assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	1	979292-979686	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|LR134239.1_978001_978142_-,NA	NA|434aa|up_9|LR134239.1_968698_970000_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|LR134239.1_970047_972282_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|LR134239.1_972359_972608_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|LR134239.1_972607_972943_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|LR134239.1_973013_973805_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|LR134239.1_974032_975670_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|LR134239.1_975757_977056_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|LR134239.1_977115_977988_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|LR134239.1_978001_978142_-	NA	NA|224aa|up_0|LR134239.1_978280_978952_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|241aa|down_0|LR134239.1_980324_981047_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|247aa|down_1|LR134239.1_981061_981802_-	COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]	NA|426aa|down_2|LR134239.1_981828_983106_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_3|LR134239.1_983424_984210_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|LR134239.1_984279_985734_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_5|LR134239.1_985755_987165_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|LR134239.1_987142_987922_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|LR134239.1_987918_988779_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|LR134239.1_988926_989502_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|LR134239.1_989518_989779_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	2	1006735-1008105	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,22,22	22	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_9|LR134239.1_996565_996706_-,NA|47aa|down_1|LR134239.1_1009314_1009455_+	NA|47aa|up_9|LR134239.1_996565_996706_-	NA	NA|371aa|up_8|LR134239.1_996728_997841_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|LR134239.1_998079_1000779_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|LR134239.1_1000876_1002439_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|LR134239.1_1002435_1002972_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|LR134239.1_1002983_1004039_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134239.1_1004049_1004796_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134239.1_1004777_1005428_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134239.1_1005424_1006348_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134239.1_1006344_1006638_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|371aa|down_0|LR134239.1_1008179_1009292_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|47aa|down_1|LR134239.1_1009314_1009455_+	NA	NA|346aa|down_2|LR134239.1_1009901_1010939_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_3|LR134239.1_1011190_1012099_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_4|LR134239.1_1012100_1013528_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_5|LR134239.1_1013527_1014133_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_6|LR134239.1_1014182_1014506_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_7|LR134239.1_1014699_1015011_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_8|LR134239.1_1015029_1015740_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_9|LR134239.1_1015739_1016219_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	3	1009486-1009819	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_0|LR134239.1_1009314_1009455_+,NA	cas3|900aa|up_9|LR134239.1_998079_1000779_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_8|LR134239.1_1000876_1002439_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_7|LR134239.1_1002435_1002972_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_6|LR134239.1_1002983_1004039_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_5|LR134239.1_1004049_1004796_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_4|LR134239.1_1004777_1005428_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_3|LR134239.1_1005424_1006348_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_2|LR134239.1_1006344_1006638_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|371aa|up_1|LR134239.1_1008179_1009292_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|47aa|up_0|LR134239.1_1009314_1009455_+	NA	NA|346aa|down_0|LR134239.1_1009901_1010939_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134239.1_1011190_1012099_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134239.1_1012100_1013528_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134239.1_1013527_1014133_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134239.1_1014182_1014506_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134239.1_1014699_1015011_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134239.1_1015029_1015740_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134239.1_1015739_1016219_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134239.1_1016215_1017265_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134239.1_1017245_1018007_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	4	1517465-1517582	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|300aa|up_9|LR134239.1_1506948_1507848_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|LR134239.1_1508040_1509231_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|LR134239.1_1509227_1510487_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|LR134239.1_1510476_1512105_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|LR134239.1_1512377_1513736_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|LR134239.1_1513740_1514817_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|LR134239.1_1514858_1515065_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|LR134239.1_1515279_1515930_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134239.1_1515983_1516238_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134239.1_1516237_1517368_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134239.1_1517601_1519887_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1235aa|down_1|LR134239.1_1520630_1524335_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|LR134239.1_1524462_1525185_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|LR134239.1_1525331_1527959_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|LR134239.1_1528107_1529796_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|LR134239.1_1529792_1530416_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|LR134239.1_1530559_1534954_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|LR134239.1_1534954_1536604_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|LR134239.1_1536608_1537385_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|LR134239.1_1537458_1538643_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	5	2119414-2119537	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|79aa|up_9|LR134239.1_2108321_2108558_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134239.1_2108868_2110281_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134239.1_2110837_2111047_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134239.1_2111501_2112128_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134239.1_2112148_2114251_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134239.1_2114263_2114902_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134239.1_2114965_2115634_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134239.1_2115630_2116416_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134239.1_2116467_2117232_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134239.1_2117243_2118848_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134239.1_2119851_2121108_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134239.1_2121148_2122522_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134239.1_2122736_2123378_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134239.1_2123417_2124566_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134239.1_2124856_2126068_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134239.1_2126180_2127113_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134239.1_2127109_2128135_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134239.1_2128689_2129859_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134239.1_2130093_2130675_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134239.1_2130802_2131618_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	7	3011890-3012034	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|205aa|up_5|LR134239.1_3007146_3007761_+,NA|40aa|up_4|LR134239.1_3008054_3008174_+,NA|56aa|up_2|LR134239.1_3008932_3009100_+,NA	NA|175aa|up_9|LR134239.1_3005543_3006068_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|LR134239.1_3006064_3006247_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|74aa|up_7|LR134239.1_3006378_3006600_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|84aa|up_6|LR134239.1_3006596_3006848_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|205aa|up_5|LR134239.1_3007146_3007761_+	NA	NA|40aa|up_4|LR134239.1_3008054_3008174_+	NA	NA|143aa|up_3|LR134239.1_3008421_3008850_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_2|LR134239.1_3008932_3009100_+	NA	NA|357aa|up_1|LR134239.1_3009335_3010406_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|LR134239.1_3010540_3011824_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134239.1_3012057_3014319_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134239.1_3014501_3015935_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134239.1_3016010_3017063_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|59aa|down_3|LR134239.1_3017246_3017423_+	pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family	NA|253aa|down_4|LR134239.1_3017440_3018199_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_5|LR134239.1_3018239_3019235_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_6|LR134239.1_3019389_3020208_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_7|LR134239.1_3020208_3021267_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_8|LR134239.1_3021269_3021959_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_9|LR134239.1_3021958_3022732_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	8	3243461-3243557	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|LR134239.1_3235247_3235940_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134239.1_3236159_3236702_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|321aa|up_7|LR134239.1_3237085_3238048_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134239.1_3238049_3238262_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134239.1_3238369_3238891_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134239.1_3238926_3240312_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134239.1_3240485_3240980_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134239.1_3240982_3241705_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134239.1_3241822_3242332_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134239.1_3242328_3243396_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134239.1_3243590_3244484_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134239.1_3244480_3245296_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134239.1_3245306_3246566_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134239.1_3246575_3248243_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134239.1_3248559_3249609_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134239.1_3249630_3250866_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134239.1_3250876_3251662_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|LR134239.1_3251889_3253035_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|LR134239.1_3253056_3254358_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|LR134239.1_3254414_3255776_-	PRK08044, PRK08044, allantoinase AllB
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	9	3381947-3382091	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|357aa|up_9|LR134239.1_3367085_3368156_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|LR134239.1_3368248_3368830_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|LR134239.1_3368834_3370652_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|LR134239.1_3370807_3372181_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|LR134239.1_3372256_3373576_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|LR134239.1_3373982_3375278_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|LR134239.1_3375335_3376025_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|LR134239.1_3376214_3377417_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|LR134239.1_3377413_3380560_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|423aa|up_0|LR134239.1_3380601_3381870_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|LR134239.1_3382114_3383023_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|326aa|down_1|LR134239.1_3383081_3384059_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|40aa|down_2|LR134239.1_3384419_3384539_+	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional	NA|95aa|down_3|LR134239.1_3384705_3384990_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|LR134239.1_3385061_3385739_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|LR134239.1_3385996_3386188_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|LR134239.1_3386237_3386762_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|LR134239.1_3386944_3387403_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|LR134239.1_3387522_3388332_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|LR134239.1_3388348_3389464_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCA_900636235.1_39610_B01	LR134239	Escherichia coli strain NCTC9100 genome assembly, chromosome: 1	10	3741983-3742124	10	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|96aa|up_9|LR134239.1_3730975_3731263_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|LR134239.1_3731259_3732546_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|LR134239.1_3732596_3733538_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|LR134239.1_3733552_3734323_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|LR134239.1_3734794_3736309_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|LR134239.1_3736339_3737482_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|LR134239.1_3737610_3738828_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|LR134239.1_3738901_3740455_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|LR134239.1_3740563_3741349_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|LR134239.1_3741354_3741945_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|LR134239.1_3742153_3742549_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|LR134239.1_3742810_3746032_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|LR134239.1_3746049_3747198_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|LR134239.1_3747653_3748475_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|LR134239.1_3748641_3749556_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|LR134239.1_3749621_3750572_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|LR134239.1_3750573_3751023_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|LR134239.1_3751147_3751642_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|LR134239.1_3751641_3754458_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|LR134239.1_3754500_3755442_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
