bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	401320	401347	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	401320-401347	GAATTTCGAAAAGAAATTCTACAGGCAA	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	625103	625130	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	625103-625130	GAATTTCGAAAAGAAATTCTACAGGCAA	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	795066	795039	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	795039-795066	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	1035098	1035071	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1035071-1035098	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	1325157	1325184	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1325157-1325184	GAATTTCGAAAAGAAATTCTACAGGCAA	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	1413931	1413904	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1413904-1413931	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	1657263	1657236	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1657236-1657263	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	1871735	1871762	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1871735-1871762	GAATTTCGAAAAGAAATTCTACAGGCAA	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	1980527	1980500	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1980500-1980527	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	2333791	2333764	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2333764-2333791	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	28	0	0	1	28	2675774	2675801	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2675774-2675801	GAATTTCGAAAAGAAATTCTACAGGCAA	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	96.43	28	1	0	1	28	361227	361254	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-06	42.8	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	361227-361254	GAATTTCGAAAAGAAATTCTACAAGCAA	1
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	96.43	28	1	0	1	28	909364	909337	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-06	42.8	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	909337-909364	TTGCTTGTAGAATTTCTTTTCGAAATTC	1
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	92.86	28	2	0	1	28	1111327	1111354	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1111327-1111354	GAATTTCAAAAAGAAATTCTACAGACAA	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	92.86	28	2	0	1	28	1776729	1776756	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1776729-1776756	GAATTTCGAAAAGAAATTCTACAAACAA	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	92.86	28	2	0	1	28	1989877	1989850	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1989850-1989877	TTGTCTGTAGAATTTCCTTTCGAAATTC	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	92.86	28	2	0	1	28	2344599	2344572	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2344572-2344599	TTGTCTGTAGAATTTCTTTTTGAAATTC	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.1|285153|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	92.86	28	2	0	1	28	2792665	2792638	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2792638-2792665	TTGTTTGTAGAATTTCTTTTCGAAATTC	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	29	0	0	1	29	285097	285125	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	285097-285125	AGCTGGCGGAAAGTCAGCTTACAATAATG	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	29	0	0	1	29	804046	804018	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	804018-804046	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	29	0	0	1	29	1009123	1009095	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1009095-1009123	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	29	0	0	1	29	2514048	2514020	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	2514020-2514048	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	29	0	0	1	29	2514104	2514076	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	2514076-2514104	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	96.55	29	1	0	1	29	2182500	2182528	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	5e-07	44.4	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	2182500-2182528	AGCTGGCGGAAAGTCAGCTTACATTAATG	1
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	361171	361199	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	361171-361199	AGCTGACGAAAAGTCAGCTTACAATAATG	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	625215	625243	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	625215-625243	AGCTGGCGAAAAGACAGCTTACAATAATG	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1035156	1035128	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1035128-1035156	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1111269	1111297	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1111269-1111297	AGCTGACGAAAAGTCAGCTTACAATAATG	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1325215	1325243	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1325215-1325243	AGCTGACGAAAAGTCAGCTTACAATAATG	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1413989	1413961	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1413961-1413989	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1657208	1657180	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1657180-1657208	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1657321	1657293	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1657293-1657321	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1671796	1671768	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1671768-1671796	CATTATTGTAAGCTGTCTTTTCGCCAGCT	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	1.2|285208|29|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	93.10	29	2	0	1	29	1979185	1979157	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1979157-1979185	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	2.1|625141|28|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	96.43	28	1	0	1	28	1979146	1979119	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-06	42.8	1.0	GGTGTGGGCCCCAACACAGAGAATTTCA	1979119-1979146	TGAAATTCTCTATGTTGGGGCCCACACC	1
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	4.1|1979060|26|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	26	0	0	1	26	795059	795084	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	795059-795084	CGAAATTCTCTGTGTTGGGGCCCACA	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	4.1|1979060|26|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	26	0	0	1	26	1980520	1980545	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	1980520-1980545	CGAAATTCTCTGTGTTGGGGCCCACA	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	4.1|1979060|26|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	100.00	26	0	0	1	26	2333784	2333809	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	2333784-2333809	CGAAATTCTCTGTGTTGGGGCCCACA	0
LR134193	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	7.1|2675814|34|LR134193|CRISPRCasFinder	LR134193.1	Staphylococcus aureus strain NCTC13616 genome assembly, chromosome: 1	94.12	34	2	0	1	34	1009082	1009049	285126-285263|625111-625198|909353-909437|1979028-1979117|2307462-2307586|2549961-2550044|2675790-2675871	4e-08	49.1	1.0	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1009049-1009082	ATTGGAAATCCAATTCCTCTTTGTTGGGGCCCAT	2
