assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635805.1_34211_C02	LR134171	Haemophilus influenzae strain NCTC12699 genome assembly, chromosome: 1	1	711052-711232	1,1	CRISPRCasFinder,PILER-CR	no	csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	cas3,DinG,DEDDh,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,RT	Type III-A,Type III-B,Type III-D,Type III-C	GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC,GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	37,37	0	0	NA	NA	NA:NA	2,2	2	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	cas3,DinG,DEDDh,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,RT	NA|70aa|up_4|LR134171.1_706825_707035_-,NA|76aa|down_9|LR134171.1_723498_723726_+	NA|426aa|up_9|LR134171.1_701753_703031_+	PRK09225, PRK09225, threonine synthase; Validated	NA|370aa|up_8|LR134171.1_703881_704991_+	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein	NA|332aa|up_7|LR134171.1_705003_705999_+	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains	NA|108aa|up_6|LR134171.1_706118_706442_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|92aa|up_5|LR134171.1_706491_706767_-	cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like	NA|70aa|up_4|LR134171.1_706825_707035_-	NA	NA|263aa|up_3|LR134171.1_707096_707885_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|170aa|up_2|LR134171.1_707939_708449_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|460aa|up_1|LR134171.1_708551_709931_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|287aa|up_0|LR134171.1_710091_710952_-	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	csx1|386aa|down_0|LR134171.1_712361_713519_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|390aa|down_1|LR134171.1_713518_714688_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx16|97aa|down_2|LR134171.1_714697_714988_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	cas6|308aa|down_3|LR134171.1_715051_715975_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csm5gr7|506aa|down_4|LR134171.1_715971_717489_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|313aa|down_5|LR134171.1_717485_718424_-	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm3gr7|234aa|down_6|LR134171.1_718433_719135_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|156aa|down_7|LR134171.1_719127_719595_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|724aa|down_8|LR134171.1_719604_721776_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|76aa|down_9|LR134171.1_723498_723726_+	NA
GCA_900635805.1_34211_C02	LR134171	Haemophilus influenzae strain NCTC12699 genome assembly, chromosome: 1	2	723203-723454	1,2,2	CRT,PILER-CR,CRISPRCasFinder	no	csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	cas3,DinG,DEDDh,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,RT	Type III-A,Type III-B,Type III-D,Type III-C	TAGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC,TGGTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACTA,GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	39,41,37	0	0	NA	NA	NA:NA:NA	3,3,3	3	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	cas3,DinG,DEDDh,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,RT	NA|35aa|up_9|LR134171.1_711076_711181_+,NA|76aa|down_0|LR134171.1_723498_723726_+,NA|121aa|down_3|LR134171.1_726801_727164_+,NA|287aa|down_4|LR134171.1_727237_728098_+	NA|35aa|up_9|LR134171.1_711076_711181_+	NA	csx1|386aa|up_8|LR134171.1_712361_713519_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|390aa|up_7|LR134171.1_713518_714688_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx16|97aa|up_6|LR134171.1_714697_714988_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	cas6|308aa|up_5|LR134171.1_715051_715975_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csm5gr7|506aa|up_4|LR134171.1_715971_717489_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|313aa|up_3|LR134171.1_717485_718424_-	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm3gr7|234aa|up_2|LR134171.1_718433_719135_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|156aa|up_1|LR134171.1_719127_719595_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|724aa|up_0|LR134171.1_719604_721776_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|76aa|down_0|LR134171.1_723498_723726_+	NA	NA|155aa|down_1|LR134171.1_724737_725202_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|495aa|down_2|LR134171.1_725216_726701_+	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|121aa|down_3|LR134171.1_726801_727164_+	NA	NA|287aa|down_4|LR134171.1_727237_728098_+	NA	NA|708aa|down_5|LR134171.1_728388_730512_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|144aa|down_6|LR134171.1_730793_731225_+	TIGR01987, Uncharacterized_protein_HI_0074, nucleotidyltransferase substrate binding protein, HI0074 family	NA|115aa|down_7|LR134171.1_731226_731571_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|199aa|down_8|LR134171.1_731583_732180_-	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|297aa|down_9|LR134171.1_732279_733170_+	PRK02231, ppnK, NAD(+) kinase
GCA_900635805.1_34211_C02	LR134171	Haemophilus influenzae strain NCTC12699 genome assembly, chromosome: 1	3	724304-724412	3	CRISPRCasFinder	no	csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	cas3,DinG,DEDDh,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,RT	Type III-A,Type III-B,Type III-D,Type III-C	GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	37	0	0	NA	NA	NA	1	1	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	cas3,DinG,DEDDh,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,WYL,RT	NA|76aa|up_0|LR134171.1_723498_723726_+,NA|121aa|down_2|LR134171.1_726801_727164_+,NA|287aa|down_3|LR134171.1_727237_728098_+	csx1|386aa|up_9|LR134171.1_712361_713519_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|390aa|up_8|LR134171.1_713518_714688_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx16|97aa|up_7|LR134171.1_714697_714988_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	cas6|308aa|up_6|LR134171.1_715051_715975_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csm5gr7|506aa|up_5|LR134171.1_715971_717489_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|313aa|up_4|LR134171.1_717485_718424_-	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm3gr7|234aa|up_3|LR134171.1_718433_719135_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|156aa|up_2|LR134171.1_719127_719595_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|724aa|up_1|LR134171.1_719604_721776_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|76aa|up_0|LR134171.1_723498_723726_+	NA	NA|155aa|down_0|LR134171.1_724737_725202_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|495aa|down_1|LR134171.1_725216_726701_+	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|121aa|down_2|LR134171.1_726801_727164_+	NA	NA|287aa|down_3|LR134171.1_727237_728098_+	NA	NA|708aa|down_4|LR134171.1_728388_730512_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|144aa|down_5|LR134171.1_730793_731225_+	TIGR01987, Uncharacterized_protein_HI_0074, nucleotidyltransferase substrate binding protein, HI0074 family	NA|115aa|down_6|LR134171.1_731226_731571_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|199aa|down_7|LR134171.1_731583_732180_-	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|297aa|down_8|LR134171.1_732279_733170_+	PRK02231, ppnK, NAD(+) kinase	NA|559aa|down_9|LR134171.1_733281_734958_+	TIGR00634, DNA_repair_protein_RecN, DNA repair protein RecN
