1826914_+	scaffold protein	NA	Q716H1	Shigella_phage	100.0	4.7e-145
VEA51863.1|1826925_1828197_+|head,coat	Major head protein (p24) (Major coat protein)	head,coat	Q9AYZ7	Salmonella_phage	99.5	4.3e-240
VEA51865.1|1828239_1828425_+	phage protein	NA	Q716G9	Shigella_phage	98.4	1.7e-25
VEA51867.1|1828399_1828882_+	packaged DNA stabilization protein p27	NA	Q716G8	Shigella_phage	100.0	3.8e-88
VEA51869.1|1828890_1830309_+	Packaged DNA stabilization protein from phage	NA	A0A2D1GM00	Escherichia_phage	99.2	7.1e-276
VEA51871.1|1830308_1831157_+	Tropomyosin	NA	Q716G6	Shigella_phage	98.9	5.6e-103
VEA51873.1|1831156_1831624_+	putative prophage protein	NA	Q2A0B3	Sodalis_phage	74.7	2.2e-64
VEA51875.1|1831610_1832270_+	prophage DNA injection protein	NA	A0A088CPR8	Enterobacteria_phage	64.2	3.3e-58
VEA51877.1|1832282_1833677_+	DNA transfer protein GP20	NA	A0A220NR03	Salmonella_phage	65.2	5.3e-151
VEA51879.1|1833676_1835674_+	DNA transfer protein	NA	Q716G2	Shigella_phage	96.5	0.0e+00
VEA51881.1|1835763_1836024_-	putative transcriptional repressor protein	NA	A0A088CPT2	Enterobacteria_phage	96.5	3.1e-36
VEA51883.1|1836145_1838125_+	Head binding	NA	A5VW57	Enterobacteria_phage	93.5	3.6e-60
VEA51885.1|1838195_1840106_-	acyltransferase	NA	C6ZR20	Salmonella_phage	32.6	4.7e-57
VEA51887.1|1841012_1842179_+	penicillin-binding protein 6B	NA	B6DZZ7	Stx2-converting_phage	98.5	8.0e-225
>prophage 5
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	2248416	2293025	4692996	tail,protease,integrase,lysis,transposase	Escherichia_phage(29.63%)	50	2255991:2256006	2283798:2283813
VEA52676.1|2248416_2249238_-|protease	putative protease	protease	NA	NA	NA	NA
VEA52678.1|2249513_2249822_-	acid shock protein	NA	NA	NA	NA	NA
VEA52680.1|2250245_2251499_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEA52682.1|2251605_2252499_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA52684.1|2252633_2253071_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
VEA52686.1|2253157_2253853_+	transcriptional regulator	NA	NA	NA	NA	NA
VEA52688.1|2253977_2254673_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
VEA52690.1|2254625_2255882_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
2255991:2256006	attL	CTTTAAGAGATAAAAA	NA	NA	NA	NA
VEA52692.1|2256076_2256691_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
VEA52694.1|2256733_2257588_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA	NA
VEA52696.1|2257589_2258207_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
VEA52698.1|2258217_2260614_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.6	4.8e-208
VEA52700.1|2260701_2260851_-	putative dimethyl sulfoxide reductase YnfE	NA	A0A077SK27	Escherichia_phage	64.6	3.7e-10
VEA52702.1|2261003_2263127_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	47.5	8.7e-169
VEA52704.1|2263325_2263631_-	protein	NA	NA	NA	NA	NA
VEA52706.1|2263702_2264449_+	lipoprotein	NA	NA	NA	NA	NA
VEA52708.1|2264451_2265012_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VEA52710.1|2265046_2265388_-	protein	NA	NA	NA	NA	NA
VEA52712.1|2265522_2265849_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
VEA52714.1|2266054_2267269_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	2.4e-46
VEA52716.1|2267280_2267760_+	dehydrogenase	NA	E3SJ82	Synechococcus_phage	31.0	2.0e-09
VEA52718.1|2267844_2268300_+	dehydrogenase	NA	NA	NA	NA	NA
VEA52720.1|2268487_2269768_-|integrase	defective integrase; Qin prophage	integrase	B6DZ48	Enterobacteria_phage	62.1	2.5e-155
VEA52722.1|2269802_2270039_-	putative excisionase	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
VEA52724.1|2270126_2271716_-	Exonuclease RNase T and DNA polymerase III	NA	A0A192Y6E0	Salmonella_phage	56.7	5.5e-59
VEA52726.1|2272345_2272702_+	putative methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
VEA52728.1|2273854_2274034_+	membrane protein	NA	NA	NA	NA	NA
VEA52730.1|2274368_2275682_+|integrase,transposase	putative integrase/transposase	integrase,transposase	NA	NA	NA	NA
VEA52732.1|2276118_2276451_-	Qin prophage protein	NA	NA	NA	NA	NA
VEA52734.1|2276983_2277223_+	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
VEA52736.1|2277222_2277510_+	toxin of the RelE-RelB toxin-antitoxin system	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
VEA52738.1|2277581_2277737_+	putative host cell-killing modulation protein	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
VEA52740.1|2277953_2278205_+	putative prophage protein	NA	NA	NA	NA	NA
VEA52742.1|2278551_2279601_+	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
VEA52744.1|2279614_2280367_+	lambdoid prophage Qin antitermination protein Q-like protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
VEA52746.1|2280788_2281001_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
VEA52748.1|2282118_2282238_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA52750.1|2282279_2282486_+|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.1	4.5e-30
VEA52752.1|2282490_2282802_+	Qin prophage protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
VEA52754.1|2282798_2283332_+	prophage lysozyme (endolysin)	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
VEA52756.1|2283328_2283826_+	Qin prophage protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
2283798:2283813	attR	CTTTAAGAGATAAAAA	NA	NA	NA	NA
VEA52758.1|2285074_2285248_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
VEA52760.1|2285399_2285810_-	Qin prophage	NA	C6ZCX4	Enterobacteria_phage	80.1	1.7e-57
VEA52762.1|2286489_2287035_+	DNA packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.2	9.5e-88
VEA52764.1|2287031_2287319_+|tail	Putative tail component of prophage	tail	A0A291AWT4	Escherichia_phage	98.9	1.4e-42
VEA52766.1|2287315_2287594_+|tail	Prophage tail fiber domain protein	tail	NA	NA	NA	NA
VEA52768.1|2288266_2288857_-	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	39.3	1.5e-25
VEA52770.1|2289173_2289407_-	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
VEA52772.1|2290192_2291476_+	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
VEA52774.1|2291564_2293025_+	putative sugar dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	1.5e-42
>prophage 6
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	2912168	2997039	4692996	tail,protease,integrase,tRNA,transposase	Escherichia_phage(35.71%)	75	2934245:2934262	2991728:2991745
VEA53944.1|2912168_2913569_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
VEA53946.1|2914170_2915259_+	outer membrane protein F	NA	Q1MVN1	Enterobacteria_phage	54.3	1.8e-98
VEA53948.1|2915443_2916634_+	aspartate aminotransferase	NA	NA	NA	NA	NA
VEA53950.1|2916855_2917503_-	metal-binding hydrolase	NA	NA	NA	NA	NA
VEA53952.1|2917529_2918078_-	exported protein YcbK	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	7.0e-06
VEA53954.1|2918258_2920106_-	putative peptidoglycan binding domain-containing protein	NA	NA	NA	NA	NA
VEA53956.1|2920366_2924827_-	chromosome partition protein	NA	NA	NA	NA	NA
VEA53958.1|2924826_2925531_-	condesin subunit E	NA	NA	NA	NA	NA
VEA53960.1|2925511_2926834_-	chromosome partition protein	NA	NA	NA	NA	NA
VEA53962.1|2926830_2927616_-	metallothionein SmtA	NA	NA	NA	NA	NA
VEA53964.1|2927751_2928531_+	inner membrane protein	NA	NA	NA	NA	NA
VEA53966.1|2928507_2929401_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA53968.1|2929554_2930301_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
VEA53970.1|2930297_2930480_-	peroxide and acid resistance protein, UPF0434 family	NA	NA	NA	NA	NA
VEA53972.1|2930531_2931764_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEA53974.1|2931800_2932787_-	tetraacyldisaccharide 4'-kinase (lipid A 4'-kinase)	NA	NA	NA	NA	NA
VEA53976.1|2932783_2934532_-	lipid A export permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	2.5e-57
2934245:2934262	attL	CACCTTTCCTGATACCCA	NA	NA	NA	NA
VEA53978.1|2934568_2936833_-	putative competence-related protein	NA	NA	NA	NA	NA
VEA53980.1|2937039_2937324_-	integration host factor	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
VEA53982.1|2937483_2939157_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
VEA53984.1|2939267_2939951_-	cytidylate kinase	NA	NA	NA	NA	NA
VEA53986.1|2940123_2940888_-	peptidase, M48B family	NA	NA	NA	NA	NA
VEA53988.1|2941056_2942340_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VEA53990.1|2942410_2943499_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
VEA53992.1|2943697_2944390_-	membrane protein YcaP	NA	NA	NA	NA	NA
VEA53994.1|2944519_2946280_+	putative fatty acid binding protein	NA	NA	NA	NA	NA
VEA53996.1|2946685_2947543_+	formate transporter	NA	NA	NA	NA	NA
VEA53998.1|2947597_2949880_+	formate acetyltransferase 1	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
VEA54000.1|2950198_2950417_-	transcriptional activator Ogr/delta	NA	A0A0F7LDQ9	Escherichia_phage	100.0	4.7e-38
VEA54002.1|2950498_2951662_-	phage protein D	NA	U5N3V4	Enterobacteria_phage	99.2	2.7e-204
VEA54004.1|2951661_2952141_-	gpU phage protein	NA	O64315	Escherichia_phage	99.4	1.5e-84
VEA54006.1|2952155_2954603_-|tail	phage tail tape measure protein	tail	Q7Y4C8	Escherichia_virus	92.9	0.0e+00
VEA54008.1|2954747_2955023_-|tail	tail protein E (GpE)	tail	A0A0F7LDQ8	Escherichia_phage	100.0	5.7e-41
VEA54010.1|2955079_2955598_-|tail	phage major tail tube protein FII	tail	A0A0F7LDZ1	Escherichia_phage	100.0	1.4e-93
VEA54012.1|2955610_2956801_-|tail	major tail sheath protein FI	tail	A0A0F7LBW9	Escherichia_phage	99.5	8.1e-225
VEA54014.1|2956860_2957454_-	Resolvase domain-containing protein	NA	A0A0F7LA37	Escherichia_phage	96.4	8.7e-103
VEA54016.1|2957484_2958018_+|tail	putative variable tail fiber protein from prophage (fragment)	tail	Q9MCR6	Enterobacteria_phage	68.5	1.6e-58
VEA54018.1|2958017_2958452_+|tail	e14 prophage tail fiber assembly protein	tail	M1SV83	Escherichia_phage	85.3	6.7e-68
VEA54020.1|2958462_2958840_-|transposase	IS1 transposase	transposase	Q71TF0	Escherichia_phage	100.0	1.3e-67
VEA54022.1|2958884_2959160_-|transposase	IS1 transposase	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
VEA54024.1|2959188_2959503_-	protein	NA	NA	NA	NA	NA
VEA54026.1|2959872_2960823_+	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
VEA54028.1|2960976_2961252_+|transposase	IS1 transposase	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
VEA54030.1|2961667_2961994_-	Uncharacterised protein	NA	A0A218M4H5	Erwinia_phage	75.0	5.2e-33
VEA54032.1|2962429_2962885_-	RNA-binding protein	NA	Q2P9X4	Enterobacteria_phage	96.7	3.6e-80
VEA54034.1|2962881_2965167_-	Replication gene A protein (GpA)	NA	Q858T4	Yersinia_virus	97.4	0.0e+00
VEA54036.1|2965156_2965432_-	relication initiation protein	NA	U5N3W1	Enterobacteria_phage	98.9	3.3e-44
VEA54038.1|2965428_2965653_-	C4-type zinc finger protein, DksA/TraR family	NA	S4TRY6	Salmonella_phage	97.3	1.1e-34
VEA54040.1|2965652_2965955_-	Uncharacterised protein	NA	U5N0U2	Enterobacteria_phage	99.0	1.3e-46
VEA54042.1|2965954_2966179_-	Protein of uncharacterised function (DUF2732)	NA	S4TP68	Salmonella_phage	100.0	4.7e-33
VEA54044.1|2966242_2966743_-	Phage protein B	NA	M1SV55	Escherichia_phage	100.0	2.6e-92
VEA54046.1|2966920_2967277_-	Cox protein	NA	A0A0F7LDH4	Escherichia_phage	99.2	2.4e-63
VEA54048.1|2967444_2967693_+	Phage protein C	NA	Q1JS25	Enterobacteria_phage	100.0	1.2e-42
VEA54050.1|2967786_2968782_+|integrase	integrase	integrase	A0A0F7LBR0	Escherichia_phage	99.7	7.1e-190
VEA54052.1|2968813_2969611_+	pyruvate formate lyase-activating enzyme 1	NA	A0A2P0VNQ0	Tetraselmis_virus	26.6	1.3e-21
VEA54054.1|2969692_2970283_-	NAD(P)H dehydrogenase (quinone)	NA	NA	NA	NA	NA
VEA54056.1|2970382_2971291_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VEA54058.1|2971291_2972722_-	putative amino acid permease	NA	NA	NA	NA	NA
VEA54060.1|2972931_2974080_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEA54062.1|2974393_2975020_+	protein YcaC	NA	NA	NA	NA	NA
VEA54064.1|2975054_2975918_-	anaerobic dimethyl sulfoxide reductase subunit C	NA	NA	NA	NA	NA
VEA54066.1|2975919_2976537_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
VEA54068.1|2976547_2978992_-	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	49.8	6.6e-221
VEA54070.1|2979231_2980524_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
VEA54072.1|2980614_2981958_-	putative ATPase	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
VEA54074.1|2981968_2982580_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEA54076.1|2982738_2986728_-	cell division protein FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
VEA54078.1|2986862_2987357_-	leucine-responsive transcriptional regulator	NA	NA	NA	NA	NA
VEA54080.1|2987901_2988867_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
VEA54082.1|2988989_2990756_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	24.3	7.0e-23
VEA54084.1|2990756_2992478_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	25.4	9.9e-22
2991728:2991745	attR	CACCTTTCCTGATACCCA	NA	NA	NA	NA
VEA54086.1|2992519_2993224_+|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
VEA54088.1|2993508_2993727_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
VEA54090.1|2994411_2996688_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
VEA54092.1|2996718_2997039_-|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
>prophage 7
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	3113224	3134182	4692996	integrase,transposase,lysis,terminase	Enterobacteria_phage(64.0%)	31	3106329:3106343	3142668:3142682
3106329:3106343	attL	CAGGCCATCTTCCAG	NA	NA	NA	NA
VEA54309.1|3113224_3113578_+	IS2 ORF2	NA	Q9ZXG3	Shigella_phage	69.0	2.4e-39
VEA54311.1|3113619_3114363_-	putative AraC-type regulatory protein encoded in prophage CP-933H	NA	NA	NA	NA	NA
VEA54313.1|3116448_3117633_-	Phage protein	NA	K7PHC9	Enterobacteria_phage	71.4	2.3e-38
VEA54315.1|3117634_3118696_-|terminase	terminase GpA	terminase	A0A0K2FJ14	Enterobacteria_phage	98.9	1.7e-213
VEA54316.1|3118670_3119216_-	prophage qsr' DNA packaging protein NU1-like protein	NA	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
VEA54318.1|3119963_3120170_-	DLP12 prophage; predicted protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
VEA54319.1|3120455_3120809_+	putative envelope protein	NA	C6ZCX4	Enterobacteria_phage	98.3	7.1e-60
VEA54320.1|3120819_3121197_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	100.0	1.3e-67
VEA54321.1|3121241_3121517_-|transposase	IS1 transposase	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
VEA54323.1|3121933_3122227_+	lambdoid prophage DLP12 Bor-like protein	NA	K7PL54	Enterobacteria_phage	100.0	4.0e-48
VEA54324.1|3122258_3122720_-	Rz endopeptidase from lambdoid prophage DLP12	NA	A0A0K2FJD0	Enterobacteria_phage	98.7	4.6e-75
VEA54326.1|3122716_3123214_-	phage lysozome	NA	M1FJA0	Enterobacteria_phage	97.6	1.9e-90
VEA54328.1|3123213_3123429_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
VEA54330.1|3124016_3125099_+	outer membrane porin protein NmpC	NA	Q1MVN1	Enterobacteria_phage	76.3	8.9e-154
VEA54332.1|3125287_3125671_-	lambdoid prophage DLP12 antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
VEA54334.1|3125893_3126256_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	96.5	7.3e-60
VEA54336.1|3126252_3126543_-	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	93.8	4.3e-47
VEA54338.1|3126535_3126706_-	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	69.8	2.4e-13
VEA54340.1|3126705_3127161_-	DLP12 prophage; DNA base-flipping protein	NA	I6PD71	Cronobacter_phage	67.5	1.4e-60
VEA54342.1|3127351_3127804_-	17 kDa surface antigen	NA	NA	NA	NA	NA
VEA54344.1|3127800_3128361_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA54346.1|3128617_3128809_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA54348.1|3128995_3129415_+	Bet protein	NA	A0A1I9LJN0	Stx_converting_phage	100.0	3.9e-73
VEA54350.1|3129411_3130092_+	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	99.6	1.0e-131
VEA54352.1|3130088_3130271_+	phage protein	NA	A0A1U8QQC1	Enterobacteria_phage	100.0	1.6e-28
VEA54354.1|3130243_3130435_+	phage protein	NA	A0A0P0ZC67	Stx2-converting_phage	96.8	2.8e-26
VEA54356.1|3130922_3131537_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA54358.1|3131830_3131950_+	phage protein	NA	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	79.5	8.0e-08
VEA54360.1|3132197_3132626_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA54362.1|3132708_3132876_+	Uncharacterised protein	NA	A0A0K2FJ46	Enterobacteria_phage	98.2	1.3e-27
VEA54364.1|3133111_3134182_+|integrase	putative integrase	integrase	K7P6P6	Enterobacteria_phage	99.4	3.3e-201
3142668:3142682	attR	CAGGCCATCTTCCAG	NA	NA	NA	NA
>prophage 8
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	3584847	3678694	4692996	protease,holin,transposase,integrase	Shigella_phage(22.73%)	93	3603781:3603797	3665509:3665525
VEA55159.1|3584847_3586881_-|holin	high-affinity choline transport protein (BCCT-family transporter)	holin	A0A2I7QNT1	Vibrio_phage	27.4	3.4e-21
VEA55161.1|3587009_3587597_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
VEA55163.1|3587610_3589083_+	betaine aldehyde dehydrogenase	NA	NA	NA	NA	NA
VEA55165.1|3589096_3590767_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	4.7e-61
VEA55167.1|3590979_3591648_+	inner membrane protein	NA	NA	NA	NA	NA
VEA55169.1|3591890_3592586_-	transporter	NA	NA	NA	NA	NA
VEA55171.1|3592578_3594006_-	putative electron transport protein YkgF	NA	NA	NA	NA	NA
VEA55173.1|3594016_3594736_-	hydroxyacid oxidoreductase (Fe-S centre)	NA	NA	NA	NA	NA
VEA55175.1|3595262_3596117_-	transcriptional regulator YkgD	NA	NA	NA	NA	NA
VEA55177.1|3596342_3597668_+	putative pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.6	2.5e-113
VEA55179.1|3598024_3598618_+	inner membrane protein	NA	NA	NA	NA	NA
VEA55181.1|3599207_3600059_+	Putatve transcriptional regulator ykgA	NA	NA	NA	NA	NA
VEA55183.1|3600015_3600174_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA55185.1|3600198_3604455_-	Ig domain-containing protein	NA	NA	NA	NA	NA
3603781:3603797	attL	CGGCGATTTTTTCCAGC	NA	NA	NA	NA
VEA55187.1|3605569_3605671_+	small predicted membrane protein	NA	NA	NA	NA	NA
VEA55189.1|3606031_3606298_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
VEA55191.1|3606297_3606438_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
VEA55193.1|3607523_3608066_+	putative fimbrial transcriptional regulator	NA	NA	NA	NA	NA
VEA55195.1|3608140_3608728_+	fimbrillin	NA	NA	NA	NA	NA
VEA55197.1|3608785_3609454_+	putative fimbrial protein	NA	NA	NA	NA	NA
VEA55199.1|3609479_3612005_+	putative fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
VEA55201.1|3611994_3612783_+	putative fimbrial protein	NA	NA	NA	NA	NA
VEA55203.1|3612752_3613499_-|transposase	IS911 transposase orfB	transposase	Q716C2	Shigella_phage	59.0	2.5e-83
VEA55205.1|3614036_3614900_+	putative fimbrial protein	NA	NA	NA	NA	NA
VEA55207.1|3614868_3615579_+	putative fimbrial protein	NA	NA	NA	NA	NA
VEA55209.1|3616468_3617083_-	integral membrane protein	NA	NA	NA	NA	NA
VEA55211.1|3617500_3618190_+	putative xanthine dehydrogenase, iron-sulfur binding subunit	NA	NA	NA	NA	NA
VEA55213.1|3618186_3619143_+	putative xanthine dehydrogenase, FAD-binding subunit	NA	NA	NA	NA	NA
VEA55215.1|3619139_3621338_+	putative xanthine dehydrogenase, molybdenum-binding subunit	NA	A0A0P0I429	Acinetobacter_phage	25.8	2.5e-38
VEA55217.1|3621347_3622304_+	xanthine dehydrogenase accessory factor	NA	NA	NA	NA	NA
VEA55219.1|3622282_3622438_+	transcriptional regulator	NA	NA	NA	NA	NA
VEA55221.1|3622911_3623658_+|transposase	IS911 transposase orfB	transposase	Q716C2	Shigella_phage	59.0	2.5e-83
VEA55223.1|3623627_3624281_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA55225.1|3624277_3624646_-	CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system	NA	NA	NA	NA	NA
VEA55227.1|3624666_3624984_-	CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system	NA	NA	NA	NA	NA
VEA55229.1|3625002_3625224_-	CP4-44 prophage	NA	NA	NA	NA	NA
VEA55231.1|3625232_3625709_-	CP4-6 prophage; putative DNA repair protein	NA	NA	NA	NA	NA
VEA55233.1|3625724_3626186_-	CP4-57 prophage; putative antirestriction protein	NA	A9J566	Pseudomonas_phage	33.6	7.0e-15
VEA55235.1|3626427_3627174_-|transposase	IS911 transposase orfB	transposase	Q716C2	Shigella_phage	59.0	2.5e-83
VEA55237.1|3627686_3627821_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA55239.1|3627956_3628838_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEA55241.1|3628834_3629527_-	cation transport protein chaC	NA	NA	NA	NA	NA
VEA55243.1|3629553_3630738_-	inner membrane transport protein YdhP	NA	NA	NA	NA	NA
VEA55245.1|3631056_3631989_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA55247.1|3632724_3633192_-	CP4-57 prophage protein	NA	NA	NA	NA	NA
VEA55249.1|3633215_3633656_-	CP4-6 prophage; putative DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VEA55251.1|3633655_3633892_-	CP4-57 prophage; putative inner membrane protein	NA	NA	NA	NA	NA
VEA55253.1|3633932_3634634_-	CP4-57 prophage; putative DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VEA55255.1|3634850_3635672_-	CP4-6 prophage protein	NA	A0A2C9CX26	Yersinia_phage	38.7	4.7e-46
VEA55257.1|3635763_3636627_-	CP4-6 prophage; putative GTP-binding protein	NA	NA	NA	NA	NA
VEA55259.1|3636724_3637891_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEA55261.1|3638385_3638961_+	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA	NA
VEA55263.1|3639103_3639310_+	putative phage-related regulatory protein	NA	NA	NA	NA	NA
VEA55265.1|3639471_3640338_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VEA55267.1|3640334_3640634_-|transposase	transposase	transposase	NA	NA	NA	NA
VEA55269.1|3641377_3641947_+	molecular chaperone	NA	NA	NA	NA	NA
VEA55271.1|3642052_3644902_+	chaperone ATPase	NA	K4FB40	Cronobacter_phage	41.2	1.2e-128
VEA55273.1|3644901_3645093_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA55275.1|3645153_3646872_+|protease	ATP-dependent metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	38.2	3.7e-85
VEA55277.1|3646959_3647418_+	Heat shock protein Hsp20	NA	NA	NA	NA	NA
VEA55279.1|3647440_3648355_+	YfdX protein	NA	NA	NA	NA	NA
VEA55281.1|3648457_3649345_+	YfdX protein	NA	NA	NA	NA	NA
VEA55283.1|3649441_3650053_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEA55285.1|3650132_3651278_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA55287.1|3651267_3651708_+	Thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	37.2	4.5e-11
VEA55289.1|3651711_3653427_+	Sodium/hydrogen exchanger precursor	NA	NA	NA	NA	NA
VEA55291.1|3653423_3653921_+	Predicted membrane protein	NA	NA	NA	NA	NA
VEA55293.1|3653898_3654363_+	Peptidase M48, Ste24p precursor	NA	NA	NA	NA	NA
VEA55295.1|3654379_3654865_+	Peptidase M48, Ste24p precursor	NA	NA	NA	NA	NA
VEA55297.1|3655338_3656040_+	2-alkenal reductase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.3	3.0e-17
VEA55299.1|3656264_3657245_-|transposase	IS5 transposase and trans-activator	transposase	A0A077K814	Ralstonia_phage	57.3	2.0e-91
VEA55301.1|3657295_3658108_-|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	transposase	U5P429	Shigella_phage	93.3	2.5e-148
VEA55303.1|3658201_3659353_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
VEA55305.1|3659309_3659666_-|transposase	transposase IS3/IS911 family protein	transposase	U5P4I9	Shigella_phage	91.2	1.8e-31
VEA55307.1|3660418_3662410_+	DNA mismatch repair protein	NA	NA	NA	NA	NA
VEA55309.1|3662801_3663998_-|integrase	site-specific recombinase, phage integrase	integrase	Q7M297	Enterobacteria_phage	56.0	5.8e-130
VEA55311.1|3664351_3665605_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
3665509:3665525	attR	CGGCGATTTTTTCCAGC	NA	NA	NA	NA
VEA55313.1|3665616_3666720_-	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
VEA55315.1|3667007_3668063_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	61.1	9.1e-119
VEA55317.1|3668101_3668503_-	sigma factor-binding protein crl (curlin genes transcriptional activator)	NA	NA	NA	NA	NA
VEA55319.1|3668560_3669805_-	esterase	NA	NA	NA	NA	NA
VEA55321.1|3669896_3670355_-	xanthine-guanine phosphoribosyltransferase	NA	NA	NA	NA	NA
VEA55323.1|3670615_3672073_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA	NA
VEA55325.1|3672129_3672630_-	peptide chain release factor H	NA	NA	NA	NA	NA
VEA55327.1|3672598_3672865_-	ykfJ	NA	NA	NA	NA	NA
VEA55330.1|3673153_3673543_-	putative acetyltransferase	NA	NA	NA	NA	NA
VEA55332.1|3673678_3674029_-	toxin YafO	NA	NA	NA	NA	NA
VEA55334.1|3674031_3674325_-	antitoxin of the YafO-YafN toxin-antitoxin system	NA	NA	NA	NA	NA
VEA55336.1|3674376_3675432_-	DNA polymerase IV	NA	NA	NA	NA	NA
VEA55338.1|3675502_3675727_-	lateral flagellar motor protein B (MotB-like)	NA	NA	NA	NA	NA
VEA55340.1|3675767_3676139_-	Chemotaxis protein MotB	NA	NA	NA	NA	NA
VEA55342.1|3676233_3677973_+	flagellar system protein	NA	NA	NA	NA	NA
VEA55344.1|3678196_3678694_-|transposase	RAYT REP element-mobilizing transposase; TnpA(REP)	transposase	NA	NA	NA	NA
>prophage 9
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	4012421	4066623	4692996	transposase	Shigella_phage(27.78%)	58	NA	NA
VEA55942.1|4012421_4013366_-|transposase	transposase	transposase	Q2A0A7	Sodalis_phage	51.2	5.0e-60
VEA55944.1|4013832_4015059_+	multidrug resistance protein	NA	NA	NA	NA	NA
VEA55946.1|4015091_4016384_+	inner membrane protein	NA	NA	NA	NA	NA
VEA55948.1|4016393_4016633_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEA55950.1|4016728_4017880_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
VEA55952.1|4017889_4018657_+	ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
VEA55954.1|4018653_4018911_+	Protein of uncharacterised function (DUF3343)	NA	NA	NA	NA	NA
VEA55956.1|4018864_4019836_+	SdiA-regulated domain protein	NA	NA	NA	NA	NA
VEA55958.1|4019903_4021082_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEA55960.1|4021094_4021649_-	RNA 2'-phosphotransferase-like protein	NA	A0A2R2ZGT8	Clostridioides_phage	45.6	2.7e-37
VEA55962.1|4021898_4022582_+	putative transporter	NA	NA	NA	NA	NA
VEA55964.1|4022578_4023040_+	putative transporter	NA	NA	NA	NA	NA
VEA55966.1|4023052_4024225_+	isoaspartyl dipeptidase	NA	NA	NA	NA	NA
VEA55968.1|4024289_4025201_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VEA55970.1|4025193_4025586_-	DNA replication/recombination/repair protein	NA	NA	NA	NA	NA
VEA55972.1|4026257_4027088_+	Protein of uncharacterised function (DUF2686)	NA	NA	NA	NA	NA
VEA55974.1|4027228_4027954_-	uxu operon transcriptional regulator	NA	NA	NA	NA	NA
VEA55976.1|4028000_4028195_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA55978.1|4028216_4029677_-	D-mannonate oxidoreductase, NAD-binding	NA	H8ZJP8	Ostreococcus_tauri_virus	32.2	1.6e-49
VEA55980.1|4029757_4030942_-	mannonate dehydratase	NA	NA	NA	NA	NA
VEA55982.1|4031281_4032625_+	high-affinity gluconate transporter	NA	NA	NA	NA	NA
VEA55984.1|4032867_4033770_-	FimH protein	NA	NA	NA	NA	NA
VEA55986.1|4033789_4034293_-	P pilus assembly protein, pilin FimA	NA	NA	NA	NA	NA
VEA55988.1|4034305_4034836_-	FimF protein	NA	NA	NA	NA	NA
VEA55990.1|4034845_4037482_-	outer membrane usher protein FimD	NA	NA	NA	NA	NA
VEA55992.1|4037548_4038274_-	type I fimbrial chaperone	NA	NA	NA	NA	NA
VEA55993.1|4038310_4038808_-	type-1 fimbrial protein FimI	NA	NA	NA	NA	NA
VEA55994.1|4038914_4039463_-	fimbrial protein	NA	NA	NA	NA	NA
VEA55995.1|4039943_4040540_-	tyrosine recombinase	NA	A0A2L1IV36	Escherichia_phage	53.4	3.9e-50
VEA55997.1|4041016_4041619_-	tyrosine recombinase	NA	A0A2L1IV36	Escherichia_phage	52.3	3.1e-55
VEA55999.1|4041878_4042274_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA56001.1|4043072_4043789_+	N-acetylneuraminic acid outer membrane porin	NA	NA	NA	NA	NA
VEA56003.1|4043808_4044915_+	N-acetylneuraminic acid mutarotase	NA	NA	NA	NA	NA
VEA56004.1|4044979_4045960_+	YjhS protein	NA	Q08JA2	Stx2-converting_phage	55.9	9.4e-102
VEA56006.1|4045967_4046618_-	endonuclease	NA	NA	NA	NA	NA
VEA56008.1|4046996_4047182_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEA56010.1|4047496_4049038_+|transposase	transposase for ISEc12	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
VEA56012.1|4049052_4049799_+|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
VEA56014.1|4050145_4051504_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEA56016.1|4052236_4052494_-	Biofilm development protein YmgB/AriR	NA	NA	NA	NA	NA
VEA56018.1|4053254_4053464_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	98.6	2.2e-32
VEA56020.1|4053464_4053758_-	IS1 protein InsB	NA	U5P0U6	Shigella_phage	89.0	4.2e-42
VEA56022.1|4054243_4054765_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
VEA56024.1|4054761_4055715_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA	NA
VEA56026.1|4055801_4057088_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VEA56028.1|4057084_4058125_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VEA56030.1|4058169_4059072_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VEA56032.1|4059068_4059512_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VEA56034.1|4059459_4060068_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VEA56036.1|4060064_4061021_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
VEA56038.1|4061021_4061789_+	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VEA56040.1|4062346_4062604_-	KpLE2 phage-like element	NA	NA	NA	NA	NA
VEA56041.1|4062686_4062929_-|transposase	putative transposase	transposase	Q716C2	Shigella_phage	92.4	4.7e-39
VEA56043.1|4062925_4063339_-|transposase	transposase ORF B (fragment), IS911	transposase	Q716C2	Shigella_phage	95.6	1.5e-61
VEA56045.1|4063655_4064807_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
VEA56047.1|4064726_4065077_-|transposase	transposase ORF A, IS3 family	transposase	Q716C1	Shigella_phage	97.7	8.9e-39
VEA56049.1|4065177_4065750_+	lysogenic conversion protein from Bacteriophage P2-EC53	NA	Q858R9	Enterobacteria_phage	69.0	2.2e-71
VEA56051.1|4065798_4066623_-	Uncharacterised protein	NA	L7TR00	Rhizobium_phage	35.5	3.0e-16
>prophage 10
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	4595935	4602078	4692996		Enterobacteria_phage(50.0%)	7	NA	NA
VEA57008.1|4595935_4597066_-	dTDP-4-oxo-6-deoxy-D-glucose transaminase	NA	A0A0F7LAY0	uncultured_marine_virus	41.7	2.0e-18
VEA57010.1|4597070_4597745_-	TDP-fucosamine acetyltransferase	NA	NA	NA	NA	NA
VEA57012.1|4597722_4598604_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	66.3	8.7e-107
VEA57014.1|4598622_4599180_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	55.0	1.4e-54
VEA57016.1|4599332_4599689_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.5	8.6e-21
VEA57018.1|4599688_4600951_-	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1HNJ7	Paramecium_bursaria_Chlorella_virus	27.0	1.0e-23
VEA57020.1|4600947_4602078_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A1V0SAG5	Catovirus	32.8	3.9e-27
>prophage 11
LR134152	Escherichia coli strain NCTC9104 genome assembly, chromosome: 1	4692996	4633227	4641686	4692996	transposase	Escherichia_phage(66.67%)	10	NA	NA
VEA57068.1|4633227_4633605_-|transposase	IS1 transposase	transposase	Q71TF0	Escherichia_phage	100.0	1.3e-67
VEA57070.1|4633649_4633925_-|transposase	IS1 transposase	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
VEA57072.1|4633953_4634268_-	protein	NA	NA	NA	NA	NA
VEA57074.1|4634637_4635588_+	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
VEA57076.1|4635741_4636017_+|transposase	IS1 transposase	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
VEA57078.1|4636373_4637237_-	ribose operon repressor	NA	A0A2L1IV26	Escherichia_phage	100.0	2.9e-06
VEA57080.1|4637240_4638170_-	ribokinase	NA	NA	NA	NA	NA
VEA57082.1|4638295_4639186_-	D-ribose transporter subunit RbsB	NA	C6ZCU4	Enterobacteria_phage	23.4	4.3e-05
VEA57084.1|4639210_4640176_-	high-affinity ribose transport system permease protein RbsC	NA	NA	NA	NA	NA
VEA57086.1|4640180_4641686_-	high affinity ribose transport ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	27.1	6.0e-15
