The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134264	Staphylococcus hyicus strain NCTC7944 genome assembly, chromosome: 1	2675237	561388	626800	2675237	protease,holin	Bacillus_phage(33.33%)	57	NA	NA
VED59408.1|561388_561775_+|holin	holin-like protein	holin	NA	NA	NA	NA
VED59409.1|561771_562458_+|holin	holin-like protein	holin	NA	NA	NA	NA
VED59410.1|562565_564308_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.6	3.5e-35
VED59411.1|564464_565025_+	acetyltransferase	NA	NA	NA	NA	NA
VED59412.1|565097_565496_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
VED59413.1|565567_566062_+	AzlC	NA	NA	NA	NA	NA
VED59414.1|566272_566599_+	putative branched-chain amino acid transport protein	NA	NA	NA	NA	NA
VED59415.1|566699_567716_-	putative nickel transport protein	NA	NA	NA	NA	NA
VED59416.1|567915_568683_+	putative lysophospholipase	NA	NA	NA	NA	NA
VED59417.1|568734_569769_+	putative catabolite control protein A	NA	NA	NA	NA	NA
VED59418.1|569875_570454_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED59419.1|571200_572244_+	transcriptional regulator pfoR	NA	NA	NA	NA	NA
VED59420.1|572287_572965_+	putative L-serine dehydratase beta chain	NA	NA	NA	NA	NA
VED59421.1|572978_573869_+	putative L-serine dehydratase	NA	NA	NA	NA	NA
VED59422.1|574045_574222_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED59423.1|574297_574831_+	putative NADPH oxidoreductase	NA	NA	NA	NA	NA
VED59424.1|574911_575583_+	putative NAD(P)H-flavin oxidoreductase	NA	NA	NA	NA	NA
VED59425.1|575732_576728_+	D-specific D-2-hydroxyacid dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	31.2	2.7e-40
VED59426.1|576775_578563_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	31.2	4.7e-51
VED59427.1|578555_580337_+	putative ABC transporter ATP-binding/permease	NA	W8CYL7	Bacillus_phage	28.9	1.6e-51
VED59428.1|580410_580692_-	acetyltransferase	NA	NA	NA	NA	NA
VED59429.1|581035_582103_+	zinc ABC transporter periplasmic-binding protein ZnuA	NA	NA	NA	NA	NA
VED59430.1|582260_583154_+	putative glyoxylase family protein	NA	NA	NA	NA	NA
VED59431.1|583432_584836_+	melibiose:sodium symporter	NA	NA	NA	NA	NA
VED59432.1|584929_585781_-	lactose operon transcription regulator	NA	NA	NA	NA	NA
VED59433.1|585877_588826_+	beta-D-galactosidase	NA	L0N6M2	Herpes_simplex_virus	30.9	3.5e-128
VED59434.1|588931_590884_-	putative fructose-bisphosphatase	NA	NA	NA	NA	NA
VED59435.1|591082_591940_+	putative ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	4.2e-13
VED59436.1|591936_592599_+	membrane protein	NA	NA	NA	NA	NA
VED59437.1|592673_593288_-	putative alkaline phosphatase	NA	NA	NA	NA	NA
VED59438.1|593638_594913_+	putative glucarate transporter	NA	NA	NA	NA	NA
VED59439.1|595074_595377_+	monooxygenase family protein	NA	NA	NA	NA	NA
VED59440.1|595480_596179_+	putative alpha-acetolactate decarboxylase	NA	NA	NA	NA	NA
VED59441.1|596310_598236_+	Integral membrane protein	NA	NA	NA	NA	NA
VED59442.1|598279_598684_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VED59443.1|598875_600075_-	putative GTPases (G3E family) protein	NA	NA	NA	NA	NA
VED59444.1|600336_601047_+	GTP-pyrophosphokinase	NA	NA	NA	NA	NA
VED59445.1|601647_603747_+	putative ATP-dependent Clp proteinase chain clpL	NA	H6X3M6	Enterobacteria_phage	37.2	1.0e-113
VED59446.1|603909_604596_+	putative gluconate operon transcriptional repressor	NA	NA	NA	NA	NA
VED59447.1|604608_606144_+	putative gluconokinase	NA	NA	NA	NA	NA
VED59448.1|606280_607642_+	putative gluconate permease	NA	NA	NA	NA	NA
VED59449.1|607712_608492_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED59450.1|608536_609790_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
VED59451.1|609886_612055_-	polyphosphate kinase	NA	NA	NA	NA	NA
VED59452.1|612261_613860_-	putative exopolyphosphatase	NA	NA	NA	NA	NA
VED59453.1|614136_614598_+	lipoprotein	NA	NA	NA	NA	NA
VED59454.1|614808_615417_+	membrane protein	NA	NA	NA	NA	NA
VED59455.1|615609_616398_+|protease	metal-dependent membrane protease	protease	NA	NA	NA	NA
VED59456.1|616585_617329_+|protease	metal-dependent membrane protease	protease	NA	NA	NA	NA
VED59457.1|617497_618166_+	putative ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	34.2	8.8e-19
VED59458.1|618162_618942_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VED59459.1|619113_620277_+	putative transport protein	NA	NA	NA	NA	NA
VED59460.1|620315_621698_-	putative para-nitrobenzyl esterase chain A	NA	NA	NA	NA	NA
VED59461.1|621777_623415_-	putative amino acid transporter	NA	NA	NA	NA	NA
VED59462.1|623892_624489_+	molecular chaperone GroEL	NA	NA	NA	NA	NA
VED59463.1|624956_626171_+|holin	putative glycine betaine/carnitine/choline ABC transporter (ATP-bindin) opuCA	holin	Q6GZ03	Mycoplasma_phage	50.5	3.8e-20
VED59464.1|626170_626800_+|holin	putative glycine betaine/carnitine/choline transport system permease	holin	NA	NA	NA	NA
>prophage 2
LR134264	Staphylococcus hyicus strain NCTC7944 genome assembly, chromosome: 1	2675237	1145170	1179539	2675237	tRNA	Staphylococcus_phage(92.59%)	35	NA	NA
VED59978.1|1145170_1147213_-	cation exporting ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	4.1e-67
VED59979.1|1147472_1147985_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED59980.1|1148164_1148857_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED59981.1|1148972_1150361_+	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	57.1	5.0e-157
VED59982.1|1150363_1151374_+	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	53.4	6.7e-95
VED59983.1|1151364_1151622_-	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	4.7e-29
VED59984.1|1151699_1152191_+	MutT/NUDIX hydrolase family protein	NA	A0A2H4PQM4	Staphylococcus_phage	50.3	1.0e-35
VED59985.1|1152156_1152930_+	peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	66.5	1.3e-93
VED59986.1|1152982_1154575_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	4.0e-259
VED59987.1|1154962_1156159_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	81.4	8.8e-187
VED59988.1|1156255_1157155_+	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.4	4.0e-99
VED59989.1|1157276_1158113_+	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	65.7	1.2e-102
VED59990.1|1158164_1158518_-	CrcB-like protein	NA	NA	NA	NA	NA
VED59991.1|1158510_1158882_-	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	64.5	3.6e-38
VED59992.1|1158942_1159251_-	membrane protein	NA	NA	NA	NA	NA
VED59993.1|1159438_1160155_+	putative translaldolase	NA	M1PR54	Cyanophage	35.0	3.8e-20
VED59994.1|1160296_1160758_+	putative staphylococcal protein	NA	A0A2H4PQT8	Staphylococcus_phage	41.6	1.8e-18
VED59995.1|1160732_1161173_-	comK family protein	NA	NA	NA	NA	NA
VED59996.1|1161172_1161670_-	RNA polymerase sigma factor sigS	NA	A0A2H4PQT5	Staphylococcus_phage	42.5	1.1e-21
VED59997.1|1161874_1162096_+	putative staphylococcal protein	NA	NA	NA	NA	NA
VED59998.1|1162497_1163343_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JNR1	Staphylococcus_phage	41.7	4.2e-42
VED59999.1|1163484_1164966_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	1.0e-14
VED60000.1|1165359_1166409_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	59.4	1.0e-117
VED60001.1|1166413_1167046_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	61.4	2.8e-67
VED60002.1|1167061_1168243_+	riboflavin biosynthesis protein	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	1.4e-168
VED60003.1|1168275_1168737_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.2	3.9e-58
VED60004.1|1168810_1169806_-	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	63.3	5.8e-115
VED60005.1|1170067_1170898_+	putative lysophospholipase	NA	NA	NA	NA	NA
VED60006.1|1171074_1172031_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
VED60007.1|1172096_1172654_-	putative rRNA methylase	NA	A0A2H4PQV0	Staphylococcus_phage	61.6	3.0e-60
VED60008.1|1172650_1173613_-	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	84.4	2.5e-67
VED60009.1|1173885_1175064_+	major facilitator superfamily permease	NA	A0A2H4PQR6	Staphylococcus_phage	73.2	3.0e-163
VED60010.1|1175443_1177858_+|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	84.9	0.0e+00
VED60011.1|1177878_1178196_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.7	1.5e-32
VED60012.1|1178282_1179539_-	flavoprotein	NA	A0A2H4PQX1	Staphylococcus_phage	75.0	2.6e-40
>prophage 3
LR134264	Staphylococcus hyicus strain NCTC7944 genome assembly, chromosome: 1	2675237	1307905	1318009	2675237	tRNA	Klosneuvirus(33.33%)	7	NA	NA
VED60126.1|1307905_1310209_+	putative single-strand DNA-specific exonuclease	NA	A7KV88	Bacillus_phage	30.9	2.7e-75
VED60127.1|1310227_1310746_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.4	6.2e-28
VED60128.1|1311097_1313287_+	GTP pyrophosphokinase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	9.0e-12
VED60129.1|1313302_1313755_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
VED60130.1|1313751_1314627_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.1	6.8e-11
VED60131.1|1314952_1316227_+|tRNA	histidyl-tRNA synthetase	tRNA	A0A2K9L6G5	Tupanvirus	23.8	3.9e-15
VED60132.1|1316242_1318009_+|tRNA	aspartyl-tRNA synthetase	tRNA	A0A1V0SIS0	Klosneuvirus	33.7	9.2e-07
>prophage 4
LR134264	Staphylococcus hyicus strain NCTC7944 genome assembly, chromosome: 1	2675237	1578033	1707957	2675237	holin,portal,integrase,tail,terminase,tRNA,capsid,protease,head	uncultured_Caudovirales_phage(31.82%)	181	1568573:1568592	1689297:1689316
1568573:1568592	attL	TGCTAATTCTTTAATATGGT	NA	NA	NA	NA
VED60383.1|1578033_1578432_-	phage protein	NA	M9QRV7	Staphylococcus_phage	65.9	7.0e-48
VED60384.1|1578421_1578949_-	phage protein	NA	M9QX37	Staphylococcus_phage	76.3	6.2e-76
VED60385.1|1579276_1580929_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4J5A3	uncultured_Caudovirales_phage	59.5	4.2e-203
VED60386.1|1580930_1581182_-	Uncharacterised protein	NA	A0A2H4JAG6	uncultured_Caudovirales_phage	62.7	1.8e-25
VED60387.1|1581168_1581609_-	Uncharacterised protein	NA	A0A2H4JAH6	uncultured_Caudovirales_phage	55.6	1.3e-34
VED60388.1|1581622_1581946_-	Uncharacterised protein	NA	A0A2H4J862	uncultured_Caudovirales_phage	38.3	2.3e-12
VED60389.1|1582010_1582334_-	phi PVL ORF 22-like protein	NA	NA	NA	NA	NA
VED60390.1|1582377_1582545_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60391.1|1582541_1582919_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60392.1|1582905_1587789_-	phage minor structural, N-terminal region domain protein	NA	A0A2H4J300	uncultured_Caudovirales_phage	43.7	0.0e+00
VED60393.1|1587804_1589283_-|tail	putative phage tail component	tail	A0A1J0MFV2	Staphylococcus_phage	57.7	5.7e-151
VED60394.1|1589282_1595192_-	peptidase M23	NA	A0A2H4JAS2	uncultured_Caudovirales_phage	61.5	1.2e-247
VED60395.1|1595231_1595558_-	Uncharacterised protein	NA	A0A2H4J2E1	uncultured_Caudovirales_phage	42.3	2.8e-10
VED60396.1|1595572_1596100_-	Uncharacterised protein	NA	A0A1U9WQR2	Geobacillus_phage	36.6	4.5e-10
VED60397.1|1596372_1597161_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60398.1|1597199_1597607_-|capsid	Minor capsid protein from bacteriophage	capsid	NA	NA	NA	NA
VED60399.1|1597606_1598095_-	Uncharacterised protein	NA	A0A2H4J401	uncultured_Caudovirales_phage	43.8	5.8e-20
VED60400.1|1598087_1598429_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60401.1|1598425_1598791_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60402.1|1598803_1599103_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60403.1|1599116_1600163_-	Uncharacterised protein	NA	A0A2H4J2G1	uncultured_Caudovirales_phage	36.0	6.4e-56
VED60404.1|1600196_1600562_-	Uncharacterised protein	NA	A0A2H4J5H4	uncultured_Caudovirales_phage	49.6	2.3e-21
VED60405.1|1600580_1601228_-	phage minor structural GP20	NA	X2CYF9	Lactobacillus_phage	31.0	4.1e-13
VED60406.1|1601602_1602664_-|head	phage head morphogenesis protein, SPP1 gp7 family	head	A0A2H4J2F6	uncultured_Caudovirales_phage	31.3	9.7e-44
VED60407.1|1602668_1604429_-	Uncharacterised protein	NA	A0A2H4J9U4	uncultured_Caudovirales_phage	42.0	3.5e-115
VED60408.1|1604508_1606749_-	Transposase and inactivated derivatives	NA	A0A2H4J7G6	uncultured_Caudovirales_phage	43.7	6.2e-125
VED60409.1|1606745_1607213_-	homeo-like domain protein	NA	A1EAE0	Streptococcus_phage	62.3	1.1e-36
VED60410.1|1607300_1607765_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60411.1|1607779_1608256_-	RecU	NA	A0A2H4J2G2	uncultured_Caudovirales_phage	49.0	2.5e-36
VED60412.1|1608398_1608638_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60413.1|1608678_1608825_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60414.1|1608814_1609219_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60415.1|1609273_1609546_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60416.1|1609570_1609816_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60417.1|1609822_1610134_-	Uncharacterised protein	NA	A0A2H4JCN3	uncultured_Caudovirales_phage	73.5	4.7e-39
VED60418.1|1610139_1610328_-	Uncharacterised protein	NA	Q4ZC81	Staphylococcus_virus	91.9	1.7e-23
VED60419.1|1610337_1610586_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60420.1|1610597_1610804_-	Cro/CI family transcriptional regulator	NA	A0A2H4JCF9	uncultured_Caudovirales_phage	56.9	9.3e-12
VED60421.1|1610846_1611386_-	putative dUTP pyrophosphatase, phage associated	NA	I6SB33	Staphylococcus_virus	66.1	5.0e-57
VED60422.1|1611378_1611612_-	Uncharacterised protein	NA	Q4ZC83	Staphylococcus_virus	89.1	2.7e-15
VED60423.1|1611611_1612037_-	YopX protein	NA	Q4ZC86	Staphylococcus_virus	67.6	6.8e-41
VED60424.1|1612026_1612230_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60425.1|1612216_1612498_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60426.1|1612491_1612584_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60427.1|1612591_1612816_-	putative phi ETA-like protein	NA	A0A2H4JCB3	uncultured_Caudovirales_phage	38.2	8.3e-06
VED60428.1|1612821_1613067_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60429.1|1613389_1613617_-	ssDNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	54.7	9.9e-15
VED60430.1|1613637_1613952_-	Uncharacterised protein	NA	S4V9P0	Staphylococcus_phage	35.3	1.7e-12
VED60431.1|1613944_1614172_-	hypothetical phage-related protein	NA	NA	NA	NA	NA
VED60432.1|1614149_1615409_-	prophage L54a, replicative DNA helicase	NA	A0A2H4JDA5	uncultured_Caudovirales_phage	48.3	1.1e-105
VED60433.1|1615389_1615479_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60434.1|1615618_1615780_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60435.1|1615831_1616557_-	phage protein	NA	A0A2I6PDW4	Staphylococcus_phage	57.8	2.1e-18
VED60436.1|1616773_1617337_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60437.1|1617353_1617635_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60438.1|1617769_1618603_-	recombinase, phage RecT family protein	NA	S6AVW6	Thermus_phage	42.9	3.6e-46
VED60439.1|1618619_1619591_-	putative phage-type endonuclease	NA	S6C475	Thermus_phage	47.4	2.6e-72
VED60440.1|1619725_1619893_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60441.1|1619915_1620107_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60442.1|1620090_1620315_-	Helix-turn-helix domain	NA	B3GVX4	Streptococcus_phage	46.3	8.3e-06
VED60443.1|1620327_1620483_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60444.1|1620533_1620914_+	Phage protein	NA	A0A2H4J4K9	uncultured_Caudovirales_phage	80.2	4.1e-53
VED60445.1|1620905_1621085_-	phage protein	NA	A0A2H4JDI7	uncultured_Caudovirales_phage	73.2	1.3e-09
VED60446.1|1621081_1621585_-	phage protein	NA	A0A2H4J854	uncultured_Caudovirales_phage	77.8	1.4e-64
VED60447.1|1621685_1621826_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60448.1|1621890_1622118_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED60449.1|1622138_1622276_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60450.1|1622287_1623190_-	phage protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	56.2	1.8e-35
VED60451.1|1623469_1623700_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60452.1|1623714_1623930_-	phage-like protein	NA	Q4ZA66	Staphylococcus_virus	91.2	1.8e-26
VED60453.1|1624123_1624828_+	putative phage repressor	NA	Q4ZA68	Staphylococcus_virus	70.0	7.8e-74
VED60454.1|1624838_1624994_+	phage protein	NA	A0A1X9H032	Staphylococcus_phage	59.6	5.7e-06
VED60455.1|1624980_1625169_+	phage protein	NA	U5U7D6	Staphylococcus_phage	50.0	8.8e-09
VED60456.1|1625396_1625537_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED60457.1|1625588_1626668_+	thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	51.1	5.4e-42
VED60458.1|1626768_1627116_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
VED60459.1|1627177_1627630_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED60460.1|1627626_1628724_+|integrase	integrase	integrase	A0A0S2MV79	Bacillus_phage	39.1	1.1e-61
VED60461.1|1628815_1629058_-	Uncharacterised protein family (UPF0154)	NA	NA	NA	NA	NA
VED60462.1|1629220_1631209_-	putative transketolase	NA	NA	NA	NA	NA
VED60463.1|1631417_1631660_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VED60464.1|1631816_1632050_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60465.1|1632194_1632818_+	LexA repressor	NA	A0A1B2APZ1	Phage_Wrath	62.3	5.0e-16
VED60466.1|1633159_1633843_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	NA	NA	NA	NA
VED60467.1|1633886_1634408_-	NADPH-quinone reductase	NA	NA	NA	NA	NA
VED60468.1|1634549_1635962_-	PTS system sucrose-specific transporter subunit IIBC	NA	NA	NA	NA	NA
VED60469.1|1635961_1636921_-	putative fructokinase	NA	NA	NA	NA	NA
VED60470.1|1636923_1638396_-	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
VED60471.1|1638464_1639445_-	sucrose operon repressor	NA	NA	NA	NA	NA
VED60472.1|1639641_1640577_-	SCP family extracellular protein	NA	U5Q0C0	Bacillus_phage	41.6	1.6e-18
VED60473.1|1640677_1641655_-	guanosine 5'-monophosphate oxidoreductase	NA	Q4ZCY7	Staphylococcus_virus	87.7	4.9e-167
VED60474.1|1641834_1642104_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
VED60475.1|1642794_1644252_+	putative amino acid permease	NA	NA	NA	NA	NA
VED60476.1|1644381_1644696_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED60477.1|1644755_1645559_-	putative HAD superfamily hydrolase	NA	NA	NA	NA	NA
VED60478.1|1645615_1646530_-	homoserine kinase	NA	NA	NA	NA	NA
VED60479.1|1646529_1647147_-	threonine synthase	NA	NA	NA	NA	NA
VED60480.1|1647085_1647598_-	threonine synthase	NA	NA	NA	NA	NA
VED60481.1|1647603_1648884_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
VED60482.1|1649076_1650453_+	aspartate kinase	NA	NA	NA	NA	NA
VED60483.1|1650535_1651120_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60484.1|1651215_1651680_-	DNA-binding transcriptional activator FucR	NA	NA	NA	NA	NA
VED60485.1|1651872_1652247_+	staphylococcal accessory regulator family protein	NA	NA	NA	NA	NA
VED60486.1|1652497_1653358_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED60487.1|1653399_1653933_-	thermonuclease NucH/NucI	NA	A0A1P8CWK6	Bacillus_phage	48.9	6.2e-23
VED60488.1|1654061_1654256_+	membrane protein	NA	NA	NA	NA	NA
VED60489.1|1654310_1655789_-	putative cardiolipin synthase	NA	NA	NA	NA	NA
VED60490.1|1656250_1656616_+	putative MerR family transcriptional regulator	NA	NA	NA	NA	NA
VED60491.1|1656636_1657977_+	glutamine synthetase	NA	NA	NA	NA	NA
VED60492.1|1658043_1658223_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60493.1|1658390_1659176_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60494.1|1659222_1660461_-	putative aluminium resistance protein family protein	NA	NA	NA	NA	NA
VED60495.1|1660466_1661723_-	GTP-binding protein HflX	NA	NA	NA	NA	NA
VED60496.1|1661867_1662341_+	putative glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	40.5	1.1e-26
VED60497.1|1663198_1663756_-	Uncharacterised protein	NA	W5R8Q1	Staphylococcus_phage	42.5	9.2e-38
VED60498.1|1664396_1665830_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	Q4ZCC3	Staphylococcus_virus	82.1	7.0e-239
VED60499.1|1665810_1666233_-|holin	holin, phage phi LC3 family	holin	Q4ZCC5	Staphylococcus_virus	90.0	1.1e-64
VED60500.1|1666277_1666673_-	hypothetical phage membrane protein	NA	A0A1D6Z274	Staphylococcus_phage	74.8	1.0e-46
VED60501.1|1666656_1667073_-	hypothetical phage membrane protein	NA	A0A1D6Z278	Staphylococcus_phage	59.1	3.5e-42
VED60502.1|1667111_1667264_-	phage protein	NA	A0A1W6JQ64	Staphylococcus_phage	90.0	2.1e-21
VED60503.1|1667265_1667667_-	Uncharacterized conserved protein	NA	A0A1W6JQ86	Staphylococcus_phage	83.1	6.2e-36
VED60504.1|1667680_1669186_-	phage protein	NA	A0A1W6JQ87	Staphylococcus_phage	72.5	1.0e-147
VED60505.1|1669197_1671813_-	Putative major teichoic acid biosynthesis protein C	NA	A0A2H4J2T1	uncultured_Caudovirales_phage	76.7	0.0e+00
VED60506.1|1671827_1672397_-	Uncharacterised protein	NA	A0A1W6JQ70	Staphylococcus_phage	67.5	3.0e-76
VED60507.1|1672389_1673979_-|tail	prophage endopeptidase tail family protein	tail	A0A2H4JCJ3	uncultured_Caudovirales_phage	86.7	1.1e-274
VED60508.1|1673988_1674825_-|tail	phage tail family protein	tail	A0A2H4JFA2	uncultured_Caudovirales_phage	68.8	9.2e-98
VED60509.1|1674827_1680641_-|tail	phage tail length tape-measure protein	tail	A0A2I6PDS2	Staphylococcus_phage	39.4	1.7e-219
VED60510.1|1680856_1681207_-	putative gp48	NA	A0A0K1LKJ0	Staphylococcus_phage	65.5	1.9e-33
VED60511.1|1681253_1681718_-|tail	phage phiSLT minor tail protein	tail	A0A1D6Z291	Staphylococcus_phage	51.3	3.7e-32
VED60512.1|1681810_1682422_-|tail	phage major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	65.2	9.4e-76
VED60513.1|1682461_1682857_-	Bacteriophage	NA	A0A2I6PEQ4	Staphylococcus_phage	45.0	2.4e-24
VED60514.1|1682853_1683261_-	putative phiSLT protein	NA	A0A2I6PEQ0	Staphylococcus_phage	51.9	1.5e-32
VED60515.1|1683260_1683614_-	phage protein	NA	A0A2H4JHA3	uncultured_Caudovirales_phage	47.2	8.2e-08
VED60516.1|1683597_1683894_-	Bacteriophage	NA	A0A2H4JAM0	uncultured_Caudovirales_phage	47.6	1.2e-15
VED60517.1|1683965_1685093_-|capsid	Phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	76.6	1.1e-162
VED60518.1|1685114_1685840_-|protease	putative Clp protease, phage associated	protease	A0A1W6JPK0	Staphylococcus_phage	52.3	4.3e-59
VED60519.1|1685829_1687023_-|portal	putative phage portal protein	portal	A0A075M040	Staphylococcus_phage	53.1	1.0e-113
VED60520.1|1687037_1688723_-|terminase	phage terminase large subunit	terminase	A0A2H4JDH7	uncultured_Caudovirales_phage	61.2	4.0e-209
VED60521.1|1688719_1689022_-|terminase	Phage terminase, small subunit	terminase	A0A2H4JD45	uncultured_Caudovirales_phage	57.0	4.4e-18
VED60522.1|1689158_1689497_-	phage-associated homing endonuclease	NA	D2XR61	Bacillus_phage	56.9	1.1e-28
1689297:1689316	attR	TGCTAATTCTTTAATATGGT	NA	NA	NA	NA
VED60523.1|1689667_1690096_-	phage regulatory protein	NA	A7TWI7	Staphylococcus_phage	78.4	5.8e-56
VED60524.1|1690109_1690235_-	Uncharacterised protein	NA	Q4ZC78	Staphylococcus_virus	79.5	3.2e-07
VED60525.1|1690235_1690571_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60526.1|1690572_1690737_-	transcriptional activator RinB family protein	NA	Q4ZC79	Staphylococcus_virus	81.0	8.5e-16
VED60527.1|1690729_1691002_-	Uncharacterised protein	NA	Q4ZC80	Staphylococcus_virus	78.0	7.4e-33
VED60528.1|1691011_1691218_-	Cro/CI family transcriptional regulator	NA	A0A2H4JCF9	uncultured_Caudovirales_phage	55.4	4.6e-11
VED60529.1|1691214_1691469_-	Helix-turn-helix	NA	NA	NA	NA	NA
VED60530.1|1691579_1691753_-	Uncharacterised protein	NA	A0A1W6JQ45	Staphylococcus_phage	73.7	1.1e-18
VED60531.1|1691792_1692356_-	Dimeric dUTPase	NA	A0A0E3XBR0	Staphylococcus_phage	54.8	4.5e-48
VED60532.1|1692348_1692591_-	phage protein	NA	A0A2H4JHI8	uncultured_Caudovirales_phage	76.2	3.5e-26
VED60533.1|1692590_1692875_-	phage protein	NA	Q4ZC83	Staphylococcus_virus	90.0	2.7e-17
VED60534.1|1693059_1693530_-	phage protein	NA	Q4ZC89	Staphylococcus_virus	96.2	9.4e-84
VED60535.1|1693530_1694046_-	putative phage leukocidin protein	NA	Q4ZC91	Staphylococcus_virus	39.2	3.3e-21
VED60536.1|1694058_1694250_-	Uncharacterised protein	NA	Q4ZC92	Staphylococcus_virus	93.7	2.8e-26
VED60537.1|1694250_1694658_-	putative holliday junction resolvase, phage associated	NA	Q4ZC94	Staphylococcus_virus	93.3	2.8e-68
VED60538.1|1694641_1694830_-	Uncharacterised protein	NA	Q4ZC95	Staphylococcus_virus	53.2	1.3e-07
VED60539.1|1694823_1695600_-	DNA replication protein DnaC	NA	Q4ZC96	Staphylococcus_virus	99.2	1.0e-143
VED60540.1|1695601_1696387_-	phage protein	NA	Q4ZC97	Staphylococcus_virus	82.4	1.3e-114
VED60541.1|1696392_1696680_-	Predicted transcriptional regulator	NA	A0A1W6JNM9	Staphylococcus_phage	95.8	4.6e-41
VED60542.1|1696725_1697208_+	putative phi PVL-like protein	NA	A0A2H4JC39	uncultured_Caudovirales_phage	65.0	5.9e-49
VED60543.1|1697223_1697892_-	phi PV83 orf 19-like protein	NA	A1KX01	Staphylococcus_virus	68.5	4.0e-88
VED60544.1|1697902_1698466_-	Single stranded DNA-binding protein,phage-associated	NA	A7TWM8	Staphylococcus_phage	74.6	2.3e-76
VED60545.1|1698494_1699268_-	Uncharacterised protein	NA	A0A1W6JPW0	Staphylococcus_phage	81.9	8.1e-117
VED60546.1|1699264_1699750_-	phage protein	NA	W5R8N0	Staphylococcus_phage	61.3	1.8e-50
VED60547.1|1699752_1700019_-	Putative cytosolic protein	NA	A0A223LGN1	Staphylococcus_phage	40.0	4.6e-11
VED60548.1|1700122_1700338_-	Uncharacterised protein	NA	Q4ZCA4	Staphylococcus_virus	95.8	4.6e-30
VED60549.1|1700350_1700653_-	Uncharacterized protein conserved in bacteria	NA	Q4ZCA6	Staphylococcus_virus	100.0	1.0e-51
VED60550.1|1700699_1700930_+	phage protein	NA	Q4ZCA7	Staphylococcus_virus	100.0	2.5e-37
VED60551.1|1700889_1701030_-	Uncharacterised protein	NA	Q4ZCA8	Staphylococcus_virus	100.0	1.5e-18
VED60552.1|1701042_1701279_-	pathogenicity island protein	NA	Q4ZCA9	Staphylococcus_virus	100.0	3.3e-37
VED60553.1|1701279_1702053_-	anti-repressor	NA	Q4ZCB0	Staphylococcus_virus	98.8	5.6e-142
VED60554.1|1702104_1702575_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED60555.1|1702537_1702771_-	Uncharacterised protein	NA	NA	NA	NA	NA
VED60556.1|1702785_1703538_-	antirepressor	NA	S4SW96	Staphylococcus_phage	93.2	5.6e-131
VED60557.1|1703552_1703792_-	transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.9	3.9e-38
VED60558.1|1703984_1704317_+	Cro/CI family transcriptional regulator	NA	A0A2H4JC44	uncultured_Caudovirales_phage	94.5	1.0e-47
VED60559.1|1704329_1704794_+	phiSLT ORF153-like protein	NA	A0A2H4J4F2	uncultured_Caudovirales_phage	65.8	2.4e-55
VED60560.1|1704808_1705420_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	58.5	8.6e-21
VED60561.1|1705778_1706807_+	DNA integration/recombination/inversion protein	NA	Q4ZCC1	Staphylococcus_virus	99.7	7.1e-193
VED60562.1|1706818_1706998_-	putative Hfq protein	NA	NA	NA	NA	NA
VED60563.1|1706994_1707957_-|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
>prophage 5
LR134264	Staphylococcus hyicus strain NCTC7944 genome assembly, chromosome: 1	2675237	1983744	1992166	2675237		Prochlorococcus_phage(33.33%)	9	NA	NA
VED60823.1|1983744_1984311_-	putative phosphoribosylglycinamide formyltransferase PurN	NA	M4QRX9	Synechococcus_phage	40.3	2.6e-32
VED60824.1|1984307_1985348_-	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	44.1	9.1e-71
VED60825.1|1985352_1986774_-	putative amidophosphoribosyltransferase PurF	NA	A0A0M3SGR2	Mollivirus	30.8	5.6e-47
VED60826.1|1986752_1988942_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.4	7.4e-139
VED60827.1|1988934_1989606_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
VED60828.1|1989605_1989866_-	putative phosphoribosylformylglycinamidine synthase, PurS component	NA	NA	NA	NA	NA
VED60829.1|1989865_1990570_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.5	4.3e-48
VED60830.1|1990569_1991697_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
VED60831.1|1991683_1992166_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	4.7e-22
>prophage 6
LR134264	Staphylococcus hyicus strain NCTC7944 genome assembly, chromosome: 1	2675237	2276632	2289113	2675237		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
VED61080.1|2276632_2277604_-	FecCD transport family protein SstA	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.1	2.3e-132
VED61081.1|2277906_2278881_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	90.7	6.1e-170
VED61082.1|2278993_2281099_-	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.2	0.0e+00
VED61083.1|2281061_2281355_-	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	67.0	9.8e-31
VED61084.1|2282347_2283235_+	putative permease	NA	NA	NA	NA	NA
VED61085.1|2283237_2283741_+	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	70.1	6.6e-51
VED61086.1|2283923_2285447_+	putative di-/tripeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.7	7.1e-72
VED61087.1|2285741_2287244_+	putative proton-dependent oligopeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.3	3.0e-67
VED61088.1|2287370_2287907_-	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VED61089.1|2288048_2289113_-	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	24.9	6.3e-19
