assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900635945.1_37430_C01	LR134202	Klebsiella pneumoniae strain NCTC9180 genome assembly, chromosome: 1	1	402240-402405	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL	Orphan	TTCAGTGCCCGGTGGCGGCTGCGCCTTACCGGGCCTACACGCGGCTCCGTAACCC	55	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA|315aa|up_8|LR134202.1_392269_393214_-,NA	NA|369aa|up_9|LR134202.1_391097_392204_-	pfam13265, DUF4056, Protein of unknown function (DUF4056)	NA|315aa|up_8|LR134202.1_392269_393214_-	NA	NA|374aa|up_7|LR134202.1_393232_394354_-	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|232aa|up_6|LR134202.1_394744_395440_+	cd19367, TenA_C_ScTHI20-like, TenA_C family similar to the C-terminal TenA_C domain of Saccharomyces cerevisiae THI20 protein	NA|243aa|up_5|LR134202.1_395436_396165_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|247aa|up_4|LR134202.1_396161_396902_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|312aa|up_3|LR134202.1_396926_397862_+	cd13651, PBP2_ThiY, Substrate binding domain of ABC-type transporters for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|461aa|up_2|LR134202.1_398171_399554_+	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate transaminase	NA|491aa|up_1|LR134202.1_399572_401045_+	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|294aa|up_0|LR134202.1_401267_402149_+	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|397aa|down_0|LR134202.1_402487_403678_-	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|448aa|down_1|LR134202.1_403780_405124_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|247aa|down_2|LR134202.1_405120_405861_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|331aa|down_3|LR134202.1_405946_406939_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|340aa|down_4|LR134202.1_407181_408201_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|149aa|down_5|LR134202.1_408463_408910_+	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	NA|118aa|down_6|LR134202.1_408869_409223_+	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	NA|57aa|down_7|LR134202.1_409219_409390_+	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	NA|252aa|down_8|LR134202.1_409383_410139_+	PRK05157, PRK05157, pyrroloquinoline quinone biosynthesis protein PqqC; Provisional	NA|93aa|down_9|LR134202.1_410141_410420_+	PRK02079, PRK02079, pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
GCA_900635945.1_37430_C01	LR134202	Klebsiella pneumoniae strain NCTC9180 genome assembly, chromosome: 1	2	1440370-1440459	2	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL	Orphan	CACGCAGATTCCATAACCGCACCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA,NA	NA|289aa|up_9|LR134202.1_1432141_1433008_-	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase	NA|433aa|up_8|LR134202.1_1433090_1434389_+	PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional	NA|132aa|up_7|LR134202.1_1434552_1434948_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|304aa|up_6|LR134202.1_1434944_1435856_-	PRK11761, cysM, cysteine synthase CysM	NA|297aa|up_5|LR134202.1_1435974_1436865_-	PRK10851, PRK10851, sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA|75aa|up_4|LR134202.1_1436845_1437070_-	PRK10851, PRK10851, sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA|292aa|up_3|LR134202.1_1437059_1437935_-	PRK11602, cysW, sulfate/thiosulfate ABC transporter permease CysW	NA|278aa|up_2|LR134202.1_1437934_1438768_-	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT	NA|47aa|up_1|LR134202.1_1438767_1438908_-	PRK10852, PRK10852, thiosulfate ABC transporter substrate-binding protein CysP	NA|268aa|up_0|LR134202.1_1438979_1439783_-	PRK10852, PRK10852, thiosulfate ABC transporter substrate-binding protein CysP	NA|300aa|down_0|LR134202.1_1440507_1441407_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|192aa|down_1|LR134202.1_1441501_1442077_-	PRK10718, PRK10718, RpoE-regulated lipoprotein; Provisional	NA|150aa|down_2|LR134202.1_1442138_1442588_-	pfam11143, DUF2919, Protein of unknown function (DUF2919)	NA|142aa|down_3|LR134202.1_1442574_1443000_-	PRK03624, PRK03624, putative acetyltransferase; Provisional	NA|291aa|down_4|LR134202.1_1443211_1444084_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|300aa|down_5|LR134202.1_1444083_1444983_+	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|571aa|down_6|LR134202.1_1445036_1446749_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|116aa|down_7|LR134202.1_1446771_1447119_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|319aa|down_8|LR134202.1_1447610_1448567_+	PRK12346, PRK12346, transaldolase A; Provisional	NA|665aa|down_9|LR134202.1_1448583_1450578_+	PRK12753, PRK12753, transketolase; Reviewed
GCA_900635945.1_37430_C01	LR134202	Klebsiella pneumoniae strain NCTC9180 genome assembly, chromosome: 1	3	2207639-2207742	3	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL	Orphan	CGTCTTCCCCCTCACCCTAACCCTCTCCCGG	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA|353aa|up_8|LR134202.1_2195577_2196636_+,NA	NA|478aa|up_9|LR134202.1_2194130_2195564_+	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|353aa|up_8|LR134202.1_2195577_2196636_+	NA	NA|784aa|up_7|LR134202.1_2196653_2199005_+	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|99aa|up_6|LR134202.1_2199106_2199403_-	PRK10486, PRK10486, (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA|296aa|up_5|LR134202.1_2199399_2200287_-	PRK08227, PRK08227, 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA|338aa|up_4|LR134202.1_2200298_2201312_-	PRK15408, PRK15408, autoinducer 2 ABC transporter substrate-binding protein LsrB	NA|335aa|up_3|LR134202.1_2201308_2202313_-	PRK15038, PRK15038, autoinducer 2 ABC transporter permease LsrD	NA|345aa|up_2|LR134202.1_2202313_2203348_-	PRK15432, PRK15432, autoinducer 2 ABC transporter permease LsrC; Provisional	NA|496aa|up_1|LR134202.1_2203344_2204832_-	PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	NA|324aa|up_0|LR134202.1_2205050_2206022_+	PRK15418, PRK15418, transcriptional regulator LsrR; Provisional	NA|674aa|down_0|LR134202.1_2207955_2209977_+	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|377aa|down_1|LR134202.1_2210084_2211215_-	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|236aa|down_2|LR134202.1_2211300_2212008_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|201aa|down_3|LR134202.1_2212051_2212654_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|167aa|down_4|LR134202.1_2212673_2213174_+	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|330aa|down_5|LR134202.1_2213247_2214237_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|315aa|down_6|LR134202.1_2214535_2215480_+	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|416aa|down_7|LR134202.1_2215747_2216995_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|185aa|down_8|LR134202.1_2217010_2217565_-	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|496aa|down_9|LR134202.1_2217694_2219182_-	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus
GCA_900635945.1_37430_C01	LR134202	Klebsiella pneumoniae strain NCTC9180 genome assembly, chromosome: 1	4	2716008-2716135	4	CRISPRCasFinder	no	cas3	DEDDh,DinG,csa3,cas3,WYL	Unclear	CGCCTTACCCGGGCTACGCACAGCGCAGAACTGTAGCCCTGCTAAGC	47	0	0	NA	NA	NA	1	1	Unclear	DEDDh,DinG,csa3,cas3,WYL	NA,NA	NA|707aa|up_9|LR134202.1_2704652_2706773_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|230aa|up_8|LR134202.1_2706934_2707624_+	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	cas3|694aa|up_7|LR134202.1_2707629_2709711_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|337aa|up_6|LR134202.1_2709759_2710770_+	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]	NA|249aa|up_5|LR134202.1_2710920_2711667_+	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional	NA|143aa|up_4|LR134202.1_2711667_2712096_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|200aa|up_3|LR134202.1_2712208_2712808_+	pfam07305, DUF1454, Protein of unknown function (DUF1454)	NA|256aa|up_2|LR134202.1_2712917_2713685_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|435aa|up_1|LR134202.1_2713777_2715082_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|255aa|up_0|LR134202.1_2715146_2715911_-	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional	NA|330aa|down_0|LR134202.1_2716159_2717149_-	PRK10752, PRK10752, sulfate ABC transporter substrate-binding protein	NA|80aa|down_1|LR134202.1_2717301_2717541_-	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional	NA|284aa|down_2|LR134202.1_2717989_2718841_+	cd00333, MIP, Major intrinsic protein (MIP) superfamily	NA|504aa|down_3|LR134202.1_2718862_2720374_+	PRK00047, glpK, glycerol kinase GlpK	NA|401aa|down_4|LR134202.1_2720488_2721691_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|down_5|LR134202.1_2721975_2723367_+	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|393aa|down_6|LR134202.1_2723517_2724696_+	pfam05170, AsmA, AsmA family	NA|176aa|down_7|LR134202.1_2724704_2725232_+	pfam05170, AsmA, AsmA family	NA|520aa|down_8|LR134202.1_2725483_2727043_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|460aa|down_9|LR134202.1_2727055_2728435_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase
GCA_900635945.1_37430_C01	LR134202	Klebsiella pneumoniae strain NCTC9180 genome assembly, chromosome: 1	5	3571927-3572141	5	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,WYL	Orphan	TGCCCTCACCCCGGCCCTCTCCCGGTGGGAGAGGGAGCAAACCCTAAAAAAG	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,WYL	NA,NA	NA|426aa|up_9|LR134202.1_3560431_3561709_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|up_8|LR134202.1_3562124_3562904_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|445aa|up_7|LR134202.1_3563001_3564336_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|up_6|LR134202.1_3564388_3565612_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|up_5|LR134202.1_3565715_3566435_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|339aa|up_4|LR134202.1_3566524_3567541_-	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|216aa|up_3|LR134202.1_3567540_3568188_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|324aa|up_2|LR134202.1_3568292_3569264_+	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|461aa|up_1|LR134202.1_3569273_3570656_+	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|411aa|up_0|LR134202.1_3570677_3571910_+	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|556aa|down_0|LR134202.1_3572166_3573834_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|654aa|down_1|LR134202.1_3574038_3576000_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|128aa|down_2|LR134202.1_3576034_3576418_+	PRK01381, PRK01381, trp operon repressor	NA|172aa|down_3|LR134202.1_3576404_3576920_-	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|216aa|down_4|LR134202.1_3577033_3577681_+	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|290aa|down_5|LR134202.1_3577677_3578547_-	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|158aa|down_6|LR134202.1_3578756_3579230_+	PRK10756, PRK10756, protein CreA	NA|230aa|down_7|LR134202.1_3579242_3579932_+	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|475aa|down_8|LR134202.1_3579931_3581356_+	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|453aa|down_9|LR134202.1_3581415_3582774_+	PRK11715, PRK11715, cell envelope integrity protein CreD
