assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635865.1_35605_F01	LR134190	Salmonella enterica subsp. enterica strain NCTC6754 genome assembly, chromosome: 1	1	1724035-1724276	1	PILER-CR	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	Orphan	TTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTATATCCAAAAGAAA	53	1	2	1724202-1724256|1724202-1724256	LR134190.1_1724277-1724331|LR134190.1_1724502-1724556	NA	2	2	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	NA|75aa|up_6|LR134190.1_1719881_1720106_+,NA	NA|79aa|up_9|LR134190.1_1718610_1718847_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|52aa|up_8|LR134190.1_1719012_1719168_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|210aa|up_7|LR134190.1_1719192_1719822_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|75aa|up_6|LR134190.1_1719881_1720106_+	NA	NA|241aa|up_5|LR134190.1_1720734_1721457_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|65aa|up_4|LR134190.1_1721617_1721812_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|168aa|up_3|LR134190.1_1721808_1722312_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|84aa|up_2|LR134190.1_1722526_1722778_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|239aa|up_1|LR134190.1_1722771_1723488_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|79aa|up_0|LR134190.1_1723439_1723676_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|230aa|down_0|LR134190.1_1725715_1726405_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|85aa|down_1|LR134190.1_1726502_1726757_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|233aa|down_2|LR134190.1_1726788_1727487_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|438aa|down_3|LR134190.1_1727533_1728847_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|229aa|down_4|LR134190.1_1728913_1729600_+	PRK12379, PRK12379, propionate kinase	NA|181aa|down_5|LR134190.1_1729580_1730123_+	PRK12379, PRK12379, propionate kinase	NA|594aa|down_6|LR134190.1_1730156_1731938_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|56aa|down_7|LR134190.1_1731924_1732092_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|140aa|down_8|LR134190.1_1732033_1732453_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_9|LR134190.1_1732522_1733887_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCA_900635865.1_35605_F01	LR134190	Salmonella enterica subsp. enterica strain NCTC6754 genome assembly, chromosome: 1	2	2042753-2044184	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,23,23	23	TypeI-E	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	NA,NA	NA|85aa|up_9|LR134190.1_2037567_2037822_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|87aa|up_8|LR134190.1_2037790_2038051_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|44aa|up_7|LR134190.1_2038004_2038136_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|81aa|up_6|LR134190.1_2038128_2038371_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|140aa|up_5|LR134190.1_2038620_2039040_+	PRK05380, pyrG, CTP synthetase; Validated	NA|194aa|up_4|LR134190.1_2039183_2039765_+	PRK05380, pyrG, CTP synthetase; Validated	NA|166aa|up_3|LR134190.1_2039749_2040247_+	PRK05380, pyrG, CTP synthetase; Validated	NA|92aa|up_2|LR134190.1_2040357_2040633_+	PRK00077, eno, enolase; Provisional	NA|190aa|up_1|LR134190.1_2040712_2041282_+	PRK00077, eno, enolase; Provisional	NA|204aa|up_0|LR134190.1_2041773_2042385_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|LR134190.1_2044281_2045079_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|70aa|down_1|LR134190.1_2045166_2045376_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|135aa|down_2|LR134190.1_2046438_2046843_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|61aa|down_3|LR134190.1_2046826_2047009_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|228aa|down_4|LR134190.1_2047001_2047685_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|43aa|down_5|LR134190.1_2047641_2047770_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|353aa|down_6|LR134190.1_2047769_2048828_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|235aa|down_7|LR134190.1_2048778_2049483_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|178aa|down_8|LR134190.1_2049558_2050092_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|70aa|down_9|LR134190.1_2050084_2050294_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_900635865.1_35605_F01	LR134190	Salmonella enterica subsp. enterica strain NCTC6754 genome assembly, chromosome: 1	3	2060473-2062210	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAA	29,29,25	0	0	NA	NA	I-E:I-E:I-E	27,28,28	28	TypeI-E	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	NA,NA	cas3|721aa|up_9|LR134190.1_2052413_2054576_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|314aa|up_8|LR134190.1_2054587_2055529_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas8e|173aa|up_7|LR134190.1_2055626_2056145_+	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|150aa|up_6|LR134190.1_2056141_2056591_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|367aa|up_5|LR134190.1_2056674_2057775_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_4|LR134190.1_2057785_2058532_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_3|LR134190.1_2058513_2059164_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|181aa|up_2|LR134190.1_2059160_2059703_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas1|143aa|up_1|LR134190.1_2059653_2060082_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|69aa|up_0|LR134190.1_2060081_2060288_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|353aa|down_0|LR134190.1_2062213_2063272_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|68aa|down_1|LR134190.1_2063738_2063942_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|149aa|down_2|LR134190.1_2063938_2064385_+	TIGR02039, Sulfate_adenylyltransferase_subunit_2, sulfate adenylyltransferase, small subunit	NA|480aa|down_3|LR134190.1_2064446_2065886_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|74aa|down_4|LR134190.1_2065872_2066094_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|105aa|down_5|LR134190.1_2066068_2066383_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|68aa|down_6|LR134190.1_2066586_2066790_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|105aa|down_7|LR134190.1_2067054_2067369_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|168aa|down_8|LR134190.1_2067436_2067940_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|55aa|down_9|LR134190.1_2067936_2068101_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase
GCA_900635865.1_35605_F01	LR134190	Salmonella enterica subsp. enterica strain NCTC6754 genome assembly, chromosome: 1	4	2253744-2253851	3	CRISPRCasFinder	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	Orphan	TGTCCCACCCTGTACCACTTTTTTT	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,WYL	NA|64aa|up_9|LR134190.1_2246760_2246952_-,NA|92aa|up_8|LR134190.1_2247423_2247699_-,NA|77aa|up_2|LR134190.1_2250824_2251055_+,NA|168aa|down_2|LR134190.1_2256823_2257327_+,NA|90aa|down_3|LR134190.1_2258661_2258931_-,NA|80aa|down_4|LR134190.1_2259499_2259739_-,NA|76aa|down_6|LR134190.1_2260449_2260677_-	NA|64aa|up_9|LR134190.1_2246760_2246952_-	NA	NA|92aa|up_8|LR134190.1_2247423_2247699_-	NA	NA|188aa|up_7|LR134190.1_2247730_2248294_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|310aa|up_6|LR134190.1_2248380_2249310_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|74aa|up_5|LR134190.1_2249306_2249528_-	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|98aa|up_4|LR134190.1_2249910_2250204_-	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|78aa|up_3|LR134190.1_2250368_2250602_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|77aa|up_2|LR134190.1_2250824_2251055_+	NA	NA|56aa|up_1|LR134190.1_2252455_2252623_-	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|144aa|up_0|LR134190.1_2252936_2253368_-	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|621aa|down_0|LR134190.1_2254080_2255943_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|38aa|down_1|LR134190.1_2256081_2256195_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|168aa|down_2|LR134190.1_2256823_2257327_+	NA	NA|90aa|down_3|LR134190.1_2258661_2258931_-	NA	NA|80aa|down_4|LR134190.1_2259499_2259739_-	NA	NA|101aa|down_5|LR134190.1_2260053_2260356_-	PRK09692, PRK09692, integrase; Provisional	NA|76aa|down_6|LR134190.1_2260449_2260677_-	NA	NA|83aa|down_7|LR134190.1_2260654_2260903_-	PRK09692, PRK09692, integrase; Provisional	NA|104aa|down_8|LR134190.1_2261006_2261318_-	PRK09692, PRK09692, integrase; Provisional	NA|145aa|down_9|LR134190.1_2262126_2262561_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family
