The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134282	Streptococcus equinus strain NCTC8140 genome assembly, chromosome: 1	1873522	407047	416352	1873522		Bacillus_virus(50.0%)	10	NA	NA
VED90791.1|407047_408391_+	ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	29.7	3.2e-44
VED90792.1|408556_409381_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VED90793.1|409412_410216_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VED90794.1|410215_410959_+	polar amino acid transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	6.1e-29
VED90795.1|411041_411266_+	membrane protein	NA	NA	NA	NA	NA
VED90796.1|411332_412247_+	NADPH-dependent thioredoxin reductase	NA	G3MA85	Bacillus_virus	53.7	1.2e-87
VED90797.1|412279_412390_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED90798.1|412474_413935_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	41.6	8.5e-99
VED90799.1|413934_414759_+	NAD+ synthase	NA	G3MA24	Bacillus_virus	56.4	4.8e-75
VED90800.1|415014_416352_+	bleomycin hydrolase	NA	R4TV59	Phaeocystis_globosa_virus	34.2	7.8e-67
>prophage 2
LR134282	Streptococcus equinus strain NCTC8140 genome assembly, chromosome: 1	1873522	498711	507938	1873522	integrase	Streptococcus_phage(88.89%)	16	489863:489880	510664:510681
489863:489880	attL	TTATTATTCGAAAAAAAT	NA	NA	NA	NA
VED90890.1|498711_499875_-|integrase	phage integrase family recombinase	integrase	A0A1X9I6A9	Streptococcus_phage	63.3	4.6e-140
VED90892.1|500188_501154_-	Protein of uncharacterised function (DUF3644)	NA	A0A0N9RUA4	Staphylococcus_phage	53.2	2.4e-89
VED90894.1|501189_501762_-	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	31.6	1.3e-15
VED90896.1|501916_502102_+	repressor-related protein	NA	A0A1X9I5U7	Streptococcus_phage	50.0	5.3e-06
VED90898.1|502360_502663_+	phage protein	NA	NA	NA	NA	NA
VED90899.1|502679_502874_+	phage membrane protein	NA	NA	NA	NA	NA
VED90901.1|502889_503123_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED90902.1|503124_503391_+	phage protein	NA	A0A1X9I6M4	Streptococcus_phage	73.9	7.5e-30
VED90904.1|503404_504256_+	replication protein	NA	A0A2I6QQV2	Streptococcus_phage	71.2	1.6e-94
VED90906.1|504272_505124_+	putative phage replication protein	NA	A0A1X9I6C4	Streptococcus_phage	56.3	1.0e-80
VED90908.1|505240_505816_+	Prophage ps3 protein 07	NA	NA	NA	NA	NA
VED90910.1|505808_506192_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED90912.1|506244_506733_+	phage protein	NA	NA	NA	NA	NA
VED90914.1|506817_507012_+	Uncharacterised protein	NA	M1Q1V7	Streptococcus_phage	79.7	2.9e-23
VED90915.1|507107_507521_+	phage protein	NA	NA	NA	NA	NA
VED90917.1|507734_507938_+	Uncharacterised protein	NA	A0A1X9I5Q7	Streptococcus_phage	69.2	3.4e-22
510664:510681	attR	ATTTTTTTCGAATAATAA	NA	NA	NA	NA
>prophage 3
LR134282	Streptococcus equinus strain NCTC8140 genome assembly, chromosome: 1	1873522	593973	604069	1873522		Staphylococcus_phage(50.0%)	10	NA	NA
VED91065.1|593973_595104_+	acetylornithine aminotransferase	NA	A0A249XSK4	Mycobacterium_phage	25.2	4.5e-15
VED91067.1|595198_595756_+	oxidoreductase-associated protein	NA	NA	NA	NA	NA
VED91069.1|596247_597303_+	riboflavin-specific deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	32.3	1.3e-40
VED91071.1|597302_597905_+	riboflavin synthase (alpha subunit)	NA	A0A2H4PQS5	Staphylococcus_phage	38.4	1.4e-31
VED91073.1|597905_599084_+	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	50.8	1.1e-104
VED91075.1|599095_599557_+	riboflavin synthase subunit beta	NA	A0A2H4PQS3	Staphylococcus_phage	54.7	1.5e-41
VED91077.1|599621_600188_-	putative proton-coupled thiamine transporter YuaJ	NA	NA	NA	NA	NA
VED91079.1|600432_601395_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.8	1.8e-129
VED91081.1|601621_603781_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.9	1.4e-262
VED91083.1|603841_604069_-	glutaredoxin-like protein	NA	V5USF1	Enterococcus_phage	43.8	5.1e-11
>prophage 4
LR134282	Streptococcus equinus strain NCTC8140 genome assembly, chromosome: 1	1873522	863779	902997	1873522	tail,transposase,protease,integrase	Streptococcus_phage(44.44%)	40	855663:855678	895461:895476
855663:855678	attL	TTTATTTGATTGAATT	NA	NA	NA	NA
VED91559.1|863779_864667_+|integrase	integrase/recombinase XerC	integrase	H7BW99	unidentified_phage	40.9	3.5e-63
VED91562.1|864713_865148_+	putative transcriptional regulator	NA	NA	NA	NA	NA
VED91564.1|865238_865592_+	Uncharacterized conserved protein, contains double-stranded beta-helix domain	NA	NA	NA	NA	NA
VED91566.1|865594_866347_+	Bacteriophage protein gp37	NA	A0A142F2K7	Mycobacterium_phage	28.6	2.6e-11
VED91568.1|866334_867249_+	radical SAM superfamily protein	NA	NA	NA	NA	NA
VED91570.1|867331_867628_+|tail	tail tape measure protein	tail	E3W8G4	Leuconostoc_phage	60.4	6.5e-06
VED91572.1|868009_868495_+	Putative Nudix hydrolase	NA	NA	NA	NA	NA
VED91574.1|868623_869085_+	Response regulator of the LytR/AlgR family	NA	NA	NA	NA	NA
VED91576.1|869081_869819_+	integral membrane protein	NA	NA	NA	NA	NA
VED91580.1|869963_870731_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VED91582.1|870758_871499_+	putative alpha/beta superfamily hydrolase	NA	NA	NA	NA	NA
VED91584.1|871555_872389_+|protease	CAAX amino terminal protease	protease	NA	NA	NA	NA
VED91586.1|872408_873080_+	Mn2+-dependent serine/threonine protein kinase	NA	NA	NA	NA	NA
VED91588.1|873280_874177_+	Rgg/GadR/MutR family transcriptional activator	NA	NA	NA	NA	NA
VED91590.1|874231_878566_+	glucosyl transferase	NA	NA	NA	NA	NA
VED91592.1|878765_879401_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VED91594.1|879650_879824_+	MATE family multidrug efflux pump	NA	NA	NA	NA	NA
VED91595.1|881018_881111_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED91597.1|881276_881675_+	Putative ATP-dependent DNA helicase yjcD	NA	NA	NA	NA	NA
VED91599.1|881743_883876_+	putative OLD family ATP-dependent endonuclease	NA	NA	NA	NA	NA
VED91601.1|883872_885606_+	DNA helicase II / ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	27.6	4.1e-15
VED91603.1|885620_886166_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED91605.1|886146_886986_+	Predicted metal-binding protein related to the C-terminal domain of SecA	NA	NA	NA	NA	NA
VED91606.1|887215_887581_+	LexA repressor	NA	NA	NA	NA	NA
VED91607.1|887577_887817_+	LexA repressor	NA	NA	NA	NA	NA
VED91609.1|888077_889403_+	MATE family multidrug efflux pump	NA	NA	NA	NA	NA
VED91610.1|889545_890136_+	dihydroxyacetone kinase domain-containing protein	NA	NA	NA	NA	NA
VED91611.1|890128_890506_+	phospho transferase mannnose-specific family component IIA	NA	NA	NA	NA	NA
VED91613.1|890632_891319_+	Pleiotropic regulator of exopolysaccharide synthesis, competence and biofilm formation Ftr, XRE family	NA	E8ZDN4	Streptococcus_phage	49.6	1.5e-58
VED91614.1|891320_891524_+	Uncharacterised protein	NA	D0R0A4	Streptococcus_phage	47.7	4.6e-11
VED91615.1|891524_892940_+	ImpB/MucB/SamB family protein	NA	M1Q231	Streptococcus_phage	73.4	3.4e-201
VED91617.1|892941_893301_+	Uncharacterised protein	NA	E4ZFJ1	Streptococcus_phage	48.7	6.8e-18
VED91618.1|893322_893484_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED91619.1|893628_895368_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VED91620.1|895402_897103_+	Yga2G	NA	NA	NA	NA	NA
895461:895476	attR	AATTCAATCAAATAAA	NA	NA	NA	NA
VED91621.1|897160_897994_+	Uncharacterised protein	NA	NA	NA	NA	NA
VED91623.1|898194_898893_+	GntR family transcriptional regulator	NA	A0A2H5BLU5	Streptomyces_phage	36.7	2.0e-05
VED91624.1|899194_899527_+	putative DNA-binding protein	NA	NA	NA	NA	NA
VED91625.1|899573_901139_+	Signal recognition particle subunit Ffh SRP54	NA	NA	NA	NA	NA
VED91626.1|901251_902997_+|transposase	transposase, Gram-positive bacteria	transposase	NA	NA	NA	NA
>prophage 5
LR134282	Streptococcus equinus strain NCTC8140 genome assembly, chromosome: 1	1873522	1084197	1096485	1873522	tRNA	Bacillus_phage(33.33%)	12	NA	NA
VED91965.1|1084197_1084608_-	polypeptide deformylase	NA	A0A2I7R224	Vibrio_phage	38.1	4.9e-12
VED91967.1|1084610_1085114_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VED91969.1|1085266_1086616_-	glutamate dehydrogenase	NA	NA	NA	NA	NA
VED91971.1|1086845_1087343_+	membrane protein	NA	NA	NA	NA	NA
VED91973.1|1087381_1087873_-	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	62.3	7.4e-47
VED91995.1|1087888_1088602_-	radical SAM domain-containing protein	NA	E7DN68	Pneumococcus_phage	48.0	9.6e-64
VED91997.1|1088594_1089041_-	6-pyruvoyl tetrahydrobiopterin synthase	NA	J9PV91	Bacillus_phage	58.2	9.6e-46
VED91999.1|1089040_1089694_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	53.5	2.0e-60
VED92001.1|1089859_1091629_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	5.2e-58
VED92003.1|1091631_1093371_-	ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	1.5e-38
VED92005.1|1093414_1095283_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	32.5	3.5e-65
VED92007.1|1095279_1096485_-|tRNA	tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	48.5	4.2e-43
>prophage 6
LR134282	Streptococcus equinus strain NCTC8140 genome assembly, chromosome: 1	1873522	1446810	1456547	1873522		Streptococcus_phage(75.0%)	12	NA	NA
VED92615.1|1446810_1447902_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	82.0	3.5e-174
VED92617.1|1448037_1448667_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
VED92619.1|1448778_1449120_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA	NA
VED92621.1|1449151_1450387_-	ammonium transporter	NA	NA	NA	NA	NA
VED92623.1|1450708_1451575_-	putative S-adenosyl-methionine-dependent methyl transferase, YraL family	NA	M1PLC5	Streptococcus_phage	76.0	6.1e-121
VED92625.1|1451584_1451905_-	DNA replication intiation control protein	NA	M1PFV3	Streptococcus_phage	62.3	9.1e-30
VED92627.1|1451897_1452698_-	putative PSP1-like protein	NA	NA	NA	NA	NA
VED92629.1|1452694_1453570_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	49.7	2.8e-73
VED92631.1|1453583_1454216_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	65.7	5.5e-71
VED92633.1|1454305_1454965_-	acetoin utilization protein AcuB	NA	M1NSC5	Streptococcus_phage	62.8	9.8e-71
VED92635.1|1455072_1455783_-	branched-chain amino acid transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.0	2.4e-14
VED92637.1|1455782_1456547_-	branched-chain amino acid transport system ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.8	5.5e-17
>prophage 7
LR134282	Streptococcus equinus strain NCTC8140 genome assembly, chromosome: 1	1873522	1850343	1858465	1873522		Staphylococcus_phage(16.67%)	9	NA	NA
VED93353.1|1850343_1850979_-	transglycosylase	NA	Q4Z8Z7	Staphylococcus_phage	76.6	4.5e-20
VED93355.1|1851192_1851786_-	LysM repeat-containing protein	NA	A0A288TY55	Enterococcus_phage	78.3	8.9e-23
VED93357.1|1851923_1852721_-	cobalt/nickel transport system permease protein	NA	NA	NA	NA	NA
VED93359.1|1852713_1853556_-	cobalt/nickel transport system ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.0	5.2e-16
VED93362.1|1853531_1854374_-	cobalt/nickel transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.4	2.9e-19
VED93364.1|1854370_1854925_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
VED93366.1|1854934_1855864_-	putative membrane associated protein	NA	NA	NA	NA	NA
VED93368.1|1855930_1857220_-	Peptidase, M16 family	NA	K7Z7Q1	Megavirus	29.5	3.1e-20
VED93370.1|1857220_1858465_-	putative Zn-dependent peptidase	NA	A0A1X9I714	Streptococcus_phage	43.4	1.5e-91
