The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134242	Staphylococcus epidermidis strain NCTC4133 genome assembly, chromosome: 1	2430678	892880	904943	2430678	integrase,terminase,transposase	Staphylococcus_phage(56.25%)	18	894828:894845	907034:907051
VED27095.1|892880_893168_+	co-chaperonin GroES	NA	A0A221S4A5	uncultured_virus	43.0	6.2e-14
VED27097.1|893222_894845_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.5	7.6e-157
894828:894845	attL	ATGCCTGGTATGATGTAA	NA	NA	NA	NA
VED27099.1|894913_896089_-|integrase	mobile element-associated integrase, putative	integrase	A0A2H4JBC4	uncultured_Caudovirales_phage	95.1	1.3e-211
VED27101.1|896102_896777_-	mobile element-associated transcriptional regulator, putative	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	46.2	9.2e-40
VED27103.1|896949_897168_+	mobile element-associated transcriptional regulator, putative	NA	A0A2H4JB11	uncultured_Caudovirales_phage	63.9	2.2e-19
VED27105.1|897172_897490_+	mobile element-associated transcriptional regulator, putative	NA	A0A1W6JQE0	Staphylococcus_phage	91.2	8.9e-46
VED27107.1|897486_897624_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED27109.1|897625_898045_+	pathogenicity island protein	NA	NA	NA	NA	NA
VED27111.1|898044_898344_+	pathogenicity island protein	NA	A0A2H4JB50	uncultured_Caudovirales_phage	53.5	2.8e-25
VED27113.1|898434_899304_+	putative phage primase	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	69.6	1.2e-113
VED27115.1|899316_900804_+	pathogenicity island protein	NA	A0A1W6JQD6	Staphylococcus_phage	87.4	1.1e-255
VED27117.1|901076_901439_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	80.0	6.0e-54
VED27119.1|901440_902082_+|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	77.0	8.0e-94
VED27121.1|902492_902834_+	pathogenicity island protein	NA	A0A1W6JQF3	Staphylococcus_phage	61.5	7.1e-33
VED27123.1|902863_903514_+	Uncharacterised protein	NA	Q4ZE82	Staphylococcus_phage	39.7	2.0e-39
VED27125.1|903575_904034_+	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	58.9	3.9e-34
VED27127.1|904036_904378_+|transposase	transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	33.0	1.5e-11
VED27129.1|904382_904943_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	60.2	1.8e-57
907034:907051	attR	ATGCCTGGTATGATGTAA	NA	NA	NA	NA
>prophage 2
LR134242	Staphylococcus epidermidis strain NCTC4133 genome assembly, chromosome: 1	2430678	1025820	1062304	2430678	tRNA	Staphylococcus_phage(96.15%)	32	NA	NA
VED27357.1|1025820_1027230_+	O-succinylbenzoic acid-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.0	1.1e-172
VED27359.1|1027219_1028233_+	o-succinylbenzoic acid synthetase	NA	A0A2H4PQM0	Staphylococcus_phage	55.9	5.7e-102
VED27361.1|1028216_1028456_-	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	90.1	8.8e-38
VED27363.1|1028516_1028990_+	MutT/NUDIX hydrolase family protein	NA	A0A2H4PQM4	Staphylococcus_phage	62.4	8.1e-51
VED27365.1|1028976_1029750_+	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	76.5	4.0e-108
VED27367.1|1030224_1031817_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	90.4	9.7e-290
VED27369.1|1032194_1033394_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	86.9	4.0e-195
VED27371.1|1033513_1034422_+	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	79.8	2.8e-108
VED27373.1|1034574_1035411_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	69.1	3.7e-107
VED27375.1|1035470_1035830_-	CrcB family protein	NA	NA	NA	NA	NA
VED27377.1|1035826_1036189_-	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	65.0	3.4e-33
VED27379.1|1036328_1036634_-	membrane protein	NA	NA	NA	NA	NA
VED27381.1|1036889_1037603_+	Transaldolase	NA	M1PR54	Cyanophage	34.8	3.2e-19
VED27383.1|1037804_1038260_+	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	58.5	1.4e-23
VED27385.1|1038234_1038681_-	comK family protein	NA	NA	NA	NA	NA
VED27387.1|1038685_1039174_-	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	52.0	7.1e-34
VED27389.1|1039366_1039591_+	putative staphylococcal protein	NA	NA	NA	NA	NA
VED27391.1|1039853_1040708_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JNR1	Staphylococcus_phage	42.3	2.2e-38
VED27393.1|1041029_1042529_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	82.5	4.7e-20
VED27395.1|1043020_1044064_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	67.1	1.3e-138
VED27397.1|1044070_1044703_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	73.8	4.8e-83
VED27399.1|1044717_1045899_+	riboflavin biosynthesis protein	NA	A0A2H4PQS2	Staphylococcus_phage	77.6	3.9e-179
VED27401.1|1045911_1046370_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	86.7	1.7e-61
VED27403.1|1046665_1047667_-	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	78.0	2.9e-143
VED27405.1|1047899_1048727_+	lysophospholipase	NA	NA	NA	NA	NA
VED27407.1|1049130_1049532_+	repressor of toxins	NA	NA	NA	NA	NA
VED27409.1|1049585_1050149_-	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	70.3	9.0e-73
VED27411.1|1050145_1051099_-	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	84.0	3.0e-68
VED27413.1|1051205_1052396_+	drug transporter	NA	A0A2H4PQR6	Staphylococcus_phage	79.1	9.1e-176
VED27415.1|1052679_1055094_+|tRNA	leucyl-tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.5	0.0e+00
VED27417.1|1055117_1055429_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	65.0	8.5e-33
VED27419.1|1055734_1062304_+	cell wall surface anchor family protein	NA	A0A2H4PQU6	Staphylococcus_phage	48.5	2.4e-124
>prophage 3
LR134242	Staphylococcus epidermidis strain NCTC4133 genome assembly, chromosome: 1	2430678	1186515	1195540	2430678	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
VED27635.1|1186515_1187520_+	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	30.8	2.0e-06
VED27637.1|1187521_1188547_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VED27639.1|1188568_1189708_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.1	1.4e-85
VED27642.1|1189723_1189984_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	42.6	3.3e-06
VED27644.1|1190323_1192603_+	bifunctional preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	33.7	3.1e-31
VED27646.1|1192724_1195007_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	9.6e-65
VED27648.1|1195021_1195540_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	7.3e-29
>prophage 4
LR134242	Staphylococcus epidermidis strain NCTC4133 genome assembly, chromosome: 1	2430678	1749091	1757561	2430678		Synechococcus_phage(33.33%)	9	NA	NA
VED28712.1|1749091_1749658_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.3	2.7e-29
VED28714.1|1749660_1750689_-	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	45.0	2.7e-67
VED28716.1|1750681_1752166_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.8	1.7e-46
VED28718.1|1752144_1754334_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	37.8	4.0e-137
VED28720.1|1754326_1754998_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
VED28722.1|1754999_1755260_-	phosphoribosylformylglycinamidine synthase, PurS protein	NA	NA	NA	NA	NA
VED28724.1|1755259_1755964_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	43.8	1.5e-48
VED28726.1|1755964_1757092_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
VED28728.1|1757078_1757561_-	phosphoribosylaminoimidazole carboxylase PurE	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	4.4e-20
>prophage 5
LR134242	Staphylococcus epidermidis strain NCTC4133 genome assembly, chromosome: 1	2430678	1981263	1993011	2430678		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
VED29209.1|1981263_1982232_-	FecCD transport family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.7	3.4e-144
VED29211.1|1982457_1983432_-	ribonucleotide reductase of class Ib (aerobic), beta subunit	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	96.3	1.1e-179
VED29213.1|1983676_1985782_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	93.7	0.0e+00
VED29216.1|1985744_1986143_-	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	78.8	2.4e-56
VED29218.1|1986940_1987807_+	Integral membrane domain protein	NA	NA	NA	NA	NA
VED29220.1|1987830_1988331_+	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	64.9	3.8e-51
VED29222.1|1988665_1990171_+	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	31.7	1.2e-55
VED29224.1|1990320_1991250_+	putative diacylglycerol kinase protein	NA	NA	NA	NA	NA
VED29226.1|1991331_1991868_-	putative 5'(3')-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	2.9e-28
VED29228.1|1991955_1993011_-	histidinol-phosphate aminotransferase	NA	A0A0H3TLT9	Faustovirus	27.4	5.7e-20
>prophage 6
LR134242	Staphylococcus epidermidis strain NCTC4133 genome assembly, chromosome: 1	2430678	2005788	2012991	2430678		Pandoravirus(14.29%)	8	NA	NA
VED29252.1|2005788_2006937_-	para-aminobenzoate synthase component	NA	S4VNU7	Pandoravirus	40.1	1.9e-24
VED29254.1|2006920_2007514_-	para-aminobenzoate synthase, glutamine amidotransferase, component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.4	2.9e-37
VED29256.1|2007838_2008510_+	exoenzyme S synthesis protein B	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.1	2.2e-65
VED29258.1|2008511_2008931_+	6-pyruvoyl tetrahydrobiopterin synthase	NA	S4U060	uncultured_phage	26.9	1.7e-07
VED29260.1|2008930_2009644_+	radical activating enzyme	NA	E7DN68	Pneumococcus_phage	42.7	6.5e-52
VED29262.1|2009746_2010346_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED29264.1|2010812_2011919_-	glucosyl transferase	NA	A8CG95	Salmonella_phage	41.0	1.4e-61
VED29266.1|2012148_2012991_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.7	2.6e-52
>prophage 7
LR134242	Staphylococcus epidermidis strain NCTC4133 genome assembly, chromosome: 1	2430678	2350640	2367090	2430678	terminase,transposase	Staphylococcus_phage(70.59%)	25	NA	NA
VED29896.1|2350640_2351162_-|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	63.2	1.1e-56
VED29898.1|2351166_2351508_-	pathogenicity island protein ORF6	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	36.4	4.8e-13
VED29900.1|2351510_2351969_-	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	59.3	1.8e-34
VED29902.1|2352030_2352684_-	Uncharacterised protein	NA	Q4ZE82	Staphylococcus_phage	40.2	7.3e-42
VED29904.1|2352713_2353055_-	pathogenicity island protein	NA	A0A1W6JQF3	Staphylococcus_phage	62.4	1.4e-33
VED29906.1|2353619_2354261_-|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	75.1	5.9e-89
VED29908.1|2354257_2354608_-	Phage protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	72.5	2.0e-38
VED29910.1|2354878_2357131_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	75.5	0.0e+00
VED29912.1|2357227_2357533_-	bovine pathogenicity island protein Orf16	NA	Q4ZE75	Staphylococcus_phage	66.3	2.4e-32
VED29914.1|2357532_2357895_-	pathogenicity island protein	NA	NA	NA	NA	NA
VED29916.1|2357896_2358109_-	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	59.7	1.9e-15
VED29918.1|2358110_2358266_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED29920.1|2358278_2358551_-	pathogenicity island DNA-binding protein	NA	Q4ZE77	Staphylococcus_phage	40.0	1.7e-16
VED29922.1|2358551_2358716_-	putative DNA-binding protein	NA	NA	NA	NA	NA
VED29924.1|2358920_2359682_+	helix-turn-helix DNA binding protein	NA	Q8SDV8	Staphylococcus_phage	41.0	5.7e-06
VED29926.1|2359705_2360929_+	Integrase	NA	Q4ZE80	Staphylococcus_phage	79.3	6.5e-177
VED29928.1|2361155_2361398_-	30S ribosomalprotein S18p	NA	NA	NA	NA	NA
VED29930.1|2361442_2361958_-	single-strand DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	73.1	2.7e-60
VED29932.1|2361979_2362276_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
VED29934.1|2362651_2363473_+	1,4-beta-N-acetylmuramidase	NA	A0A291I9H5	Lactobacillus_phage	46.4	1.8e-37
VED29936.1|2363534_2363726_+	Uncharacterised protein	NA	U3PCX8	Staphylococcus_phage	81.7	2.2e-23
VED29937.1|2363891_2364989_-	GTP-binding and nucleic acid-binding protein YchF	NA	NA	NA	NA	NA
VED29939.1|2365000_2365204_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VED29941.1|2365224_2366103_-	potassium efflux system KefA protein/Small-conductance mechanosensitive channel	NA	NA	NA	NA	NA
VED29943.1|2366250_2367090_-	transcription terminator	NA	A0A1C9EHW0	Gordonia_phage	33.8	4.5e-12
