The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	43830	65924	4984892	transposase,integrase,tRNA	Shigella_phage(22.22%)	18	45735:45794	70095:72368
VED40899.1|43830_44169_+|transposase	transposase IS3/IS911 family protein	transposase	U5P4I9	Shigella_phage	92.5	4.2e-33
VED40901.1|44088_45240_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	37.0	1.2e-42
45735:45794	attL	GTGTGCCCGGAGTTCAGGGCGGGCATGGATGCTTAAATGAACCGCGAGTCTGTCTGGAAT	NA	NA	NA	NA
VED40903.1|46390_47914_+	reverse transcriptase-like protein from prophage or plasmid	NA	A0A0U4J920	Pseudomonas_phage	31.6	1.4e-43
VED40905.1|48078_48360_+|transposase	ISEhe3, transposase orfB	transposase	U5P429	Shigella_phage	96.1	2.2e-35
VED40907.1|48390_48774_+|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
VED40909.1|48770_49118_+	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
VED40912.1|49167_50703_+|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	87.7	2.0e-260
VED40915.1|50844_52011_+	ISEhe3 orfB	NA	NA	NA	NA	NA
VED40917.1|52021_52399_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED40919.1|52443_52719_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED40921.1|52769_53960_-|integrase	integrase family protein	integrase	Q7M297	Enterobacteria_phage	68.7	2.5e-157
VED40923.1|54509_55892_+	putative carbohydrate transporter	NA	NA	NA	NA	NA
VED40925.1|55901_58220_+	putative glycosyl hydrolase	NA	NA	NA	NA	NA
VED40927.1|58272_59982_-	AsmA family protein	NA	NA	NA	NA	NA
VED40929.1|60102_61494_-	purine permease yicE	NA	H9YQ34	environmental_Halophage	100.0	1.4e-71
VED40931.1|61773_62979_+	sodium/glutamate symport carrier protein (glutamate permease)	NA	NA	NA	NA	NA
VED40933.1|63147_65229_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
VED40935.1|65234_65924_-|tRNA	tRNA (guanosine-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
70095:72368	attR	GTGTGCCCGGAGTTCAGGGCGGGCATGGATGCTTAAATGAACCGCGAGTCTGTCTGGAATATTGAACCGGTAACTCACGATGAGAACCCCAACAATCCCACCGGGTGTGACGGTGGAGAACCTGAGCGGCAGTGACCTGCGGCATGCCCGCAGGGTGATGTAACCCGCTGACAACGGGGATTGAGGCGAGATCACTAAGCCGAGATGATCCTCAAGGTTAAGTACTGAAAGGCTGAAGAACATGAACCCGTTAATCCGCCTCTGTGGGTTGAAAACGTCACCACGGCCTACGTGATCTGACAGGCCGTGCAGGAGGAACTGGCAGTGATACGTAAGCACTGCCGGTCGAAGGTGTTTTGACATGTATGCGAAACACCGGGGCAGCAGCGTCTATCACGCTTGCGTTGCTGACTTCTGCCAACTTGCGGCAAGCAAGGATAAAGAGTGCGACGGGCAGCCTCCTCAGTATGCCTGAGTCCAGGCAGGTAAACCGGGGAAGGTCAGCGACGGATGTTAAGGGGGCATGGCTCCGATGACGCGCTGGCTGGCGGAGCTTCCGTAGTAGTCCGCGATGGGGAAAGCCCATTACATGGCGAAGGGAAGCAGTTTGAATGTGTTTGCGACGTGAATTAACTGACCTAACGAGGTGAAGACCTTTGATAATCAGCGAAATGCAACGCAAGCTTGCCACATGGGCAGCCACCGATCCGTCCCTACGGATTCAACGGCTGCTGCGTCTGATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCGCATACCCCCGGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCAGACTGGCTGTTGAGCTGCAAATCCTCAGGGATGAATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACTGCGACCACTGGGTATCCCCGCGTTGCGGGATCGTATTGTTCAGCGGGCCATGCTGATGGCGATGGAGCCGATATGGGAGAGTGATTTTCATACGCTCTCATATGGCTTCCGGCCTGAGCGCAGTGTCCACCACGCGATCCGCACGGTGAAATTACAGCTCACAGACTGCGGTGAAACCCGGGGACGCTGGGTGATTGAAGGCGACCTGTCCAGTTACTTCGACACCGTACATCATCGACTGCTGATGAAGGCTGTACGCCGCAGGATCAGTGACGCACGTTTCATGACTCTGCTGTGGAAAACCATCAAGGCGGGACATATCGATGTCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCACAGGCGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGACTAAAATCACCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGATCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATCAGGCAACTACAGTGAAAGCAAAGTCGATATGGCTGAACAACTCAACCGAAAACTGAAAGGCTGGGCCATGTTCTATAAGTTCGTTGATTTTAAGGCCAAAGTCTTCAGTTATATCGACCGTGTCGTGTTCTGGAAGCTGGCTCACTGGCTGGCCCGCAAATACCGTACAGGTATCGCTTCCCTGATGAGGTGGTGGTGTAAATCACCGAAACCGGGTCAGAGCAAAACGTGGGTTTTATTTGGTAAAACCAATCACGGCAAGCTCAGCGGCGAAATACTGTACCGGTTGGTGGGGCAAGGCAAGAAGCTGTTCCGCTGGCGGCTACCCGAAGGTAATCCCTATCTGAGGACGGAGACCAGAAACACGTATACATCGCGCTTTACAGAAGTGGCAATGGCGTTCGCCAGCATTTAAATGGAGAGCCGGATGCGCTGAAAGGTGCACGTCCGGTTCGGGGAGGAGAGGCAGGGAAATAGTCCGACTACGCCCTGCCTCTTACTCTACTCAG	NA	NA	NA	NA
>prophage 2
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	1067024	1080504	4984892	transposase,tRNA	Escherichia_phage(60.0%)	13	NA	NA
VED43040.1|1067024_1067504_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	54.1	2.6e-28
VED43043.1|1067643_1068408_+	lipoprotein NlpD	NA	A0A1C9LWW7	Streptomyces_phage	40.2	4.9e-05
VED43045.1|1068446_1069427_-|transposase	IS5 transposase and trans-activator	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
VED43047.1|1069472_1069826_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED43050.1|1070044_1071037_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
VED43052.1|1071130_1072495_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
VED43055.1|1072583_1073360_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
VED43058.1|1073364_1074003_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
VED43060.1|1073999_1075262_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
VED43062.1|1075258_1076167_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.5	3.0e-118
VED43064.1|1076362_1077130_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
VED43067.1|1077180_1077837_-	serine/threonine-specific protein phosphatase 2	NA	A0A222YWF0	Escherichia_phage	46.3	6.2e-49
VED43069.1|1077942_1080504_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 3
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	1396893	1459806	4984892	transposase,tRNA	Clostridioides_phage(20.0%)	57	NA	NA
VED43836.1|1396893_1398309_+|tRNA	glutamyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VED43841.1|1398360_1398732_-	putative regulatory protein	NA	NA	NA	NA	NA
VED43846.1|1398754_1399114_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VED43850.1|1399733_1401923_+	putative diguanylate cyclase	NA	NA	NA	NA	NA
VED43854.1|1401972_1403175_-	nucleoside permease nupC	NA	NA	NA	NA	NA
VED43856.1|1403510_1404749_+	manganese transport protein	NA	NA	NA	NA	NA
VED43858.1|1404889_1405216_-	protein	NA	NA	NA	NA	NA
VED43860.1|1405330_1406587_-	putative voltage gated chloride channel protein	NA	NA	NA	NA	NA
VED43862.1|1406790_1407756_+	glucokinase	NA	NA	NA	NA	NA
VED43864.1|1407974_1408301_+	PTS system IIB component ypdH	NA	NA	NA	NA	NA
VED43866.1|1408322_1409570_+	fructose-like specific PTS system EIIC component 1	NA	NA	NA	NA	NA
VED43869.1|1409584_1410670_+	aminopeptidase	NA	NA	NA	NA	NA
VED43871.1|1410669_1411707_+	aminopeptidase	NA	NA	NA	NA	NA
VED43873.1|1411731_1414227_+	multiphosphoryl transfer protein 1 [includes phosphoenolpyruvate-protein phosphotransferase;phosphocarrier protein Hp; fructose-like phosphotransferase enzyme IIA component]	NA	NA	NA	NA	NA
VED43875.1|1414229_1415087_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VED43877.1|1415099_1415834_-	putative response regulator in two-component system with YpdA	NA	A0A2R2ZGH8	Clostridioides_phage	25.4	3.6e-13
VED43879.1|1415848_1417546_-	two-component system sensor kinase	NA	NA	NA	NA	NA
VED43881.1|1417921_1419160_+	putative aminotransferase	NA	NA	NA	NA	NA
VED43883.1|1419235_1419613_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED43885.1|1419657_1419933_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED43887.1|1420427_1421348_-	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	NA	A0A1W6JP29	Morganella_phage	54.8	4.9e-76
VED43888.1|1421700_1421943_+	inner membrane protein	NA	NA	NA	NA	NA
VED43890.1|1422019_1422295_-	putative lipoprotein involved in colanic acid biosynthesis	NA	NA	NA	NA	NA
VED43892.1|1422657_1422933_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED43894.1|1422977_1423355_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED43896.1|1423382_1424003_+	protein	NA	NA	NA	NA	NA
VED43898.1|1424515_1425157_+	putative transferase	NA	NA	NA	NA	NA
VED43900.1|1425107_1425767_+	putative transferase	NA	NA	NA	NA	NA
VED43902.1|1425820_1427515_+	oxalyl-CoA decarboxylase	NA	E5ERI2	Ostreococcus_lucimarinus_virus	23.6	1.4e-23
VED43906.1|1427584_1428529_+	transporter YfdV	NA	NA	NA	NA	NA
VED43908.1|1428602_1429748_+	CoA-transferase	NA	NA	NA	NA	NA
VED43910.1|1429803_1433397_-	hybrid sensory histidine kinase in two-component regulatory system with EvgA	NA	W8CYM9	Bacillus_phage	40.0	1.1e-09
VED43912.1|1433401_1434016_-	DNA-binding transcriptional activator EvgA	NA	NA	NA	NA	NA
VED43914.1|1434431_1435595_+	EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component	NA	NA	NA	NA	NA
VED43916.1|1435594_1437133_+	multidrug resistance protein Y	NA	NA	NA	NA	NA
VED43918.1|1437240_1438569_-	D-serine dehydratase	NA	NA	NA	NA	NA
VED43920.1|1438586_1439045_-	permease DsdX	NA	NA	NA	NA	NA
VED43922.1|1439004_1439925_-	permease DsdX	NA	NA	NA	NA	NA
VED43924.1|1440142_1441078_+	DNA-binding transcriptional regulator DsdC	NA	NA	NA	NA	NA
VED43926.1|1441323_1442256_-	transporter protein	NA	E7DYY8	Enterobacteria_phage	99.0	2.5e-165
VED43928.1|1442549_1443305_+	lipoprotein	NA	NA	NA	NA	NA
VED43930.1|1443486_1444545_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED43932.1|1444910_1446251_-	long-chain fatty acid transport protein	NA	NA	NA	NA	NA
VED43934.1|1446622_1446907_+	protein YfcZ	NA	NA	NA	NA	NA
VED43936.1|1447087_1448398_+	fatty acid oxidation comple beta subunit (3 -ketoacyl-CoA thiolase)	NA	NA	NA	NA	NA
VED43938.1|1448397_1450542_+	fatty acid oxidation complex alpha subunit [includes: enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase]	NA	NA	NA	NA	NA
VED43940.1|1450744_1451230_+	phosphohistidine phosphatase	NA	NA	NA	NA	NA
VED43942.1|1451910_1452474_+	fimbrial-like adhesin protein	NA	NA	NA	NA	NA
VED43944.1|1452555_1454661_+	fimbrial outer membrane usher protein StfC	NA	NA	NA	NA	NA
VED43946.1|1454623_1455202_+	outer membrane export usher protein	NA	NA	NA	NA	NA
VED43948.1|1455221_1455974_+	chaperone protein PapD	NA	NA	NA	NA	NA
VED43950.1|1455973_1456486_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA	NA
VED43952.1|1456482_1456971_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA	NA
VED43954.1|1456967_1457507_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA	NA
VED43956.1|1457508_1458330_+	putative fimbrial adhesin YfcO precursor	NA	NA	NA	NA	NA
VED43958.1|1458416_1459418_+|transposase	transposase-like protein	transposase	NA	NA	NA	NA
VED43960.1|1459428_1459806_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 4
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	1542088	1567245	4984892	transposase	Pseudomonas_phage(22.22%)	26	NA	NA
VED44129.1|1542088_1542466_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED44131.1|1542510_1542786_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED44133.1|1542814_1543387_-	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase	NA	A0A075B8F6	Enterobacteria_phage	32.2	2.2e-18
VED44135.1|1543390_1544548_-	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase	NA	A0A2K9L470	Tupanvirus	29.8	1.5e-29
VED44137.1|1544837_1545440_+	phosphoglycerate mutase	NA	A0A2L1IV13	Escherichia_phage	42.9	4.4e-09
VED44139.1|1545478_1545904_-	NUDIX-family hydrolase	NA	NA	NA	NA	NA
VED44141.1|1546182_1546725_+	outer membrane porin protein	NA	NA	NA	NA	NA
VED44143.1|1546824_1548027_+	putative molybdopterin-binding protein	NA	NA	NA	NA	NA
VED44145.1|1548246_1549029_+	transcriptional regulator YfaX	NA	NA	NA	NA	NA
VED44147.1|1549043_1550249_+	mandelate racemase/muconate lactonizing protein	NA	Q6A202	Oenococcus_phage	28.3	1.2e-26
VED44149.1|1550305_1551595_+	transport protein YfaV	NA	NA	NA	NA	NA
VED44151.1|1551612_1552416_+	putative carbon-carbon lyase	NA	NA	NA	NA	NA
VED44153.1|1552456_1552642_-|transposase	putative transposase (fragment)	transposase	NA	NA	NA	NA
VED44155.1|1552654_1553554_-|transposase	putative transposase	transposase	Q2A0A7	Sodalis_phage	54.8	2.5e-69
VED44157.1|1553746_1554937_-	anaerobic glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA	NA
VED44159.1|1554933_1556193_-	anaerobic glycerol-3-phosphate dehydrogenase subunit B	NA	NA	NA	NA	NA
VED44161.1|1556182_1557811_-	anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA	NA	NA	NA	NA
VED44163.1|1558083_1559442_+	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
VED44165.1|1559446_1560523_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	46.0	3.0e-08
VED44167.1|1560564_1560771_-	yfaH	NA	NA	NA	NA	NA
VED44169.1|1560985_1561636_+	pH-inducible protein involved in stress response (putative kinase)	NA	NA	NA	NA	NA
VED44171.1|1561689_1561944_-	putative ferredoxin	NA	G9IAA2	Pseudomonas_phage	73.1	2.6e-24
VED44173.1|1561943_1563074_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	79.1	1.5e-175
VED44175.1|1563307_1565593_-	ribonucleoside-diphosphate reductase	NA	A0A2D1GNB1	Pseudoalteromonas_phage	63.6	2.5e-283
VED44177.1|1566547_1566823_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED44179.1|1566867_1567245_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 5
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	1692661	1702102	4984892		Enterobacteria_phage(85.71%)	10	NA	NA
VED44388.1|1692661_1693588_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
VED44390.1|1693592_1694324_+	ABC transporter permease	NA	NA	NA	NA	NA
VED44392.1|1694304_1694412_-	putative inner membrane protein	NA	NA	NA	NA	NA
VED44394.1|1694471_1695203_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
VED44396.1|1695424_1697110_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VED44398.1|1697106_1697826_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VED44400.1|1697872_1698343_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	5.2e-82
VED44402.1|1698382_1698844_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
VED44404.1|1698968_1700969_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
VED44406.1|1700965_1702102_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.7	1.9e-162
>prophage 6
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	1803090	1856036	4984892	transposase	Stx2-converting_phage(22.22%)	62	NA	NA
VED44573.1|1803090_1803807_+|transposase	transposase, IS4 family	transposase	NA	NA	NA	NA
VED44575.1|1804263_1804422_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED44577.1|1804418_1805015_+	dethiobiotin synthetase	NA	NA	NA	NA	NA
VED44579.1|1805035_1805386_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED44581.1|1805430_1806216_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED44583.1|1806212_1807331_+	lipopolysaccharide 1,2-N-acetylglucosamine transferase	NA	NA	NA	NA	NA
VED44585.1|1807412_1808048_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED44587.1|1808062_1808692_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED44589.1|1808754_1809621_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.0e-51
VED44591.1|1809617_1809917_-|transposase	transposase	transposase	NA	NA	NA	NA
VED44593.1|1810046_1810517_+	polysaccharide pyruvyl transferase-like protein	NA	NA	NA	NA	NA
VED44595.1|1810503_1810836_+	Exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
VED44597.1|1810966_1812373_+	6-phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	27.8	6.8e-37
VED44599.1|1812572_1813031_+|transposase	transposase	transposase	I4AZI8	Saccharomonospora_phage	32.3	2.9e-13
VED44601.1|1813331_1814498_+	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	51.9	1.9e-109
VED44603.1|1814663_1815032_+	CP4-6 prophage; partial regulator of insertion element IS911A	NA	Q716C1	Shigella_phage	97.7	4.2e-39
VED44605.1|1814988_1815753_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	NA	NA	NA	NA
VED44607.1|1815873_1816140_+|transposase	transposase, IS30	transposase	Q9MBM9	Staphylococcus_prophage	56.1	6.2e-16
VED44609.1|1816401_1816641_+	IS911 orfA	NA	Q716C2	Shigella_phage	98.3	1.5e-29
VED44611.1|1817232_1818756_+	reverse transcriptase-like protein from prophage or plasmid	NA	A0A0U4J920	Pseudomonas_phage	31.6	1.4e-43
VED44613.1|1818950_1819304_+|transposase	putative transposase subunit	transposase	Q716C2	Shigella_phage	99.1	7.3e-65
VED44615.1|1819372_1820353_+|transposase	IS5 transposase and trans-activator	transposase	Q38213	Escherichia_phage	99.4	4.7e-186
VED44617.1|1820599_1821577_+	regulator of length of O-antigen component of lipopolysaccharide chains	NA	NA	NA	NA	NA
VED44619.1|1821771_1822230_+|transposase	transposase	transposase	I4AZI8	Saccharomonospora_phage	32.3	2.9e-13
VED44621.1|1822870_1823155_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED44623.1|1823432_1824848_+	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	30.9	1.2e-54
VED44625.1|1824871_1826248_+	phosphomannomutase (PMM)	NA	A0A127AWJ1	Bacillus_phage	26.4	1.1e-31
VED44627.1|1826249_1827041_+	Integral membrane component of ABC-transporter	NA	NA	NA	NA	NA
VED44629.1|1827037_1827391_-|transposase	putative transposase subunit	transposase	Q716C2	Shigella_phage	99.1	7.3e-65
VED44631.1|1827585_1829109_-	reverse transcriptase-like protein from prophage or plasmid	NA	A0A0U4J920	Pseudomonas_phage	31.6	1.4e-43
VED44633.1|1829700_1829940_-	IS911 orfA	NA	Q716C2	Shigella_phage	98.3	1.5e-29
VED44635.1|1830382_1830817_+|transposase	transposase	transposase	Q6H9S5	Enterobacteria_phage	60.3	1.5e-19
VED44637.1|1830813_1831164_+|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	64.7	2.8e-40
VED44639.1|1831194_1832808_+|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	63.6	3.0e-182
VED44641.1|1833058_1833151_+	IS orf	NA	A0A0P0ZBY2	Stx2-converting_phage	100.0	5.0e-10
VED44643.1|1833172_1833406_+|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	100.0	3.8e-38
VED44645.1|1833455_1834994_+|transposase	putative transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	99.8	1.0e-299
VED44646.1|1835089_1835449_+	glycosyl transferase, group 1 family protein	NA	NA	NA	NA	NA
VED44648.1|1835487_1836096_-	histidine biosynthesis bifunctional protein [includes phosphoribosyl-AMP cyclohydrolase;phosphoribosyl-ATP pyrophosphatase]	NA	NA	NA	NA	NA
VED44650.1|1836089_1836866_-	imidazole glycerol phosphate synthase subunit	NA	NA	NA	NA	NA
VED44652.1|1836847_1837585_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	NA	NA	NA	NA	NA
VED44654.1|1837584_1838175_-	imidazole glycerol phosphate synthase subunit	NA	NA	NA	NA	NA
VED44656.1|1838174_1839242_-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase	NA	NA	NA	NA	NA
VED44659.1|1839241_1840312_-	histidinol-phosphate aminotransferase	NA	NA	NA	NA	NA
VED44661.1|1840308_1841613_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
VED44663.1|1841618_1842518_-	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	94.7	1.8e-11
VED44665.1|1842996_1843188_+	antitoxin YefM	NA	NA	NA	NA	NA
VED44667.1|1843243_1843498_+	toxin	NA	NA	NA	NA	NA
VED44669.1|1843580_1844405_+	protein YeeZ	NA	NA	NA	NA	NA
VED44671.1|1844429_1845380_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VED44673.1|1845646_1847005_+	putative amino acid permease	NA	NA	NA	NA	NA
VED44675.1|1847237_1848242_+	inner membrane protein	NA	NA	NA	NA	NA
VED44677.1|1848255_1848483_+	SirA family protein	NA	NA	NA	NA	NA
VED44679.1|1848525_1849953_-	exodeoxyribonuclease I	NA	NA	NA	NA	NA
VED44681.1|1850161_1851328_+	penicillin-binding protein 6B	NA	B6DZZ7	Stx2-converting_phage	98.7	1.9e-226
VED44683.1|1851446_1851920_+	DNA gyrase inhibitory protein	NA	NA	NA	NA	NA
VED44685.1|1852118_1853177_+	inner membrane protein	NA	NA	NA	NA	NA
VED44687.1|1853348_1853678_+	putative alpha helix protein	NA	NA	NA	NA	NA
VED44689.1|1853778_1854045_-	eutP/pduV family protein	NA	NA	NA	NA	NA
VED44691.1|1854234_1855014_-	insertion sequence IS100, ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
VED44693.1|1855013_1855757_-|transposase	transposase ORF A, IS100 (fragment)	transposase	A0A2L1IVA1	Escherichia_phage	98.8	5.2e-145
VED44695.1|1855772_1856036_-|transposase	transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.1e-41
>prophage 7
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	1872373	1891086	4984892	transposase	Stx2-converting_phage(28.57%)	23	NA	NA
VED44735.1|1872373_1872757_+|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
VED44737.1|1872753_1873101_+	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
VED44739.1|1873150_1874686_+|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	87.7	2.0e-260
VED44741.1|1875281_1876139_+|transposase	transposase	transposase	NA	NA	NA	NA
VED44743.1|1876790_1877825_-	phosphotriesterase	NA	NA	NA	NA	NA
VED44745.1|1877827_1878514_-	Putative inner membrane protein	NA	NA	NA	NA	NA
VED44747.1|1879797_1880106_-	Putative inner membrane protein	NA	NA	NA	NA	NA
VED44749.1|1880162_1880564_-	cytoplasmic protein	NA	NA	NA	NA	NA
VED44751.1|1880583_1881390_-|transposase	transposase, IS30	transposase	W5R8L2	Staphylococcus_phage	36.1	1.1e-34
VED44753.1|1881600_1882467_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VED44755.1|1882463_1882763_-|transposase	transposase	transposase	NA	NA	NA	NA
VED44757.1|1882848_1883172_+	(acyl-carrier-protein) S-malonyltransferase-like protein	NA	NA	NA	NA	NA
VED44759.1|1883168_1884155_+	inner membrane protein	NA	NA	NA	NA	NA
VED44761.1|1885030_1885969_+	dehydrogenase	NA	NA	NA	NA	NA
VED44763.1|1886023_1886761_+	putative phosphoesterase	NA	NA	NA	NA	NA
VED44765.1|1886784_1887339_+	putative chaperone	NA	NA	NA	NA	NA
VED44767.1|1887410_1887932_+	inner membrane protein YcdZ	NA	NA	NA	NA	NA
VED44769.1|1887995_1888829_-	curli production assembly/transport component	NA	M1ICK2	Pelagibacter_phage	40.1	5.1e-40
VED44771.1|1888855_1889272_-	curli production assembly/transport component	NA	NA	NA	NA	NA
VED44773.1|1889296_1889686_-	curli production assembly/transport component	NA	NA	NA	NA	NA
VED44775.1|1889690_1890263_-	csgab operon transcriptional regulator	NA	NA	NA	NA	NA
VED44777.1|1890388_1890664_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED44779.1|1890708_1891086_+|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	100.0	1.3e-67
>prophage 8
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	2056501	2278097	4984892	tail,transposase,portal,capsid,terminase,head,protease,holin,plate,lysis,integrase	Enterobacteria_phage(31.93%)	295	2077275:2077290	2227231:2227246
VED45111.1|2056501_2056879_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45112.1|2056923_2057199_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45113.1|2057330_2058053_+	patatin	NA	NA	NA	NA	NA
VED45114.1|2058144_2059158_+	orphan two-component response regulator	NA	NA	NA	NA	NA
VED45115.1|2059359_2060268_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	46.8	1.4e-59
VED45116.1|2060411_2060825_-	H-NS histone family protein	NA	NA	NA	NA	NA
VED45117.1|2061429_2062047_+	thymidine kinase	NA	A0A0A0YP64	Citrobacter_phage	53.6	1.3e-53
VED45118.1|2062328_2062919_-|transposase	transposase, IS4 family protein	transposase	NA	NA	NA	NA
VED45119.1|2063039_2063225_-|transposase	transposase	transposase	NA	NA	NA	NA
VED45120.1|2063348_2066024_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
VED45121.1|2066500_2067148_+	MarC family integral membrane protein	NA	NA	NA	NA	NA
VED45123.1|2067174_2067330_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45125.1|2067305_2067467_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45127.1|2067840_2069517_+	periplasmic oligopeptide-binding protein	NA	NA	NA	NA	NA
VED45129.1|2069602_2070523_+	oligopeptide ABC transporter	NA	NA	NA	NA	NA
VED45131.1|2070537_2071446_+	oligopeptide ABC transporter permease	NA	NA	NA	NA	NA
VED45133.1|2071457_2072471_+	oligopeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.7	2.0e-14
VED45135.1|2072467_2073472_+	oligopeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.7	2.3e-15
VED45137.1|2073524_2073854_-	dsDNA-mimic protein	NA	NA	NA	NA	NA
VED45139.1|2073888_2075349_-	cardiolipin synthetase	NA	NA	NA	NA	NA
VED45141.1|2075719_2076973_-	voltage-gated potassium channel	NA	NA	NA	NA	NA
2077275:2077290	attL	AGAACACTTTCTTAAA	NA	NA	NA	NA
VED45143.1|2077477_2078671_+|integrase	integrase	integrase	K7PGY1	Enterobacteria_phage	100.0	1.3e-235
2077275:2077290	attL	AGAACACTTTCTTAAA	NA	NA	NA	NA
VED45145.1|2078906_2079149_-	Uncharacterised protein	NA	M9P0E0	Enterobacteria_phage	98.8	1.2e-37
VED45146.1|2079148_2080054_-	putative DNA methyltransferase	NA	A0A0M4R347	Salmonella_phage	84.6	4.0e-139
VED45148.1|2080050_2080209_-	Xis	NA	A0A1U8QQC1	Enterobacteria_phage	54.9	4.3e-09
VED45150.1|2080205_2080634_-	regulatory protein	NA	M9NYX4	Enterobacteria_phage	95.1	2.9e-71
VED45152.1|2080630_2081248_-	exonuclease	NA	A0A0S2SY31	Pseudomonas_phage	58.8	1.1e-60
VED45154.1|2081244_2081991_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	65.8	1.8e-65
VED45156.1|2082009_2082294_-	Uncharacterised protein	NA	G8C7T1	Escherichia_phage	92.6	8.5e-48
VED45158.1|2082301_2083273_-	phage-like protein	NA	M9P0E1	Enterobacteria_phage	98.8	2.7e-85
VED45160.1|2083343_2083553_-	FtsZ inhibitor protein	NA	M9NZE2	Enterobacteria_phage	95.7	2.0e-33
VED45162.1|2083549_2083708_-	Uncharacterised protein	NA	M9NZI5	Enterobacteria_phage	100.0	6.9e-23
VED45164.1|2083704_2084085_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45166.1|2084246_2084915_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45168.1|2084972_2085185_-	Uncharacterised protein	NA	K7P7B4	Enterobacteria_phage	100.0	5.4e-31
VED45170.1|2085646_2086399_-	Repressor protein CII	NA	A0A286S2B2	Klebsiella_phage	64.4	5.4e-73
VED45172.1|2086440_2086674_+	antirepressor protein Cro	NA	A0A0P0ZDD7	Stx2-converting_phage	62.3	2.6e-18
VED45174.1|2086691_2087234_+	bacteriophage regulatory protein CII	NA	M9NZI6	Enterobacteria_phage	78.3	6.0e-74
VED45176.1|2087323_2087470_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45178.1|2087462_2088362_+	replication protein O	NA	A0A0N7C1Z7	Escherichia_phage	54.7	1.2e-79
VED45180.1|2088351_2089785_+	P protein; replicative DNA helicase	NA	Q716D2	Shigella_phage	86.9	2.3e-229
VED45182.1|2089784_2090129_+	Ren protein from phage origin	NA	G8C7U7	Escherichia_phage	94.7	2.5e-54
VED45184.1|2090125_2090323_+	Uncharacterised protein	NA	K7PKS4	Enterobacteria_phage	100.0	2.6e-27
VED45186.1|2090319_2090709_+	Uncharacterised protein	NA	K7P6V8	Enterobacteria_phage	97.6	6.7e-35
VED45188.1|2090701_2090902_+	Uncharacterised protein	NA	K7P6F8	Enterobacteria_phage	100.0	5.6e-30
VED45190.1|2090901_2091519_+	putative prophage protein	NA	K7P7E4	Enterobacteria_phage	86.5	1.1e-68
VED45192.1|2091520_2091958_-	Uncharacterised protein	NA	A0A222YWI5	Escherichia_phage	41.1	2.8e-13
VED45194.1|2092326_2092782_+	DLP12 prophage; DNA base-flipping protein	NA	K7P7B8	Enterobacteria_phage	99.3	6.3e-85
VED45196.1|2092781_2092952_+	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	100.0	1.1e-23
VED45198.1|2092948_2093617_+	serine/threonine-protein phosphatase	NA	K7P6H8	Enterobacteria_phage	100.0	2.0e-132
VED45200.1|2093609_2093894_+	prophage protein	NA	G8C7V5	Escherichia_phage	95.7	9.4e-47
VED45202.1|2093890_2094250_+	Holliday junction resolvase	NA	G8C7V6	Escherichia_phage	61.3	2.0e-41
VED45204.1|2094359_2095049_+	Putative antiterminator Q	NA	I6PDF8	Cronobacter_phage	51.1	1.1e-56
VED45206.1|2095246_2095522_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45208.1|2096372_2096651_+	Uncharacterised protein	NA	K7PGZ9	Enterobacteria_phage	100.0	6.0e-46
VED45210.1|2096622_2097168_+	membrane-associated lysozyme; Qin prophage	NA	K7PM52	Enterobacteria_phage	98.9	4.0e-102
VED45214.1|2097212_2097629_+|lysis	Rz lysis protein	lysis	M9NYX9	Enterobacteria_phage	59.9	7.1e-35
VED45219.1|2097661_2098066_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45224.1|2098142_2098823_+	Uncharacterised protein	NA	A0A1B0Z000	Pseudomonas_phage	32.1	8.7e-06
VED45226.1|2099021_2099513_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45227.1|2099531_2100092_+|terminase	Phage terminase large subunit (GpA)	terminase	A0A0E3U2N4	Fusobacterium_phage	35.8	9.7e-19
VED45229.1|2100565_2100766_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45231.1|2101239_2101647_+|terminase	Phage terminase large subunit (GpA)	terminase	G8EXZ6	Synechococcus_phage	44.4	2.0e-05
VED45233.1|2101942_2102725_+|portal	lambda family phage portal protein	portal	V5Q9I2	Xylella_phage	35.3	2.1e-35
VED45235.1|2103765_2104161_+	S49 family peptidase	NA	M4QNY7	Loktanella_phage	33.3	5.4e-08
VED45237.1|2104384_2104660_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45239.1|2104970_2105306_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45241.1|2105792_2105909_+|capsid	Phage major capsid protein E	capsid	NA	NA	NA	NA
VED45243.1|2106505_2106715_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45244.1|2106708_2106885_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45246.1|2106889_2107141_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45247.1|2107784_2107895_+	Protein of uncharacterised function (DUF2635)	NA	NA	NA	NA	NA
VED45249.1|2108269_2108524_+|tail	phage tail sheath protein	tail	NA	NA	NA	NA
VED45251.1|2109473_2109623_+|tail	Phage tail tube protein	tail	NA	NA	NA	NA
VED45253.1|2109603_2109846_+|tail	Phage tail tube protein	tail	NA	NA	NA	NA
VED45255.1|2109847_2110111_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45257.1|2110266_2110392_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45259.1|2110642_2111017_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45261.1|2111567_2112185_+	putative lytic transglycosylase, catalytic	NA	A0A0E3JPZ7	Enterobacteria_phage	44.3	1.9e-12
VED45262.1|2112216_2112465_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45264.1|2112527_2113931_+	Tail/DNA circulation protein	NA	NA	NA	NA	NA
VED45266.1|2113927_2114380_+	bacteriophage Mu P protein	NA	B5TK72	Pseudomonas_phage	35.3	1.3e-13
VED45268.1|2114668_2115016_+	bacteriophage Mu P protein	NA	NA	NA	NA	NA
VED45270.1|2115054_2115597_+	bacteriophage Mu Gp45 protein	NA	A0A077KAY0	Edwardsiella_phage	30.8	5.9e-05
VED45272.1|2115593_2116031_+	phage protein GP46	NA	B5TK74	Pseudomonas_phage	45.8	3.1e-12
VED45274.1|2116032_2117175_+|plate	baseplate J protein	plate	A0A0A8WEY6	Clostridium_phage	34.8	6.2e-12
VED45276.1|2117171_2117765_+|tail	putative phage tail protein	tail	NA	NA	NA	NA
VED45278.1|2117816_2118479_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45280.1|2118480_2118915_+	CPS-53 (KpLE1) prophage protein	NA	A0A0F7LDZ0	Escherichia_phage	53.8	5.0e-39
VED45282.1|2118886_2119312_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	37.7	5.3e-17
VED45284.1|2119722_2120271_+	site-specific DNA recombinase	NA	K7PJT4	Enterobacteria_phage	100.0	2.7e-98
VED45286.1|2120371_2121184_+	type I restriction-modification enzyme R subunit	NA	NA	NA	NA	NA
2120392:2120407	attR	AGAACACTTTCTTAAA	NA	NA	NA	NA
VED45287.1|2121448_2121955_-	putative morphogenetic protein	NA	Q71T77	Escherichia_phage	98.8	5.4e-93
2120392:2120407	attR	AGAACACTTTCTTAAA	NA	NA	NA	NA
VED45289.1|2122028_2123291_-	putative morphogenetic protein	NA	A0A1B0V7L1	Salmonella_phage	99.5	7.8e-234
VED45291.1|2123292_2123511_-	Uncharacterised protein	NA	Q71TI9	Escherichia_phage	100.0	3.4e-36
VED45293.1|2123601_2124294_-	Uncharacterised protein	NA	A0A077SLK3	Escherichia_phage	98.3	9.4e-141
VED45295.1|2124290_2124968_-	putative serine/threonine protein phosphatase	NA	Q71TJ1	Escherichia_phage	97.8	4.6e-132
VED45297.1|2124964_2125591_-	putative norphogenetic protein	NA	Q1MVG8	Enterobacteria_phage	100.0	2.1e-123
VED45299.1|2126092_2126248_-	putative norphogenetic protein	NA	Q1MVH0	Enterobacteria_phage	98.0	1.2e-19
VED45301.1|2126314_2126524_-	putative norphogenetic protein	NA	Q71T85	Escherichia_phage	100.0	1.7e-32
VED45303.1|2126782_2127286_+|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	95.2	4.2e-90
VED45305.1|2127338_2127488_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45307.1|2127533_2127719_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45309.1|2128159_2128663_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	95.2	4.2e-90
VED45311.1|2129418_2129931_-	plasmid transfer protein	NA	NA	NA	NA	NA
VED45313.1|2129933_2130464_-	plasmid transfer protein	NA	NA	NA	NA	NA
VED45315.1|2131491_2131977_+	plasmid transfer protein	NA	NA	NA	NA	NA
VED45317.1|2131973_2132102_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45319.1|2132089_2132695_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45321.1|2132705_2134427_+	conjugative transfer system protein	NA	NA	NA	NA	NA
VED45323.1|2134467_2135448_+|transposase	IS5 transposase and trans-activator	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
VED45325.1|2135548_2136157_-|transposase	transposase, IS30	transposase	NA	NA	NA	NA
VED45327.1|2136459_2136828_-	CP4-6 prophage; partial regulator of insertion element IS911A	NA	Q716C1	Shigella_phage	97.7	7.2e-39
VED45329.1|2136884_2137451_-	putative recombination associated protein	NA	Q71TA1	Escherichia_phage	99.5	1.3e-92
VED45331.1|2137443_2137728_-	Uncharacterised protein	NA	Q71TA2	Escherichia_phage	98.9	1.3e-48
VED45333.1|2138189_2138978_+	Uncharacterised protein	NA	A0A1B0V830	Salmonella_phage	96.9	1.3e-117
VED45335.1|2139017_2139440_+	putative periplasmic function protein	NA	A0A1B0VCB0	Salmonella_phage	99.3	6.1e-58
VED45337.1|2139617_2140010_+	Uncharacterised protein	NA	A0A077SLJ1	Escherichia_phage	99.2	2.0e-71
VED45339.1|2140327_2141188_+	putative RepFIB replication protein A	NA	Q71TL8	Escherichia_phage	100.0	4.7e-158
VED45341.1|2141587_2142793_+	putative partitioning protein A	NA	Q1MVJ3	Enterobacteria_phage	100.0	2.0e-226
VED45343.1|2142789_2143755_+	partitioning protein ParB	NA	Q1MVJ4	Enterobacteria_phage	100.0	3.3e-168
VED45345.1|2144019_2145726_+|capsid	major capsid protein	capsid	Q1MVJ5	Enterobacteria_phage	99.8	0.0e+00
VED45347.1|2145786_2147376_+|tail	tail sheath protein	tail	A0A077SLN8	Escherichia_phage	99.2	2.4e-304
VED45349.1|2147385_2147724_+|tail	tail tube protein	tail	A0A1B0V835	Salmonella_phage	96.5	3.9e-39
VED45351.1|2147658_2148036_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45353.1|2148080_2148356_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45354.1|2149005_2150622_-	PPE-repeat protein	NA	Q71TP5	Escherichia_phage	94.1	5.7e-96
VED45356.1|2150669_2151230_-	DNA invertase from prophage CP-933H	NA	Q71TD8	Escherichia_phage	99.5	6.1e-98
VED45358.1|2151357_2151639_+|holin	putative holin	holin	Q71TD9	Escherichia_phage	90.3	2.2e-40
VED45360.1|2151706_2152036_+|holin	putative holin	holin	Q37876	Escherichia_phage	100.0	1.3e-52
VED45362.1|2152032_2152476_+|lysis	lysis determining protein	lysis	A0A077SK09	Escherichia_phage	100.0	1.3e-82
VED45364.1|2152462_2153065_+	Uncharacterised protein	NA	Q1MVM6	Enterobacteria_phage	99.5	1.6e-99
VED45366.1|2153066_2154098_+|head	internal head protein	head	Q1MVM7	Enterobacteria_phage	94.7	1.6e-173
VED45368.1|2154094_2155483_+	defense against restriction protein	NA	A0A1B0VFY4	Salmonella_phage	99.1	1.6e-243
VED45370.1|2155516_2155957_+	Uncharacterised protein	NA	A0A077SLF0	Escherichia_phage	100.0	1.7e-79
VED45372.1|2155953_2156202_+	regulatory protein	NA	Q71TG0	Escherichia_phage	100.0	1.8e-41
VED45374.1|2156284_2157295_+	Protein of uncharacterised function (DUF2971)	NA	NA	NA	NA	NA
VED45376.1|2157837_2158566_-|transposase	IS5 transposase and trans-activator	transposase	Q38213	Escherichia_phage	100.0	6.7e-137
VED45378.1|2158667_2159909_+	putative pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.2	4.7e-106
VED45379.1|2160115_2160391_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45381.1|2160435_2160813_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45383.1|2160917_2161142_+	component of RNA polymerase	NA	A0A248SJA5	Salicola_phage	61.1	5.2e-08
VED45385.1|2161193_2162000_-	Linocin-M18	NA	NA	NA	NA	NA
VED45387.1|2162001_2162445_-	putative peroxidase	NA	NA	NA	NA	NA
VED45389.1|2162416_2163058_-	putative peroxidase	NA	NA	NA	NA	NA
VED45391.1|2163151_2163928_-	D-3-phosphoglycerate dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	29.3	2.0e-14
VED45393.1|2164067_2164343_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45395.1|2164387_2164765_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45397.1|2164882_2165530_+	HDOD domain	NA	NA	NA	NA	NA
VED45399.1|2165808_2166648_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45401.1|2166676_2166844_+|transposase	putative transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	100.0	8.9e-13
VED45402.1|2166874_2167258_+|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
VED45404.1|2167254_2167602_+	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
VED45406.1|2167651_2169187_+|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	88.1	4.8e-262
VED45408.1|2169522_2169870_+	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	99.1	1.3e-61
VED45410.1|2169918_2171457_+|transposase	putative transposase ORF 1, IS66 family	transposase	A0A0P0ZEB3	Stx2-converting_phage	94.3	5.1e-280
VED45412.1|2171679_2171862_+	methyl-accepting chemotaxis protein II	NA	NA	NA	NA	NA
VED45414.1|2171864_2174042_-	Colicin V secretion/processing ATP-binding protein CvaB	NA	W8CYL7	Bacillus_phage	25.3	1.6e-24
VED45416.1|2174041_2175295_-	microcin H47 secretion protein	NA	NA	NA	NA	NA
VED45418.1|2175297_2175948_-	microcin M activity protein McmM	NA	NA	NA	NA	NA
VED45420.1|2176180_2176543_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45422.1|2176671_2177331_-	resolvase domain-containing protein	NA	NA	NA	NA	NA
VED45424.1|2177498_2180486_+|transposase	transposase	transposase	A0A1B0V7H9	Salmonella_phage	53.9	2.0e-296
VED45426.1|2181044_2181179_+|transposase	IS5 transposase and trans-activator	transposase	Q38213	Escherichia_phage	100.0	8.1e-17
VED45428.1|2181272_2181947_+|transposase	IS5 transposase and trans-activator	transposase	Q38213	Escherichia_phage	99.1	3.3e-122
VED45430.1|2181974_2182841_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VED45432.1|2182837_2183137_-|transposase	transposase	transposase	NA	NA	NA	NA
VED45434.1|2183592_2183922_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45436.1|2184014_2184230_-	YajA protein	NA	NA	NA	NA	NA
VED45438.1|2184219_2184465_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45440.1|2184509_2184833_-	Uncharacterised protein	NA	A0A0K1LL53	Rhodobacter_phage	45.1	2.7e-13
VED45442.1|2184978_2185260_-	toxin of the RelE-RelB toxin-antitoxin system	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	62.4	3.8e-24
VED45444.1|2185249_2185501_-	putative antitoxin of toxin-antitoxin system	NA	NA	NA	NA	NA
VED45446.1|2186650_2187487_+	PI protein (Replication initiation protein)	NA	NA	NA	NA	NA
VED45448.1|2187526_2187973_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45450.1|2188109_2188448_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45452.1|2188556_2189537_-|transposase	IS5 transposase and trans-activator	transposase	Q38213	Escherichia_phage	99.7	3.6e-186
VED45454.1|2189946_2190324_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45456.1|2190395_2190611_+	Insertion element protein	NA	NA	NA	NA	NA
VED45458.1|2190672_2190987_-	protein	NA	NA	NA	NA	NA
VED45460.1|2191356_2192307_+	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
VED45462.1|2192460_2192736_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45464.1|2192780_2193158_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED45466.1|2193168_2193333_-|transposase	putative transposase B, IS5	transposase	A0A077SK28	Escherichia_phage	98.1	1.2e-22
VED45468.1|2193472_2194249_-	beta-lactamase fold protein	NA	NA	NA	NA	NA
VED45470.1|2194319_2195273_-	putative transcriptional regulator	NA	NA	NA	NA	NA
VED45472.1|2195292_2195691_-	Predicted ester cyclase	NA	NA	NA	NA	NA
VED45474.1|2195925_2196630_+|transposase	transposase, IS26	transposase	A0A077SL39	Escherichia_phage	99.1	9.9e-138
VED45476.1|2196669_2199030_+|transposase	transposase	transposase	Q1MVP5	Enterobacteria_phage	65.9	2.1e-296
VED45478.1|2199084_2199528_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45480.1|2199739_2200051_-	putative lysogeny establishment protein	NA	Q71TG4	Escherichia_phage	95.1	4.3e-45
VED45482.1|2200101_2201133_-	cyclization recombinase	NA	Q71TG5	Escherichia_phage	99.7	1.3e-194
VED45484.1|2201140_2201362_-	putative cre associated regulatory protein	NA	A0A077SLI9	Escherichia_phage	98.6	1.3e-35
VED45486.1|2201966_2202176_+	C1 inactivator protein	NA	Q5XLQ8	Enterobacteria_phage	100.0	4.8e-32
VED45488.1|2202286_2202697_+	primary repressor of lytic functions	NA	Q71T60	Escherichia_phage	98.4	2.9e-65
VED45490.1|2202723_2203308_+	primary repressor of lytic functions	NA	A0A077SLM8	Escherichia_phage	98.5	1.8e-71
VED45492.1|2203168_2204281_-	putative antirepression	NA	A0A077SLR9	Escherichia_phage	86.0	4.2e-175
VED45494.1|2204277_2204499_-	putative transcriptional regulator	NA	Q38557	Escherichia_phage	81.2	6.0e-25
VED45496.1|2204857_2206342_-	DNA packaging protein	NA	Q5QBP2	Enterobacteria_phage	99.6	1.6e-291
VED45498.1|2206341_2207535_-	DNA packaging protein	NA	Q5QBP3	Enterobacteria_phage	93.7	3.3e-194
VED45500.1|2207620_2208073_-	late promoter activating protein	NA	Q71T63	Escherichia_phage	99.3	2.0e-78
VED45502.1|2208161_2209205_-	putative prophage protein	NA	A0A077SLM1	Escherichia_phage	99.1	2.5e-206
VED45504.1|2209232_2209412_-	Uncharacterised protein	NA	Q71TH5	Escherichia_phage	98.3	1.2e-23
VED45506.1|2209416_2209797_-	toxin of P1 addiction system	NA	A0A077SK56	Escherichia_phage	100.0	1.1e-63
VED45508.1|2209796_2210018_-	antitoxin of P1 addiction system	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
VED45510.1|2210200_2211757_+	type I restriction-modification system, M subunit	NA	A0A2H4PQP4	Staphylococcus_phage	42.9	8.4e-105
VED45512.1|2211753_2212968_+	type I restriction-modification enzyme S subunit	NA	NA	NA	NA	NA
VED45514.1|2213089_2215483_+	type I restriction-modification enzyme R subunit	NA	NA	NA	NA	NA
VED45516.1|2215616_2216264_+|integrase	integrase	integrase	K7PGY1	Enterobacteria_phage	99.5	2.5e-111
VED45518.1|2216224_2216809_+|integrase	integrase	integrase	K7PGY1	Enterobacteria_phage	100.0	7.0e-113
VED45519.1|2217044_2217287_-	Uncharacterised protein	NA	M9P0E0	Enterobacteria_phage	100.0	4.0e-38
VED45521.1|2217392_2218079_-	exonuclease	NA	M9NZE1	Enterobacteria_phage	94.8	2.7e-119
VED45523.1|2218071_2218692_-	Uncharacterised protein	NA	A0A076GAP8	Staphylococcus_phage	41.1	5.5e-23
VED45525.1|2218688_2219606_-	RecT protein	NA	M9NZA6	Enterobacteria_phage	90.5	1.7e-158
VED45527.1|2219615_2219897_-	Uncharacterised protein	NA	M9NZI3	Enterobacteria_phage	94.6	4.6e-46
VED45529.1|2219904_2220981_-	phage-like protein	NA	A0A077KCC0	Edwardsiella_phage	70.2	5.8e-36
VED45531.1|2221051_2221261_-	FtsZ inhibitor protein	NA	M9NZE2	Enterobacteria_phage	95.7	2.0e-33
VED45533.1|2221257_2221416_-	Uncharacterised protein	NA	M9NZI5	Enterobacteria_phage	100.0	6.9e-23
VED45535.1|2221412_2221793_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45537.1|2221954_2222623_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45539.1|2222680_2222893_-	Uncharacterised protein	NA	K7P7B4	Enterobacteria_phage	100.0	5.4e-31
VED45541.1|2223354_2224107_-	Repressor protein CII	NA	A0A286S2B2	Klebsiella_phage	64.4	5.4e-73
VED45543.1|2224148_2224382_+	antirepressor protein Cro	NA	A0A0P0ZDD7	Stx2-converting_phage	62.3	2.6e-18
VED45545.1|2224399_2224942_+	bacteriophage regulatory protein CII	NA	M9NZI6	Enterobacteria_phage	78.3	6.0e-74
VED45547.1|2225031_2225178_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45549.1|2225170_2225491_+	replication protein O	NA	Q37929	Escherichia_phage	66.7	9.7e-32
VED45551.1|2225487_2226069_+	replication protein O	NA	F1C5C3	Cronobacter_phage	42.0	6.3e-37
VED45553.1|2226058_2227492_+	P protein; replicative DNA helicase	NA	Q716D2	Shigella_phage	86.9	2.3e-229
VED45555.1|2227491_2227836_+	Ren protein from phage origin	NA	G8C7U7	Escherichia_phage	94.7	2.5e-54
VED45557.1|2228025_2228415_+	Uncharacterised protein	NA	K7P6V8	Enterobacteria_phage	97.6	6.7e-35
VED45559.1|2228407_2228608_+	Uncharacterised protein	NA	K7P6F8	Enterobacteria_phage	100.0	5.6e-30
VED45561.1|2228607_2229318_+	Eaa protein	NA	M9NZE4	Enterobacteria_phage	86.4	3.8e-113
VED45563.1|2229430_2229931_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45565.1|2230119_2230575_+	DLP12 prophage; DNA base-flipping protein	NA	K7P7B8	Enterobacteria_phage	100.0	5.7e-86
VED45567.1|2230574_2230745_+	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	100.0	1.1e-23
VED45569.1|2230741_2231410_+	serine/threonine-protein phosphatase	NA	K7P6H8	Enterobacteria_phage	100.0	2.0e-132
VED45571.1|2231402_2231687_+	prophage protein	NA	G8C7V5	Escherichia_phage	95.7	9.4e-47
VED45573.1|2231683_2232043_+	Holliday junction resolvase	NA	G8C7V6	Escherichia_phage	61.3	2.0e-41
VED45575.1|2232152_2232842_+	Putative antiterminator Q	NA	I6PDF8	Cronobacter_phage	51.1	1.1e-56
VED45577.1|2233039_2233315_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED45579.1|2234165_2234444_+	Uncharacterised protein	NA	K7PGZ9	Enterobacteria_phage	100.0	6.0e-46
VED45581.1|2234415_2234961_+	membrane-associated lysozyme; Qin prophage	NA	K7PM52	Enterobacteria_phage	98.9	4.0e-102
VED45583.1|2235005_2235422_+|lysis	Rz lysis protein	lysis	M9NYX9	Enterobacteria_phage	59.9	7.1e-35
VED45585.1|2235454_2235859_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45587.1|2235935_2236577_+	Uncharacterised protein	NA	A0A1B0Z000	Pseudomonas_phage	32.1	8.2e-06
VED45589.1|2236816_2237386_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45591.1|2237327_2239451_+|terminase	Phage terminase large subunit (GpA)	terminase	A0A0C5ABH4	Bacteriophage	35.6	1.8e-97
VED45593.1|2239459_2239723_+	gpW	NA	NA	NA	NA	NA
VED45595.1|2239722_2241360_+|portal	lambda family phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	35.2	3.3e-91
VED45597.1|2241356_2242223_+	S49 family peptidase	NA	A0A2D1GN02	Marinobacter_phage	37.9	4.8e-49
VED45599.1|2242224_2242815_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45601.1|2242814_2243219_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45603.1|2243316_2244366_+|capsid	phage major capsid protein E	capsid	V5Q8G6	Xylella_phage	33.7	1.2e-51
VED45605.1|2244337_2244748_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45607.1|2244752_2245112_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45609.1|2245108_2245654_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45611.1|2245657_2245855_+	phage protein	NA	NA	NA	NA	NA
VED45613.1|2245851_2247354_+|tail	phage tail sheath protein	tail	B5TK67	Pseudomonas_phage	42.4	1.9e-101
VED45615.1|2247357_2247729_+	phage protein	NA	NA	NA	NA	NA
VED45617.1|2247730_2248009_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45619.1|2248150_2248735_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45621.1|2248688_2250080_+	putative lytic transglycosylase, catalytic	NA	T1SBJ1	Salmonella_phage	43.2	3.7e-19
VED45623.1|2250111_2250360_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45625.1|2250423_2251827_+	Tail/DNA circulation protein	NA	NA	NA	NA	NA
VED45627.1|2251823_2252909_+	bacteriophage Mu P protein	NA	M1PVV2	Vibrio_phage	31.2	1.3e-43
VED45629.1|2252947_2253490_+	bacteriophage Mu Gp45 protein	NA	A0A077KAY0	Edwardsiella_phage	30.8	5.9e-05
VED45631.1|2253486_2253768_+	phage protein GP46	NA	NA	NA	NA	NA
VED45633.1|2253926_2255069_+|plate	baseplate J protein	plate	A0A0A8WEY6	Clostridium_phage	34.8	6.2e-12
VED45635.1|2255065_2255659_+|tail	putative phage tail protein	tail	NA	NA	NA	NA
VED45637.1|2255710_2256373_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED45639.1|2256374_2256809_+	CPS-53 (KpLE1) prophage protein	NA	A0A0F7LDZ0	Escherichia_phage	53.8	5.0e-39
VED45641.1|2256780_2257206_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	37.7	5.3e-17
VED45643.1|2257616_2258165_+	site-specific DNA recombinase	NA	K7PJT4	Enterobacteria_phage	100.0	2.7e-98
VED45645.1|2258283_2258676_-	putative cytoplasmic protein YciI	NA	NA	NA	NA	NA
VED45647.1|2258788_2259523_+	transport protein TonB	NA	NA	NA	NA	NA
VED45649.1|2259562_2259961_-	putative acyl-coA thioester hydrolase	NA	NA	NA	NA	NA
VED45651.1|2260065_2260605_-	putative intracellular septation protein	NA	NA	NA	NA	NA
VED45653.1|2260634_2261378_-	membrane protein YciC	NA	NA	NA	NA	NA
VED45655.1|2261734_2262373_+	outer membrane protein W	NA	NA	NA	NA	NA
VED45657.1|2262432_2262939_-	protein YciE	NA	NA	NA	NA	NA
VED45659.1|2262984_2263485_-	YciF protein	NA	NA	NA	NA	NA
VED45661.1|2263570_2263750_-	protein	NA	NA	NA	NA	NA
VED45663.1|2264130_2264937_-	tryptophan synthase alpha chain	NA	NA	NA	NA	NA
VED45665.1|2264936_2266130_-	tryptophan synthase	NA	NA	NA	NA	NA
VED45667.1|2266141_2267500_-	tryptophan biosynthesis protein [includes: indole-3-glycero phosphate synthase; N-(5'-phospho ribosyl)anthranilate isomerase]	NA	A0A0P0IR83	Acinetobacter_phage	40.7	3.3e-36
VED45669.1|2267503_2269099_-	anthranilate synthase component II [includes: glutamine amidotransferase; anthranilate phosphoribosyltransferase]	NA	A0A0N7IRD9	Acinetobacter_phage	38.5	3.8e-52
VED45671.1|2269098_2270661_-	anthranilate synthase component I	NA	NA	NA	NA	NA
VED45673.1|2270934_2271816_+	putative phosphoesterase	NA	NA	NA	NA	NA
VED45675.1|2271812_2272433_+	putative RNA binding protein	NA	NA	NA	NA	NA
VED45677.1|2272460_2274356_+	putative inner membrane protein	NA	NA	NA	NA	NA
VED45679.1|2274566_2275442_+	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
VED45681.1|2275481_2275889_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
VED45683.1|2275875_2276073_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
VED45685.1|2276069_2276828_-	putative short chain dehydrogenase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.9	4.4e-06
VED45687.1|2277047_2278097_+|protease	protease	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
>prophage 9
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	2524583	2539147	4984892	transposase,integrase	Macacine_betaherpesvirus(25.0%)	19	2528343:2528359	2536426:2536442
VED46133.1|2524583_2524961_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED46135.1|2525061_2525343_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED46137.1|2525650_2525779_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED46139.1|2525794_2526583_-	resolvase	NA	I3WFA4	Macacine_betaherpesvirus	91.1	1.6e-51
VED46141.1|2526602_2527274_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED46143.1|2527338_2527635_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED46145.1|2528205_2528451_+	Uncharacterised protein	NA	NA	NA	NA	NA
2528343:2528359	attL	TTTCTGGCACAGGCTGG	NA	NA	NA	NA
VED46147.1|2528455_2529460_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED46149.1|2529544_2530075_-	N-acetyltransferase GCN5	NA	NA	NA	NA	NA
VED46151.1|2530078_2530348_-	toxin-antitoxin system protein	NA	NA	NA	NA	NA
VED46153.1|2530562_2530976_-|integrase	integrase catalytic subunit	integrase	U5P429	Shigella_phage	58.3	9.3e-35
VED46155.1|2531140_2532664_-	reverse transcriptase-like protein from prophage or plasmid	NA	A0A0U4J920	Pseudomonas_phage	31.3	4.0e-43
VED46157.1|2533255_2533675_-|transposase	transposase	transposase	NA	NA	NA	NA
VED46159.1|2533722_2534007_-|transposase	transposase IS3/IS911 family protein	transposase	NA	NA	NA	NA
VED46161.1|2535071_2535995_-|transposase	transposase, IS903.B	transposase	Q1MVF0	Enterobacteria_phage	96.4	6.9e-171
VED46163.1|2536285_2536549_+	Uncharacterised protein	NA	NA	NA	NA	NA
2536426:2536442	attR	TTTCTGGCACAGGCTGG	NA	NA	NA	NA
VED46165.1|2536545_2537550_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED46167.1|2537868_2538636_+	conjugal transfer pilus acetylation protein TraX	NA	NA	NA	NA	NA
VED46169.1|2538769_2539147_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 10
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	2559206	2619023	4984892	tail,transposase,head,terminase,lysis	Enterobacteria_phage(27.27%)	61	NA	NA
VED46223.1|2559206_2560604_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VED46225.1|2560866_2561673_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED46227.1|2561930_2563253_-	protein hipA	NA	NA	NA	NA	NA
VED46229.1|2563252_2563519_-	DNA-binding transcriptional regulator HipB	NA	NA	NA	NA	NA
VED46231.1|2563741_2569162_-	lipoprotein/autotransporter domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	38.0	6.1e-142
VED46233.1|2569692_2571285_-	putative carbohydrate kinase	NA	NA	NA	NA	NA
VED46235.1|2571363_2572317_-	putative sugar-binding regulatory protein	NA	NA	NA	NA	NA
VED46237.1|2572565_2574101_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.4	4.4e-21
VED46239.1|2574094_2575123_+	ABC transporter permease	NA	NA	NA	NA	NA
VED46241.1|2575122_2575698_+	ABC transporter permease	NA	NA	NA	NA	NA
VED46243.1|2575769_2576114_+	autoinducer-2 ABC transporter permease LsrD, truncation	NA	NA	NA	NA	NA
VED46245.1|2576125_2576845_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VED46247.1|2576874_2577147_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VED46249.1|2577173_2578049_+	putative aldolase	NA	NA	NA	NA	NA
VED46251.1|2578072_2578363_+	autoinducer-2 (AI-2) modifying protein LsrG	NA	NA	NA	NA	NA
VED46253.1|2578419_2579178_+	trans-aconitate methyltransferase	NA	NA	NA	NA	NA
VED46255.1|2579181_2580096_-	inner membrane protein	NA	NA	NA	NA	NA
VED46257.1|2580302_2581754_-	altronate oxidoreductase	NA	NA	NA	NA	NA
VED46259.1|2581980_2582928_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	29.6	7.3e-19
VED46261.1|2583039_2583399_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VED46263.1|2583398_2584325_-	glutaminase 2	NA	NA	NA	NA	NA
VED46265.1|2584388_2585777_-	succinate semialdehyde dehydrogenase	NA	NA	NA	NA	NA
VED46267.1|2585877_2586759_+	transcriptional regulator YneJ	NA	NA	NA	NA	NA
VED46269.1|2586836_2587952_+	protein	NA	NA	NA	NA	NA
VED46271.1|2588101_2589292_+	sugar efflux transporter	NA	NA	NA	NA	NA
VED46273.1|2589316_2589982_-	multiple antibiotic resistance protein	NA	NA	NA	NA	NA
VED46275.1|2590193_2590628_+	multiple antibiotic resistance regulatory protein	NA	NA	NA	NA	NA
VED46277.1|2590647_2591031_+	DNA-binding transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	32.3	4.7e-09
VED46279.1|2591062_2591281_+	multiple antibiotic resistance protein	NA	NA	NA	NA	NA
VED46281.1|2591311_2592211_-	amino acid metabolite efflux	NA	NA	NA	NA	NA
VED46283.1|2592405_2593593_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
VED46285.1|2594033_2594924_-	putative signal transduction protein	NA	A0A127AWB9	Bacillus_phage	37.7	8.2e-20
VED46287.1|2595178_2595571_-	stress response protein	NA	NA	NA	NA	NA
VED46289.1|2595846_2596365_+	competence damage-inducible protein A	NA	NA	NA	NA	NA
VED46291.1|2596408_2598454_-	dipeptidyl carboxypeptidase II	NA	NA	NA	NA	NA
VED46293.1|2598590_2599337_+	NADP-dependent L-serine/L-allo-threonine dehydrogenase	NA	NA	NA	NA	NA
VED46295.1|2599425_2600112_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VED46297.1|2600288_2600492_+	selenium carrying protein	NA	J9Q802	Salmonella_phage	55.2	1.6e-11
VED46299.1|2600526_2601987_-	putative sugar dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	1.5e-42
VED46301.1|2602075_2603359_-	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
VED46304.1|2604144_2604378_+	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
VED46306.1|2604694_2605285_+	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	39.3	1.5e-25
VED46308.1|2605957_2606236_-|tail	Prophage tail fiber domain protein	tail	NA	NA	NA	NA
VED46310.1|2606232_2608353_-|tail	tail component of prophage	tail	K7PKJ2	Enterobacteria_phage	99.6	3.0e-294
VED46312.1|2608349_2608556_-|head,tail	head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	98.5	2.2e-29
VED46314.1|2608552_2608975_-|terminase	phage terminase large subunit	terminase	A0A2I6TC92	Escherichia_phage	97.1	7.4e-72
VED46316.1|2609076_2609616_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED46318.1|2610196_2610607_+	Qin prophage	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
VED46319.1|2610758_2610932_-	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
VED46321.1|2612180_2612678_-	Qin prophage protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
VED46323.1|2612674_2613208_-	prophage lysozyme (endolysin)	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
VED46325.1|2613204_2613516_-	Qin prophage protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
VED46327.1|2613520_2613727_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.1	4.5e-30
VED46329.1|2613768_2613888_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED46331.1|2615005_2615218_+	cold shock-like protein CspF	NA	NA	NA	NA	NA
VED46333.1|2615639_2616392_-	lambdoid prophage Qin antitermination protein Q-like protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
VED46335.1|2616405_2617455_-	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
VED46337.1|2617801_2618053_-	putative prophage protein	NA	NA	NA	NA	NA
VED46339.1|2618269_2618425_-	putative host cell-killing modulation protein	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
VED46341.1|2618496_2618784_-	toxin of the RelE-RelB toxin-antitoxin system	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
VED46343.1|2618783_2619023_-	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
>prophage 11
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	2623304	2635307	4984892	integrase	Salmonella_phage(25.0%)	12	2619924:2619937	2633393:2633406
2619924:2619937	attL	TTCGCCATCAGCCT	NA	NA	NA	NA
VED46352.1|2623304_2623661_-	putative methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
VED46354.1|2623913_2625881_+	putative exonuclease from phage origin	NA	A0A192Y6E0	Salmonella_phage	56.7	6.8e-59
VED46356.1|2625968_2626205_+	putative excisionase	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
VED46358.1|2626239_2627520_+|integrase	defective integrase; Qin prophage	integrase	B6DZ48	Enterobacteria_phage	62.1	3.3e-155
VED46360.1|2627707_2628727_-	dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
VED46362.1|2628738_2629953_-	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
VED46364.1|2630158_2630485_-	inner membrane protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
VED46366.1|2630619_2630961_+	protein	NA	NA	NA	NA	NA
VED46368.1|2630995_2631556_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VED46370.1|2631558_2632305_-	lipoprotein	NA	NA	NA	NA	NA
VED46372.1|2632376_2632682_+	protein	NA	NA	NA	NA	NA
VED46374.1|2632880_2635307_+	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	49.2	7.7e-214
2633393:2633406	attR	TTCGCCATCAGCCT	NA	NA	NA	NA
>prophage 12
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	2925602	2986818	4984892	transposase,tRNA	Tupanvirus(16.67%)	53	NA	NA
VED46947.1|2925602_2927375_-|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VED46949.1|2927684_2928251_+	putative isochorismatase	NA	NA	NA	NA	NA
VED46951.1|2928247_2929066_+	conserved protein, UPF0759 family	NA	Q859D1	Escherichia_coli_phage	99.2	6.5e-72
VED46953.1|2929118_2929514_+	inner membrane protein	NA	NA	NA	NA	NA
VED46955.1|2929554_2930298_+	protein YecO	NA	F5B419	Synechococcus_phage	30.0	3.5e-24
VED46957.1|2930294_2931266_+	putative methyltransferase	NA	NA	NA	NA	NA
VED46959.1|2931430_2933860_-	trimethylamine-N-oxide reductase 2	NA	NA	NA	NA	NA
VED46961.1|2933884_2934985_-	cytochrome C-type protein	NA	NA	NA	NA	NA
VED46963.1|2935372_2936119_-	copper homeostasis protein	NA	NA	NA	NA	NA
VED46965.1|2936132_2936699_-	Protein yecM	NA	NA	NA	NA	NA
VED46967.1|2936914_2938648_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2K9L6Z2	Tupanvirus	33.5	3.4e-86
VED46969.1|2938824_2939313_+	protein	NA	NA	NA	NA	NA
VED46970.1|2939432_2939825_-	flagellar protein FlhE	NA	NA	NA	NA	NA
VED46972.1|2939824_2941903_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA	NA
VED46974.1|2941895_2943044_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
VED46976.1|2943245_2943890_-	chemotaxis regulator CheZ	NA	NA	NA	NA	NA
VED46978.1|2943900_2944290_-	Chemotaxis protein cheY	NA	A0A2K9L4R0	Tupanvirus	32.0	1.3e-06
VED46980.1|2944304_2945354_-	Chemotaxis response regulator protein-glutamate methylesterase	NA	Q56AR1	Bacillus_thuringiensis_phage	32.8	7.9e-06
VED46982.1|2945356_2946217_-	chemotaxis protein methyltransferase	NA	NA	NA	NA	NA
VED46984.1|2946235_2947837_-	methyl-accepting chemotaxis protein IV	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.7	6.4e-15
VED46986.1|2947882_2949544_-	methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.3	1.7e-10
VED46988.1|2949688_2950192_-	chemotaxis protein	NA	NA	NA	NA	NA
VED46990.1|2950212_2952177_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
VED46992.1|2952181_2953108_-	chemotaxis protein MotB (motility protein B)	NA	NA	NA	NA	NA
VED46994.1|2953104_2953992_-	chemotaxis protein MotA (motility protein A)	NA	NA	NA	NA	NA
VED46996.1|2954118_2954697_-	flagellar transcriptional activator	NA	NA	NA	NA	NA
VED46998.1|2954699_2955050_-	transcriptional activator FlhD	NA	NA	NA	NA	NA
VED47000.1|2955829_2956258_+	universal stress protein UspC	NA	NA	NA	NA	NA
VED47002.1|2956264_2957689_-	trehalose-6-phosphate synthase	NA	NA	NA	NA	NA
VED47004.1|2957663_2958464_-	trehalose-6-phosphate phosphatase	NA	NA	NA	NA	NA
VED47006.1|2958630_2959617_-	L-arabinose ABC transporter, permease protein	NA	NA	NA	NA	NA
VED47008.1|2959631_2961146_-	L-arabinose transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.1	4.3e-13
VED47010.1|2961215_2962205_-	L-arabinose-binding periplasmic protein	NA	NA	NA	NA	NA
VED47012.1|2963001_2963505_+	ferritin-like protein 2	NA	NA	NA	NA	NA
VED47014.1|2963583_2963835_-	protein	NA	NA	NA	NA	NA
VED47016.1|2964298_2964622_+	protein	NA	NA	NA	NA	NA
VED47018.1|2964793_2965291_+	ferritin	NA	NA	NA	NA	NA
VED47020.1|2965328_2965568_-	protein	NA	NA	NA	NA	NA
VED47022.1|2965759_2966971_+	tyrosine-specific transport protein	NA	NA	NA	NA	NA
VED47024.1|2967032_2967698_-	metal-binding protein	NA	NA	NA	NA	NA
VED47026.1|2968420_2974156_-	putative UvrD/REP helicase-like protein	NA	NA	NA	NA	NA
VED47028.1|2974342_2976385_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VED47030.1|2976377_2977829_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VED47032.1|2977853_2978060_-|transposase	transposase (partial)	transposase	Q716C2	Shigella_phage	91.2	4.8e-32
VED47034.1|2978124_2978400_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED47036.1|2978486_2979242_-	putative hydrolase	NA	NA	NA	NA	NA
VED47038.1|2979238_2982523_-	putative type I restriction enzyme HsdR protein	NA	A0A220A398	Liberibacter_phage	27.0	2.0e-63
VED47040.1|2982857_2983133_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED47042.1|2983177_2983555_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED47044.1|2983489_2984878_-	putative carnitine operon oxidoreductase	NA	A0A2L1IV26	Escherichia_phage	100.0	2.8e-06
VED47046.1|2985291_2985552_+	DNA-binding transcriptional regulator prophage remnant	NA	NA	NA	NA	NA
VED47048.1|2985655_2986522_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VED47050.1|2986518_2986818_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 13
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	3006891	3084163	4984892	transposase	Stx2-converting_phage(20.0%)	81	NA	NA
VED47096.1|3006891_3007455_-|transposase	transposase	transposase	A0A1W6JP07	Morganella_phage	97.3	1.7e-100
VED47097.1|3007522_3007810_+|transposase	transposase, C-ter fragment, truncated protein	transposase	A0A1S5RHE3	Helicobacter_phage	66.7	4.0e-29
VED47099.1|3008907_3009705_-	DNA-binding transcriptional regulator; DLP12 prophage	NA	NA	NA	NA	NA
VED47101.1|3009714_3010266_-	kinase inhibitor	NA	NA	NA	NA	NA
VED47103.1|3010434_3010767_-	Multidrug transporter emrE	NA	NA	NA	NA	NA
VED47105.1|3011100_3011415_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
VED47107.1|3011629_3013288_+	flagellar M-ring protein	NA	NA	NA	NA	NA
VED47109.1|3013280_3014276_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
VED47111.1|3014268_3014955_+	flagellar assembly protein H	NA	NA	NA	NA	NA
VED47113.1|3014954_3016328_+	flagellum-specific ATP synthase	NA	NA	NA	NA	NA
VED47115.1|3016346_3016790_+	flagellar protein FliJ	NA	NA	NA	NA	NA
VED47117.1|3016786_3017914_+	flagellar hook-length control protein	NA	NA	NA	NA	NA
VED47119.1|3018018_3018483_+	flagellar protein FliL	NA	NA	NA	NA	NA
VED47121.1|3018487_3019492_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
VED47123.1|3019488_3019902_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
VED47125.1|3019904_3020270_+	flagellar biosynthesis protein FliO	NA	NA	NA	NA	NA
VED47127.1|3020269_3021007_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
VED47129.1|3021016_3021286_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
VED47131.1|3021293_3022079_+	flagellar biosynthesis protein FliR	NA	NA	NA	NA	NA
VED47133.1|3022368_3022992_+	colanic acid capsullar biosynthesis activation protein A	NA	NA	NA	NA	NA
VED47135.1|3023035_3023224_-	DsrB protein	NA	NA	NA	NA	NA
VED47137.1|3023386_3023614_+	Protein of uncharacterised function (DUF2525)	NA	NA	NA	NA	NA
VED47139.1|3023911_3024727_+	mannosyl-3-phosphoglycerate phosphatase	NA	NA	NA	NA	NA
VED47141.1|3024723_3025479_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	35.6	5.9e-19
VED47143.1|3025482_3026418_-	diguanylate cyclase	NA	NA	NA	NA	NA
VED47145.1|3026588_3026771_-	putative small protein	NA	NA	NA	NA	NA
VED47147.1|3026849_3027767_-	putative methyl-independent mismatch repair protein	NA	NA	NA	NA	NA
VED47149.1|3027939_3028860_+	putative DMT superfamily transporter inner membrane protein	NA	NA	NA	NA	NA
VED47151.1|3028848_3029319_-	patch repair protein	NA	E5E3X5	Burkholderia_phage	47.6	1.5e-33
VED47153.1|3029299_3030718_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	55.6	1.4e-101
VED47155.1|3030784_3031480_-	putative phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	26.9	3.6e-07
VED47157.1|3031519_3031822_-	inner membrane protein YedR	NA	NA	NA	NA	NA
VED47159.1|3032449_3033019_+	Outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	53.8	7.5e-51
VED47161.1|3033079_3033352_+|transposase	transposase IS3/IS911 family protein	transposase	U5P4I9	Shigella_phage	91.2	2.8e-32
VED47163.1|3033402_3033678_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED47165.1|3033722_3034100_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED47167.1|3034093_3035266_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.3	1.7e-41
VED47169.1|3035405_3036224_+|transposase	IS600 orfAB' transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.2	1.2e-65
VED47171.1|3036477_3037458_-|transposase	IS5 transposase and trans-activator	transposase	A0A077SK28	Escherichia_phage	99.4	1.0e-185
VED47173.1|3037935_3038787_+	chaperone protein	NA	NA	NA	NA	NA
VED47175.1|3038884_3040243_-	two-component sensor kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	20.5	2.3e-05
VED47177.1|3040242_3041025_-	transcriptional regulatory protein YedW	NA	W8CYM9	Bacillus_phage	35.2	4.8e-32
VED47179.1|3041046_3041460_+	transthyretin-like protein	NA	NA	NA	NA	NA
VED47181.1|3041568_3042573_+	putative oxidoreductase	NA	NA	NA	NA	NA
VED47183.1|3042573_3043209_+	sulfite oxidase subunit YedZ	NA	NA	NA	NA	NA
VED47185.1|3043465_3044116_+	metal ABC transporter substrate binding protein	NA	NA	NA	NA	NA
VED47187.1|3044227_3044932_+|transposase	transposase, IS26	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
VED47189.1|3045286_3045718_+	cytochrome	NA	A0A0U2QLA7	Escherichia_phage	100.0	1.4e-30
VED47191.1|3046568_3047366_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
VED47193.1|3047826_3048384_+	adhesin	NA	NA	NA	NA	NA
VED47195.1|3048380_3049220_+	adhesin	NA	NA	NA	NA	NA
VED47197.1|3049257_3050793_-|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	87.7	2.0e-260
VED47199.1|3050842_3051190_-	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
VED47201.1|3051186_3051570_-|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
VED47203.1|3051596_3051854_+	adhesin	NA	NA	NA	NA	NA
VED47205.1|3051861_3055362_+	putative invasin	NA	NA	NA	NA	NA
VED47207.1|3056619_3059610_+	adhesin	NA	NA	NA	NA	NA
VED47209.1|3060192_3061245_-	ADP-heptose--LPS heptosyltransferase-like protein	NA	NA	NA	NA	NA
VED47211.1|3061559_3062876_+	shikimate transporter	NA	NA	NA	NA	NA
VED47213.1|3062977_3064432_+	AMP nucleosidase	NA	NA	NA	NA	NA
VED47215.1|3064774_3065491_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VED47217.1|3066119_3067574_-	multidrug efflux system	NA	NA	NA	NA	NA
VED47219.1|3067880_3068831_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VED47221.1|3068932_3069850_-	Nitrogen assimilation regulatory protein nac	NA	NA	NA	NA	NA
VED47223.1|3070307_3071243_-	ErfK/YbiS/YcfS/YnhG family protein	NA	NA	NA	NA	NA
VED47225.1|3071304_3072384_-	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
VED47227.1|3072395_3073139_-	cobalamin synthase	NA	NA	NA	NA	NA
VED47229.1|3073135_3073678_-	bifunctional adenosylcobalamin biosynthesis protein [includes adenosylcobinamide kinase; adenosylcobinamide-phosphate guanylyltransferase]	NA	NA	NA	NA	NA
VED47231.1|3075352_3075745_+	CP4-44 prophage; predicted disrupted hemin or colicin receptor	NA	NA	NA	NA	NA
VED47233.1|3075669_3076575_-	IS2 element protein	NA	Q9ZXG3	Shigella_phage	99.7	3.3e-178
VED47235.1|3076532_3076898_-|transposase	transposase	transposase	Q76S41	Shigella_phage	100.0	9.6e-60
VED47237.1|3077665_3079201_-|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	87.7	1.2e-260
VED47239.1|3079250_3079598_-	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
VED47241.1|3079594_3079978_-|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
VED47243.1|3080817_3080934_+|transposase	putative transposase, ISEc23	transposase	A0A0P0ZBS5	Stx2-converting_phage	70.6	6.0e-08
VED47245.1|3081129_3081372_+	Putative carbohydrate kinase	NA	NA	NA	NA	NA
VED47247.1|3081396_3082344_+	carbohydrate kinase	NA	NA	NA	NA	NA
VED47249.1|3082357_3082810_+	cytoplasmic protein	NA	NA	NA	NA	NA
VED47251.1|3082766_3082973_+|transposase	transposase InsI	transposase	NA	NA	NA	NA
VED47253.1|3083000_3083300_+|transposase	transposase	transposase	NA	NA	NA	NA
VED47255.1|3083296_3084163_+|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
>prophage 14
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	3374141	3393638	4984892	transposase,integrase,lysis	Enterobacteria_phage(68.18%)	32	3364023:3364037	3402124:3402138
3364023:3364037	attL	CAGGCCATCTTCCAG	NA	NA	NA	NA
VED47767.1|3374141_3375740_-	Phage protein	NA	K7PHC9	Enterobacteria_phage	71.3	2.3e-41
VED47769.1|3375870_3376608_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47771.1|3377972_3378179_-	DLP12 prophage; predicted protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
VED47773.1|3378464_3378875_+	putative envelope protein	NA	C6ZCX4	Enterobacteria_phage	99.3	9.4e-72
VED47775.1|3379165_3379459_+	lambdoid prophage DLP12 Bor-like protein	NA	K7PL54	Enterobacteria_phage	100.0	4.0e-48
VED47777.1|3379490_3379952_-	Rz endopeptidase from lambdoid prophage DLP12	NA	A0A0K2FJD0	Enterobacteria_phage	98.7	4.6e-75
VED47779.1|3379948_3380446_-	phage lysozome	NA	M1FJA0	Enterobacteria_phage	97.6	1.9e-90
VED47781.1|3380445_3380661_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
VED47783.1|3381248_3382331_+	outer membrane porin protein NmpC	NA	Q1MVN1	Enterobacteria_phage	76.3	8.9e-154
VED47786.1|3382519_3382903_-	lambdoid prophage DLP12 antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
VED47788.1|3383125_3383488_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	96.5	7.3e-60
VED47789.1|3383484_3383775_-	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	93.8	4.3e-47
VED47791.1|3383767_3383938_-	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	69.8	2.4e-13
VED47793.1|3383937_3384393_-	DLP12 prophage; DNA base-flipping protein	NA	I6PD71	Cronobacter_phage	67.5	1.4e-60
VED47795.1|3384583_3385036_-	17 kDa surface antigen	NA	NA	NA	NA	NA
VED47797.1|3385032_3385593_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED47799.1|3385849_3386041_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47801.1|3386227_3386647_+	Bet protein	NA	A0A1I9LJN0	Stx_converting_phage	100.0	3.9e-73
VED47803.1|3386643_3387324_+	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	99.6	1.0e-131
VED47805.1|3387320_3387503_+	phage protein	NA	A0A1U8QQC1	Enterobacteria_phage	100.0	1.6e-28
VED47807.1|3387475_3387667_+	phage protein	NA	A0A0P0ZC67	Stx2-converting_phage	96.8	2.8e-26
VED47809.1|3387949_3388225_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED47811.1|3388269_3388647_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED47813.1|3388834_3389056_+	putative C4-type zinc finger protein	NA	A0A0N7C211	Escherichia_phage	98.6	6.4e-35
VED47815.1|3389052_3389304_+	putative bacteriophage protein	NA	A0A0K2FJF6	Enterobacteria_phage	92.3	1.3e-31
VED47817.1|3389602_3390217_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47819.1|3390510_3390630_+	phage protein	NA	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	79.5	8.0e-08
VED47821.1|3390877_3391306_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED47823.1|3391327_3391705_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED47825.1|3391776_3391992_+	Insertion element protein	NA	NA	NA	NA	NA
VED47827.1|3392164_3392332_+	Uncharacterised protein	NA	A0A0K2FJ46	Enterobacteria_phage	98.2	1.3e-27
VED47829.1|3392567_3393638_+|integrase	putative integrase	integrase	K7P6P6	Enterobacteria_phage	99.4	3.3e-201
3402124:3402138	attR	CAGGCCATCTTCCAG	NA	NA	NA	NA
>prophage 15
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	3589340	3638784	4984892	transposase,tRNA	Leptospira_phage(16.67%)	45	NA	NA
VED48188.1|3589340_3589481_-|transposase	transposase	transposase	NA	NA	NA	NA
VED48191.1|3589503_3590616_-|transposase	IS186, transposase	transposase	NA	NA	NA	NA
VED48193.1|3591297_3592416_+	carboxylate-amine ligase	NA	NA	NA	NA	NA
VED48195.1|3592481_3592730_+	membrane protein YbdJ	NA	NA	NA	NA	NA
VED48197.1|3592794_3593163_+	putative cytoplasmic protein YjbR	NA	NA	NA	NA	NA
VED48199.1|3593256_3593910_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
VED48201.1|3594017_3595265_+	putative mechanosensitive ion channel protein	NA	NA	NA	NA	NA
VED48203.1|3595345_3596722_-	phenylalanine transporter	NA	NA	NA	NA	NA
VED48205.1|3596823_3599967_-	cation efflux system protein	NA	S5VTK5	Leptospira_phage	22.1	9.8e-60
VED48207.1|3599978_3601202_-	cation efflux system protein	NA	NA	NA	NA	NA
VED48209.1|3601217_3601550_-	cation efflux system protein	NA	NA	NA	NA	NA
VED48211.1|3601576_3602956_-	copper/silver efflux system outer membrane protein CusC	NA	NA	NA	NA	NA
VED48213.1|3603112_3603796_+	two-component system response regulator	NA	W8CYM9	Bacillus_phage	35.1	1.0e-30
VED48215.1|3603785_3605228_+	sensor kinase CusS	NA	A0A1V0SGX0	Hokovirus	26.2	3.0e-11
VED48217.1|3605377_3607615_+	bacteriophage N4 adsorption protein B	NA	NA	NA	NA	NA
VED48219.1|3607601_3610574_+	bacteriophage N4 receptor, outer membrane subunit	NA	NA	NA	NA	NA
VED48221.1|3610574_3611465_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED48223.1|3611647_3612409_+	porin thermoregulatory protein	NA	NA	NA	NA	NA
VED48225.1|3612773_3613406_+	two component transcriptional regulator, LuxR family	NA	NA	NA	NA	NA
VED48227.1|3613408_3613924_-	fimbrial protein	NA	NA	NA	NA	NA
VED48229.1|3613934_3614942_-	fimbrial protein	NA	NA	NA	NA	NA
VED48231.1|3614954_3617120_-	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
VED48233.1|3617189_3617465_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED48235.1|3617509_3617887_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED48237.1|3618045_3619008_+	5,10-methylene-tetrahydrofolate dehydrogenase	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.9e-30
VED48239.1|3619009_3619222_+	putative RNA-binding protein	NA	NA	NA	NA	NA
VED48240.1|3619329_3619851_+	putative membrane-bound metal-dependent hydrolase	NA	NA	NA	NA	NA
VED48242.1|3619886_3621272_-|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
VED48244.1|3621445_3621940_+	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA	NA
VED48246.1|3621942_3622665_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
VED48248.1|3622782_3623292_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	NA	NA	NA	NA
VED48250.1|3623288_3624356_+	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
VED48252.1|3624550_3625444_-	carbamate kinase	NA	NA	NA	NA	NA
VED48254.1|3625440_3626256_-	putative carboxylase	NA	NA	NA	NA	NA
VED48256.1|3626266_3627526_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VED48258.1|3627535_3629203_-	FdrA protein	NA	NA	NA	NA	NA
VED48260.1|3629519_3630569_+	ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
VED48262.1|3630590_3631826_+	allantoate amidohydrolase	NA	NA	NA	NA	NA
VED48264.1|3631836_3632622_+	putative glyoxylate utilization	NA	NA	NA	NA	NA
VED48266.1|3632849_3633995_-	glycerate kinase II	NA	W6LM47	Streptococcus_phage	41.6	9.1e-48
VED48268.1|3634016_3635318_-	putative permease	NA	NA	NA	NA	NA
VED48270.1|3635374_3636736_-	allantoinase	NA	NA	NA	NA	NA
VED48272.1|3636795_3638022_-	putative allantoin permease	NA	NA	NA	NA	NA
VED48274.1|3638086_3638362_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED48276.1|3638406_3638784_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 16
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	3844567	3884499	4984892	holin,transposase,protease	Micromonas_sp._RCC1109_virus(15.38%)	37	NA	NA
VED49060.1|3844567_3846601_-|holin	high-affinity choline transport protein (BCCT-family transporter)	holin	A0A2I7QNT1	Vibrio_phage	27.4	3.4e-21
VED49062.1|3846729_3847317_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
VED49064.1|3847330_3848803_+	betaine aldehyde dehydrogenase	NA	NA	NA	NA	NA
VED49066.1|3848816_3850487_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	4.7e-61
VED49068.1|3850699_3851368_+	inner membrane protein	NA	NA	NA	NA	NA
VED49069.1|3851610_3852306_-	transporter	NA	NA	NA	NA	NA
VED49071.1|3852298_3853726_-	putative electron transport protein YkgF	NA	NA	NA	NA	NA
VED49073.1|3853736_3854456_-	hydroxyacid oxidoreductase (Fe-S centre)	NA	NA	NA	NA	NA
VED49075.1|3854982_3855837_-	transcriptional regulator YkgD	NA	NA	NA	NA	NA
VED49077.1|3856062_3857388_+	putative pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.6	2.5e-113
VED49079.1|3857744_3858338_+	inner membrane protein	NA	NA	NA	NA	NA
VED49081.1|3858927_3859779_+	Putatve transcriptional regulator ykgA	NA	NA	NA	NA	NA
VED49083.1|3859735_3859843_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49085.1|3859904_3860120_-	Insertion element protein	NA	NA	NA	NA	NA
VED49087.1|3860191_3860569_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED49089.1|3860570_3860933_+	ferric transporter subunit	NA	NA	NA	NA	NA
VED49091.1|3860944_3861991_+	Fe(3+) ions import ATP-binding protein fbpC	NA	G3M9Y6	Bacillus_virus	37.7	1.5e-33
VED49093.1|3862099_3863032_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
VED49095.1|3863018_3864446_-	amino acid permease	NA	NA	NA	NA	NA
VED49097.1|3864498_3864588_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49098.1|3864696_3865908_-	Putative transport protein	NA	NA	NA	NA	NA
VED49100.1|3865977_3866991_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	30.8	1.2e-43
VED49102.1|3866987_3867938_-	acetaldehyde dehydrogenase	NA	E5EQ71	Micromonas_sp._RCC1109_virus	36.3	1.1e-33
VED49104.1|3867934_3868651_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
VED49106.1|3868752_3869619_-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase	NA	NA	NA	NA	NA
VED49108.1|3869647_3870601_-	2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2- dioxygenase	NA	NA	NA	NA	NA
VED49110.1|3870602_3871964_-	2-polyprenyl-6-methoxyphenol hydroxylase-like FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
VED49112.1|3872049_3873201_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.6	2.6e-42
VED49114.1|3873462_3873702_+	IS911 orfA	NA	Q716C2	Shigella_phage	98.3	5.7e-29
VED49116.1|3874293_3875817_+	reverse transcriptase-like protein from prophage or plasmid	NA	A0A0U4J920	Pseudomonas_phage	31.6	1.4e-43
VED49118.1|3876283_3877582_-|transposase	transposase	transposase	A0A218MNI5	uncultured_virus	48.6	2.3e-47
VED49120.1|3877799_3878579_-	ISSfl3 OrfC	NA	A0A218MNE7	uncultured_virus	69.4	5.1e-10
VED49122.1|3878679_3878961_+	Putative excisionase	NA	NA	NA	NA	NA
VED49124.1|3878995_3879565_+	molecular chaperone	NA	NA	NA	NA	NA
VED49126.1|3879670_3882520_+	chaperone ATPase	NA	K4FB40	Cronobacter_phage	41.2	1.2e-128
VED49128.1|3882519_3882711_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49130.1|3882771_3884499_+|protease	ATP-dependent metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	37.4	3.7e-85
>prophage 17
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	3904409	3925603	4984892	integrase	Enterobacteria_phage(25.0%)	26	3914966:3914978	3923859:3923871
VED49187.1|3904409_3904865_+	prophage protein	NA	A0A1W6JPI4	Morganella_phage	67.2	2.2e-45
VED49188.1|3904944_3905166_+	prophage protein	NA	H6WRV2	Salmonella_phage	46.4	1.4e-05
VED49190.1|3905235_3905337_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49192.1|3905391_3905652_-	putative prophage protein	NA	NA	NA	NA	NA
VED49194.1|3905717_3906416_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49196.1|3906566_3909287_-	TPA: injection protein	NA	A5VW64	Enterobacteria_phage	60.0	5.7e-149
VED49198.1|3909283_3910603_-	putative prophage DNA transfer protein	NA	B6SCW4	Bacteriophage	43.2	1.2e-35
VED49200.1|3910602_3911280_-	putative prophage DNA transfer protein	NA	Q2A0B2	Sodalis_phage	71.6	7.0e-56
VED49202.1|3911273_3911735_-	putative prophage protein	NA	Q2A0B3	Sodalis_phage	72.2	2.9e-61
VED49204.1|3911751_3911913_-	putative prophage protein	NA	NA	NA	NA	NA
VED49206.1|3912497_3915254_-	putative prophage DNA primase	NA	A0A1W6JPG0	Morganella_phage	57.1	8.9e-299
3914966:3914978	attL	TCCGGTAATCAAT	NA	NA	NA	NA
VED49208.1|3915240_3915612_-	putative prophage protein	NA	NA	NA	NA	NA
VED49210.1|3915604_3915946_-	putative prophage protein	NA	A0A1B5FPL8	Escherichia_phage	63.3	3.8e-34
VED49212.1|3915956_3916559_-	putative prophage protein	NA	Q8W653	Enterobacteria_phage	33.2	5.3e-23
VED49214.1|3916551_3916773_-	putative prophage protein	NA	NA	NA	NA	NA
VED49216.1|3916769_3917033_-	putative prophage protein	NA	NA	NA	NA	NA
VED49218.1|3917029_3917224_-	putative prophage protein	NA	NA	NA	NA	NA
VED49220.1|3917216_3917435_-	putative prophage protein	NA	NA	NA	NA	NA
VED49222.1|3918237_3918420_-	putative prophage protein	NA	NA	NA	NA	NA
VED49225.1|3918412_3919246_-	putative prophage protein	NA	G9L6G1	Escherichia_phage	47.5	5.3e-21
VED49227.1|3919258_3919690_-	putative prophage protein	NA	A0A1W6JPH9	Morganella_phage	49.0	3.9e-28
VED49229.1|3919689_3919893_-	putative phage transcriptional AlpA-like regulator	NA	A0A1V0E8E5	Vibrio_phage	50.9	4.7e-08
VED49231.1|3920321_3921536_-|integrase	prophage CPS-53 integrase	integrase	Q7M297	Enterobacteria_phage	56.5	9.7e-133
VED49233.1|3921891_3923145_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
VED49235.1|3923156_3924260_-	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
3923859:3923871	attR	ATTGATTACCGGA	NA	NA	NA	NA
VED49237.1|3924547_3925603_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	61.1	9.1e-119
>prophage 18
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	4011656	4076189	4984892	protease,transposase,tRNA	Stx2-converting_phage(16.67%)	59	NA	NA
VED49421.1|4011656_4012955_-|tRNA	tRNA(Ile)-lysidine synthetase	tRNA	NA	NA	NA	NA
VED49423.1|4013019_4013409_-	glyoxylase I family protein	NA	NA	NA	NA	NA
VED49425.1|4013465_4015607_-	lysine decarboxylase, constitutive	NA	NA	NA	NA	NA
VED49427.1|4015705_4016665_-	acetyl-CoA carboxylase	NA	NA	NA	NA	NA
VED49429.1|4016677_4020160_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	2.2e-209
VED49431.1|4020196_4020793_-	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	40.0	2.3e-26
VED49433.1|4020789_4021938_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
VED49435.1|4021937_4022726_-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucos am ine O-acyltransferase	NA	NA	NA	NA	NA
VED49437.1|4022729_4023185_-	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA	NA
VED49439.1|4023289_4024315_-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA	NA
VED49441.1|4024318_4024804_-	chaperone protein	NA	NA	NA	NA	NA
VED49443.1|4024925_4026029_-	outer membrane protein assembly factor	NA	NA	NA	NA	NA
VED49445.1|4026103_4027357_-	outer membrane protein assembly factor	NA	NA	NA	NA	NA
VED49447.1|4027386_4028739_-	zinc metallopeptidase RseP	NA	NA	NA	NA	NA
VED49449.1|4028750_4029500_-	CDP-diglyceride synthase	NA	NA	NA	NA	NA
VED49451.1|4029468_4029621_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED49453.1|4029620_4030379_-	undecaprenyl pyrophosphate synthetase	NA	R9W0U9	Flavobacterium_phage	44.4	7.7e-27
VED49455.1|4030567_4031764_-	1-deoxy-D-xylulose 5-phosphate reductoisomerase	NA	NA	NA	NA	NA
VED49457.1|4031855_4032413_-	ribosome recycling factor	NA	NA	NA	NA	NA
VED49459.1|4032704_4033430_-	uridylate kinase	NA	NA	NA	NA	NA
VED49461.1|4033576_4034428_-	elongation factor Ts	NA	NA	NA	NA	NA
VED49463.1|4034685_4035411_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
VED49465.1|4035778_4036573_+	methionine aminopeptidase	NA	NA	NA	NA	NA
VED49467.1|4036634_4039307_+	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
VED49469.1|4039337_4040162_+	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase	NA	NA	NA	NA	NA
VED49471.1|4040216_4041029_+	phosphatase	NA	NA	NA	NA	NA
VED49473.1|4041190_4041577_+	putative structural protein	NA	NA	NA	NA	NA
VED49475.1|4041665_4042823_-	carbohydrate diacid regulator	NA	NA	NA	NA	NA
VED49477.1|4042977_4044402_-|protease	protease Do precursor	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.8	1.9e-26
VED49479.1|4044531_4046049_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA	NA
VED49481.1|4046132_4046831_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
VED49483.1|4046823_4047624_+	vitamin B12-binding protein	NA	NA	NA	NA	NA
VED49485.1|4047661_4048285_+	putative membrane protein YadS	NA	NA	NA	NA	NA
VED49487.1|4048331_4048676_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	51.4	4.5e-27
VED49489.1|4048757_4050179_-	H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
VED49491.1|4050403_4051684_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
VED49493.1|4051841_4053824_-	ferrichrome transport system permease	NA	NA	NA	NA	NA
VED49495.1|4053820_4054711_-	iron-hydroxamate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VED49497.1|4054710_4055508_-	ferrichrome transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.9	2.7e-14
VED49499.1|4055558_4057802_-	ferrichrome outer membrane transporter	NA	NA	NA	NA	NA
VED49501.1|4058021_4060556_-	penicillin-binding protein 1B [includes: penicillin-insensitive transglycosylase; penicillin sensitive transpeptidase]	NA	NA	NA	NA	NA
VED49503.1|4060751_4063181_-	ATP-dependent helicase HrpB	NA	A0A0G2Y9F4	Acanthamoeba_polyphaga_mimivirus	28.8	1.0e-40
VED49505.1|4063254_4063785_+	2'-5' RNA ligase	NA	NA	NA	NA	NA
VED49507.1|4063799_4064504_+	sugar fermentation stimulation protein	NA	NA	NA	NA	NA
VED49509.1|4064681_4065137_+	RNA polymerase-binding transcription factor	NA	NA	NA	NA	NA
VED49511.1|4065173_4066100_+|tRNA	glutamyl-Q tRNA(Asp) synthetase	tRNA	NA	NA	NA	NA
VED49513.1|4066192_4067557_+	poly(A) polymerase	NA	H7BUW3	unidentified_phage	37.9	3.1e-26
VED49515.1|4067553_4068033_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA	NA
VED49517.1|4068402_4068987_+	fimbrial-like adhesin protein	NA	NA	NA	NA	NA
VED49519.1|4069091_4069463_+	Chaperone protein ecpD precursor	NA	NA	NA	NA	NA
VED49521.1|4069476_4070343_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VED49523.1|4070339_4070678_-|transposase	transposase	transposase	NA	NA	NA	NA
VED49525.1|4070944_4071292_+	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
VED49527.1|4071341_4072877_+|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	87.7	2.0e-260
VED49529.1|4072883_4073084_-|transposase	transposase	transposase	NA	NA	NA	NA
VED49531.1|4073133_4073442_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA	NA
VED49533.1|4073555_4074350_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
VED49535.1|4074361_4075213_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
VED49537.1|4075286_4076189_-|transposase	transposase YhgA family protein	transposase	Q2A0A7	Sodalis_phage	49.2	7.4e-61
>prophage 19
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	4288013	4328190	4984892	transposase	Shigella_phage(40.0%)	47	NA	NA
VED49904.1|4288013_4288958_-|transposase	transposase	transposase	Q2A0A7	Sodalis_phage	51.7	5.9e-61
VED49906.1|4289424_4290657_+	multidrug resistance protein	NA	NA	NA	NA	NA
VED49908.1|4290697_4291978_+	inner membrane protein	NA	NA	NA	NA	NA
VED49910.1|4292093_4293245_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
VED49912.1|4293254_4294022_+	ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
VED49914.1|4294018_4294276_+	Protein of uncharacterised function (DUF3343)	NA	NA	NA	NA	NA
VED49916.1|4294229_4295201_+	SdiA-regulated domain protein	NA	NA	NA	NA	NA
VED49918.1|4295268_4296447_+	major facilitator superfamily protein	NA	NA	NA	NA	NA
VED49920.1|4296459_4297014_-	RNA 2'-phosphotransferase-like protein	NA	A0A2R2ZGT8	Clostridioides_phage	45.6	2.7e-37
VED49922.1|4297263_4297947_+	putative transporter	NA	NA	NA	NA	NA
VED49924.1|4297971_4298406_+	putative transporter	NA	NA	NA	NA	NA
VED49926.1|4298418_4299591_+	isoaspartyl dipeptidase	NA	NA	NA	NA	NA
VED49928.1|4299655_4300567_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VED49930.1|4300559_4300952_-	DNA replication/recombination/repair protein	NA	NA	NA	NA	NA
VED49932.1|4301624_4302455_+	Protein of uncharacterised function (DUF2686)	NA	NA	NA	NA	NA
VED49934.1|4302595_4303321_-	uxu operon transcriptional regulator	NA	NA	NA	NA	NA
VED49936.1|4303367_4303562_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49938.1|4303583_4305044_-	D-mannonate oxidoreductase, NAD-binding	NA	H8ZJP8	Ostreococcus_tauri_virus	32.2	9.5e-50
VED49940.1|4305124_4306309_-	mannonate dehydratase	NA	NA	NA	NA	NA
VED49942.1|4306648_4307992_+	high-affinity gluconate transporter	NA	NA	NA	NA	NA
VED49944.1|4308164_4308551_-	FimH protein	NA	NA	NA	NA	NA
VED49946.1|4308504_4309068_-	FimH protein	NA	NA	NA	NA	NA
VED49948.1|4309087_4309591_-	P pilus assembly protein, pilin FimA	NA	NA	NA	NA	NA
VED49950.1|4309603_4310134_-	FimF protein	NA	NA	NA	NA	NA
VED49952.1|4310143_4311004_-	outer membrane usher protein FimD, truncation	NA	NA	NA	NA	NA
VED49954.1|4311247_4311625_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	100.0	1.3e-67
VED49956.1|4311669_4311945_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED49958.1|4312085_4312343_-	Biofilm development protein YmgB/AriR	NA	NA	NA	NA	NA
VED49960.1|4312466_4312577_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED49962.1|4313104_4313314_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED49964.1|4313314_4313608_-	IS1 protein InsB	NA	U5P0U6	Shigella_phage	89.0	4.2e-42
VED49966.1|4314093_4314615_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
VED49968.1|4314611_4315565_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA	NA
VED49970.1|4315651_4317976_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VED49971.1|4318020_4318923_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VED49972.1|4318919_4319918_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VED49973.1|4319914_4320871_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	8.2e-18
VED49974.1|4320871_4321639_+	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VED49975.1|4322195_4322453_-	KpLE2 phage-like element	NA	NA	NA	NA	NA
VED49976.1|4323103_4324627_-	reverse transcriptase-like protein from prophage or plasmid	NA	A0A0U4J920	Pseudomonas_phage	31.6	1.4e-43
VED49977.1|4325218_4325458_-	IS911 orfA	NA	Q716C2	Shigella_phage	100.0	1.5e-29
VED49978.1|4325699_4325972_-	IS911 protein	NA	Q716C1	Shigella_phage	97.7	1.0e-37
VED49979.1|4326192_4326543_+	yjhD	NA	NA	NA	NA	NA
VED49980.1|4326595_4326721_-	small predicted membrane protein	NA	NA	NA	NA	NA
VED49981.1|4326763_4327396_-	KpLE2 phage-like element; predicted oxidoreductase	NA	NA	NA	NA	NA
VED49982.1|4327492_4327870_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED49983.1|4327914_4328190_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
>prophage 20
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	4717942	4767449	4984892	tail,capsid,terminase,protease,holin,lysis,integrase,plate	Escherichia_phage(55.81%)	63	4733840:4733886	4764661:4764707
VED50650.1|4717942_4718473_+|protease	ATP-dependent hslVU protease peptidase subunit HslV	protease	NA	NA	NA	NA
VED50652.1|4718482_4719814_+|protease	ATP-dependent hslVU protease ATP-binding subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.9	1.7e-45
VED50654.1|4719880_4720807_+	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA	NA
VED50656.1|4720899_4721385_+	ribonuclease activity regulator protein RraA	NA	NA	NA	NA	NA
VED50658.1|4721469_4721709_-	cell division factor ZapB	NA	NA	NA	NA	NA
VED50660.1|4722139_4722985_+	glycerol uptake facilitator protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	28.0	3.4e-15
VED50662.1|4723007_4724516_+	glycerol kinase	NA	NA	NA	NA	NA
VED50664.1|4724650_4725661_+	fructose 1,6-bisphosphatase II	NA	NA	NA	NA	NA
VED50666.1|4725757_4726504_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
VED50668.1|4726508_4726937_-	universal stress protein D	NA	NA	NA	NA	NA
VED50670.1|4726963_4727263_-	conserved protein, UPF0381 family	NA	NA	NA	NA	NA
VED50672.1|4727474_4727915_-	inner membrane protein	NA	NA	NA	NA	NA
VED50674.1|4728015_4728615_+	Protein of uncharacterised function (DUF1454)	NA	NA	NA	NA	NA
VED50676.1|4728722_4729490_+	triosephosphate isomerase	NA	NA	NA	NA	NA
VED50678.1|4729544_4730300_-	CDP-diacylglycerol pyrophosphatase	NA	NA	NA	NA	NA
VED50680.1|4730406_4731396_-	sulfate-binding protein (sulfate starvation-induced protein 2)	NA	NA	NA	NA	NA
VED50682.1|4731715_4732678_-	6-phosphofructokinase	NA	NA	NA	NA	NA
VED50684.1|4732858_4733761_-	ferrous-iron efflux pump	NA	NA	NA	NA	NA
4733840:4733886	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
VED50686.1|4733968_4734610_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED50688.1|4734750_4734969_-	transcriptional activator Ogr/delta	NA	A0A0F7LDQ9	Escherichia_phage	100.0	4.7e-38
VED50690.1|4735050_4736214_-	phage protein D	NA	U5N3V4	Enterobacteria_phage	98.7	1.3e-203
VED50692.1|4736213_4736693_-	gpU phage protein	NA	A0A0F7LDE8	Escherichia_phage	98.7	1.9e-84
VED50694.1|4736707_4739155_-|tail	phage related tail protein	tail	M1T2S3	Escherichia_phage	96.7	0.0e+00
VED50696.1|4739299_4739575_-|tail	tail protein E (GpE)	tail	A0A0F7LDQ8	Escherichia_phage	100.0	5.7e-41
VED50698.1|4739631_4740150_-|tail	phage major tail tube protein FII	tail	A0A0F7LDZ1	Escherichia_phage	100.0	1.4e-93
VED50700.1|4740162_4741353_-|tail	major tail sheath protein FI	tail	A0A0F7LBW9	Escherichia_phage	99.5	6.2e-225
VED50702.1|4741412_4742006_-	Resolvase domain-containing protein	NA	A0A0F7LA37	Escherichia_phage	96.4	1.8e-103
VED50704.1|4742036_4742573_+|tail	variable tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.4	5.6e-48
VED50707.1|4742573_4743176_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	85.9	3.4e-94
VED50709.1|4743147_4743591_-	CPS-53 (KpLE1) prophage protein	NA	A0A0F7LDZ0	Escherichia_phage	62.4	1.1e-46
VED50711.1|4743590_4744973_-|tail	phage tail collar protein	tail	M1TAS6	Escherichia_phage	90.4	1.7e-186
VED50712.1|4744969_4745581_-|tail	phage P2-related tail formation protein	tail	A0A0F7LA36	Escherichia_phage	99.0	1.1e-116
VED50714.1|4745573_4746482_-|plate	baseplate assembly protein	plate	A0A0F7LCQ9	Escherichia_phage	98.7	9.1e-160
VED50716.1|4746486_4746834_-|plate	phage baseplate protein	plate	A0A0F7LDQ1	Escherichia_phage	100.0	1.3e-58
VED50718.1|4746830_4747466_-|plate	Baseplate assembly protein V (GpV)	plate	A0A0F7LBP2	Escherichia_phage	94.3	1.1e-108
VED50720.1|4747549_4748293_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED50722.1|4748506_4748959_-|tail	tail protein	tail	A0A0F7LDR6	Escherichia_phage	100.0	8.2e-77
VED50724.1|4748951_4749419_-|tail	tail protein	tail	A0A0F7LA33	Escherichia_phage	98.1	2.5e-81
VED50727.1|4749381_4749540_-|lysis	phage lysis protein LysC	lysis	M1RZ27	Escherichia_phage	100.0	2.6e-22
VED50729.1|4749526_4749952_-	LysB protein	NA	Q858W0	Yersinia_virus	96.5	1.8e-65
VED50731.1|4749939_4750365_-	LysA protein	NA	U5N096	Enterobacteria_phage	95.7	6.1e-58
VED50733.1|4750379_4750877_-	phage lysin	NA	A0A0F7LBS0	Escherichia_phage	100.0	3.1e-93
VED50735.1|4750876_4751158_-|holin,lysis	phage lysis holin	holin,lysis	A0A0F7LA12	Escherichia_phage	100.0	1.3e-43
VED50737.1|4751161_4751365_-|tail	phage tail protein X	tail	U5N3E7	Enterobacteria_phage	100.0	4.0e-31
VED50739.1|4751364_4751874_-|capsid	capsid completion protein	capsid	U5N0S3	Enterobacteria_phage	99.4	3.3e-90
VED50741.1|4751973_4752717_-|terminase	small terminase subunit	terminase	Q94MJ2	Enterobacteria_phage	97.6	1.9e-126
VED50743.1|4752720_4753794_-|capsid	major capsid protein	capsid	Q94MK2	Enterobacteria_phage	99.7	7.4e-201
VED50745.1|4753852_4754707_-|capsid	phage capsid scaffolding protein	capsid	A0A0F7LA11	Escherichia_phage	100.0	1.7e-139
VED50747.1|4754880_4756653_+	Terminase, ATPase subunit (GpP)	NA	A0A0F7LCK3	Escherichia_phage	99.8	0.0e+00
VED50749.1|4756652_4757687_+|capsid	phage capsid protein	capsid	U5N087	Enterobacteria_phage	99.4	2.4e-201
VED50751.1|4758353_4758467_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED50753.1|4758769_4761046_-	Replication gene A protein (GpA)	NA	A0A0F7LBQ2	Escherichia_phage	97.5	0.0e+00
VED50755.1|4761035_4761311_-	relication initiation protein	NA	U5N3W1	Enterobacteria_phage	100.0	3.8e-45
VED50757.1|4761307_4761532_-	C4-type zinc finger protein, DksA/TraR family	NA	A0A0F7LDG9	Escherichia_phage	97.3	5.0e-35
VED50759.1|4761531_4761834_-	Uncharacterised protein	NA	A0A0F7LCL4	Escherichia_phage	97.0	2.5e-45
VED50761.1|4761833_4762058_-	Protein of uncharacterised function (DUF2732)	NA	S4TP68	Salmonella_phage	97.3	8.8e-32
VED50763.1|4762121_4762622_-	Phage protein B	NA	S4TTB7	Salmonella_phage	99.4	1.7e-91
VED50765.1|4762791_4763064_-	Regulatory phage protein cox	NA	Q1JS36	Enterobacteria_phage	100.0	1.4e-47
VED50767.1|4763200_4763494_+	Helix-turn-helix domain protein	NA	Q1JS37	Enterobacteria_phage	100.0	2.7e-49
VED50769.1|4763563_4764544_+|integrase	site-specific recombinase, phage integrase family protein	integrase	S4TP66	Salmonella_phage	99.7	1.8e-185
VED50771.1|4764730_4765231_-	repressor CpxP	NA	NA	NA	NA	NA
4764661:4764707	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
VED50773.1|4765380_4766079_+	transcriptional regulatory protein CpxR	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
VED50775.1|4766075_4767449_+	two-component sensor kinase	NA	W8CYF6	Bacillus_phage	25.9	3.8e-16
>prophage 21
LR134247	Escherichia coli strain NCTC9040 genome assembly, chromosome: 1	4984892	4960207	4978527	4984892	transposase	Moraxella_phage(100.0%)	21	NA	NA
VED51114.1|4960207_4960483_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED51116.1|4960527_4960905_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED51118.1|4961096_4961933_+	transcriptional antiterminator BglG	NA	NA	NA	NA	NA
VED51120.1|4962166_4962544_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED51122.1|4962588_4962864_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED51123.1|4962993_4964721_+	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA	NA
VED51125.1|4964739_4966152_+	glycoside hydrolase family protein	NA	NA	NA	NA	NA
VED51127.1|4966220_4967837_+	outer membrane protein YieC	NA	NA	NA	NA	NA
VED51129.1|4967863_4969033_+	xylanase	NA	NA	NA	NA	NA
VED51131.1|4969047_4969770_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
VED51133.1|4969831_4970419_-	colicin E2 tolerance protein	NA	NA	NA	NA	NA
VED51135.1|4970467_4970941_-	inner membrane protein	NA	NA	NA	NA	NA
VED51137.1|4971007_4971673_-	6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
VED51139.1|4971839_4973177_+	putative permease	NA	A0A0R6PHV4	Moraxella_phage	35.7	2.6e-62
VED51141.1|4973230_4973797_-	putative NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
VED51143.1|4973938_4974568_-	phosphopantetheinyl transferase	NA	NA	NA	NA	NA
VED51145.1|4974724_4975684_-	DNA-binding transcriptional regulator YidZ	NA	NA	NA	NA	NA
VED51147.1|4975658_4976834_-	multidrug resistance protein	NA	NA	NA	NA	NA
VED51149.1|4976966_4977794_-	low affinity tryptophan permease	NA	NA	NA	NA	NA
VED51151.1|4977829_4978207_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VED51153.1|4978251_4978527_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
