assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636395.1_41665_B01	LR134268	Staphylococcus aureus strain NCTC6131 genome assembly, chromosome: 1	1	773302-773385	1	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	GTAAGCTGACTTTACGTCAGCTTCT	25	1	1	773327-773360	LR134268.1_1067328-1067361	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|79aa|up_9|LR134268.1_762383_762620_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|40aa|up_8|LR134268.1_762888_763008_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|612aa|up_7|LR134268.1_763037_764873_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|326aa|up_6|LR134268.1_764880_765858_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|612aa|up_5|LR134268.1_765874_767710_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|LR134268.1_768086_769019_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|LR134268.1_769024_769864_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|LR134268.1_769871_770357_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|LR134268.1_770364_771804_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|LR134268.1_771870_772806_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|LR134268.1_773633_774545_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|LR134268.1_774541_775537_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|LR134268.1_775647_776592_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|148aa|down_3|LR134268.1_777155_777599_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|68aa|down_4|LR134268.1_777925_778129_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|328aa|down_5|LR134268.1_778115_779099_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|51aa|down_6|LR134268.1_779091_779244_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|50aa|down_7|LR134268.1_779368_779518_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|268aa|down_8|LR134268.1_779864_780668_-	TIGR01777, Hypothetical_UPF0105_protein_Rv2216/MT2273/Mb2239	NA|196aa|down_9|LR134268.1_781365_781953_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCA_900636395.1_41665_B01	LR134268	Staphylococcus aureus strain NCTC6131 genome assembly, chromosome: 1	2	943071-943225	1,2	PILER-CR,CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTGGGGCCCCCCCCCCAACTTGCATTGCTTGTAGAATTTCATTTCGAAATTCT,TTTCGAAATTCTCTGTGTTGGGG	53,23	0	0	NA	NA	NA:NA	2,1	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|120aa|up_9|LR134268.1_929951_930311_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_8|LR134268.1_930490_931066_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_7|LR134268.1_931225_934702_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|558aa|up_6|LR134268.1_934702_936376_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|660aa|up_5|LR134268.1_936377_938357_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|LR134268.1_938522_939425_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|LR134268.1_939750_940140_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|LR134268.1_940451_941768_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|LR134268.1_941819_942644_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|LR134268.1_942757_943066_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|LR134268.1_943703_945518_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|142aa|down_1|LR134268.1_945720_946146_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|245aa|down_2|LR134268.1_946159_946894_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|496aa|down_3|LR134268.1_946839_948327_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|234aa|down_4|LR134268.1_948385_949087_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|57aa|down_5|LR134268.1_949083_949254_-	pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family	NA|187aa|down_6|LR134268.1_949627_950188_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|84aa|down_7|LR134268.1_950253_950505_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|191aa|down_8|LR134268.1_950556_951129_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|297aa|down_9|LR134268.1_951246_952137_+	pfam07690, MFS_1, Major Facilitator Superfamily
GCA_900636395.1_41665_B01	LR134268	Staphylococcus aureus strain NCTC6131 genome assembly, chromosome: 1	3	1610342-1610421	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGCCTGTAGAA	24	1	5	1610366-1610397|1610366-1610397|1610366-1610397|1610366-1610397|1610366-1610397	LR134268.1_2349536-2349505|LR134268.1_219554-219523|LR134268.1_1067308-1067339|LR134268.1_2153323-2153292|LR134268.1_2508517-2508486	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|449aa|up_9|LR134268.1_1600942_1602289_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_8|LR134268.1_1602295_1603048_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_7|LR134268.1_1603049_1603988_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_6|LR134268.1_1603991_1605131_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|96aa|up_5|LR134268.1_1605266_1605554_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|399aa|up_4|LR134268.1_1605631_1606828_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|102aa|up_3|LR134268.1_1606796_1607102_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|LR134268.1_1607170_1607797_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|LR134268.1_1607828_1608806_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|386aa|up_0|LR134268.1_1608906_1610064_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|303aa|down_0|LR134268.1_1610592_1611501_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|311aa|down_1|LR134268.1_1611482_1612415_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_2|LR134268.1_1612760_1613012_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_3|LR134268.1_1613056_1614031_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|727aa|down_4|LR134268.1_1614087_1616268_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|144aa|down_5|LR134268.1_1616293_1616725_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|226aa|down_6|LR134268.1_1616846_1617524_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_7|LR134268.1_1617572_1618289_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_8|LR134268.1_1618291_1618645_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_9|LR134268.1_1618645_1619230_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
GCA_900636395.1_41665_B01	LR134268	Staphylococcus aureus strain NCTC6131 genome assembly, chromosome: 1	4	1821210-1821296	4	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAATGCGCGTTGGGGTACGGGCCCCAACA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|75aa|up_3|LR134268.1_1817307_1817532_-,NA|148aa|up_2|LR134268.1_1818744_1819188_-,NA|101aa|down_1|LR134268.1_1822432_1822735_+	NA|348aa|up_9|LR134268.1_1810815_1811859_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|163aa|up_8|LR134268.1_1812340_1812829_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	NA|339aa|up_7|LR134268.1_1812825_1813842_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_6|LR134268.1_1814484_1814799_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_5|LR134268.1_1814798_1816091_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_4|LR134268.1_1816177_1817032_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_3|LR134268.1_1817307_1817532_-	NA	NA|148aa|up_2|LR134268.1_1818744_1819188_-	NA	NA|212aa|up_1|LR134268.1_1819483_1820119_+	pfam02517, Abi, CAAX protease self-immunity	NA|179aa|up_0|LR134268.1_1820285_1820822_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|LR134268.1_1821460_1822174_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|LR134268.1_1822432_1822735_+	NA	NA|122aa|down_2|LR134268.1_1822989_1823355_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|LR134268.1_1823351_1823705_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|LR134268.1_1823954_1824788_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|LR134268.1_1824999_1825908_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|LR134268.1_1826032_1827226_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|LR134268.1_1827596_1829189_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|257aa|down_8|LR134268.1_1829569_1830340_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|160aa|down_9|LR134268.1_1830320_1830800_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCA_900636395.1_41665_B01	LR134268	Staphylococcus aureus strain NCTC6131 genome assembly, chromosome: 1	5	2276473-2276611	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	51	1	1	2276524-2276560	LR134268.1_2276435-2276471	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|93aa|up_7|LR134268.1_2268519_2268798_+,NA|67aa|up_1|LR134268.1_2275160_2275361_+,NA|60aa|up_0|LR134268.1_2276175_2276355_-,NA	NA|808aa|up_9|LR134268.1_2264168_2266592_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_8|LR134268.1_2266790_2267645_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|LR134268.1_2268519_2268798_+	NA	NA|506aa|up_6|LR134268.1_2268807_2270325_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|LR134268.1_2270556_2271372_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|LR134268.1_2271666_2272092_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|LR134268.1_2272466_2273171_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|LR134268.1_2273207_2274872_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|67aa|up_1|LR134268.1_2275160_2275361_+	NA	NA|60aa|up_0|LR134268.1_2276175_2276355_-	NA	NA|133aa|down_0|LR134268.1_2278387_2278786_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|LR134268.1_2278799_2279237_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|LR134268.1_2279476_2280280_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|LR134268.1_2280284_2281091_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|LR134268.1_2281080_2281941_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|LR134268.1_2281937_2282747_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|LR134268.1_2283284_2283653_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|266aa|down_7|LR134268.1_2283669_2284467_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|64aa|down_8|LR134268.1_2284423_2284615_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_9|LR134268.1_2284689_2285079_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
GCA_900636395.1_41665_B01	LR134268	Staphylococcus aureus strain NCTC6131 genome assembly, chromosome: 1	6	2467801-2467898	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CGTCTTCTTCAAATTTATTTGTTAGAAAGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_4|LR134268.1_2463489_2463594_+,NA|57aa|up_3|LR134268.1_2464042_2464213_+,NA|60aa|down_1|LR134268.1_2469541_2469721_-	NA|417aa|up_9|LR134268.1_2458201_2459452_+	pfam02388, FemAB, FemAB family	NA|244aa|up_8|LR134268.1_2459548_2460280_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_7|LR134268.1_2460276_2460996_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_6|LR134268.1_2460976_2461756_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_5|LR134268.1_2461876_2463316_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_4|LR134268.1_2463489_2463594_+	NA	NA|57aa|up_3|LR134268.1_2464042_2464213_+	NA	NA|493aa|up_2|LR134268.1_2464209_2465688_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|229aa|up_1|LR134268.1_2465715_2466402_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|LR134268.1_2466728_2467595_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|437aa|down_0|LR134268.1_2468291_2469602_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|60aa|down_1|LR134268.1_2469541_2469721_-	NA	NA|322aa|down_2|LR134268.1_2470114_2471080_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|LR134268.1_2471647_2472595_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|LR134268.1_2472596_2473574_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|LR134268.1_2473632_2474100_-	pfam06177, QueT, QueT transporter	NA|149aa|down_6|LR134268.1_2474110_2474557_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|90aa|down_7|LR134268.1_2474532_2474802_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|146aa|down_8|LR134268.1_2475126_2475564_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|138aa|down_9|LR134268.1_2475512_2475926_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
