assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636565.1_42880_B01	LR134292	Streptococcus equinus strain NCTC10389 genome assembly, chromosome: 1	1	638897-638988	1	CRISPRCasFinder	no	csm6	DEDDh,cas3,csa3,DinG,WYL,csm6,csn2,cas2,cas1,cas9	Type III-A	GGCTCTTTATCAACTGTAGTGGGT	24	0	0	NA	NA	NA	1	1	TypeIII-A	DEDDh,cas3,csa3,DinG,WYL,csm6,csn2,cas2,cas1,cas9	NA,NA|68aa|down_3|LR134292.1_641803_642007_-,NA|102aa|down_4|LR134292.1_642530_642836_-,NA|44aa|down_7|LR134292.1_645736_645868_+,NA|113aa|down_8|LR134292.1_645848_646187_+	NA|120aa|up_9|LR134292.1_629676_630036_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|509aa|up_8|LR134292.1_630600_632127_+	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|244aa|up_7|LR134292.1_632132_632864_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|230aa|up_6|LR134292.1_632872_633562_+	TIGR01006, Capsular_polysaccharide_biosynthesis_protein_CapA, polysaccharide export protein, MPA1 family, Gram-positive type	NA|248aa|up_5|LR134292.1_633576_634320_+	TIGR01007, Tyrosine-protein_kinase_CpsD, capsular exopolysaccharide family	NA|458aa|up_4|LR134292.1_634390_635764_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|355aa|up_3|LR134292.1_635801_636866_+	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs	NA|155aa|up_2|LR134292.1_636891_637356_+	pfam08660, Alg14, Oligosaccharide biosynthesis protein Alg14 like	NA|168aa|up_1|LR134292.1_637369_637873_+	COG5017, COG5017, Uncharacterized conserved protein [Function unknown]	NA|286aa|up_0|LR134292.1_637865_638723_+	pfam14305, ATPgrasp_TupA, TupA-like ATPgrasp	NA|419aa|down_0|LR134292.1_638997_640254_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|154aa|down_1|LR134292.1_640509_640971_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|100aa|down_2|LR134292.1_640988_641288_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|68aa|down_3|LR134292.1_641803_642007_-	NA	NA|102aa|down_4|LR134292.1_642530_642836_-	NA	NA|494aa|down_5|LR134292.1_642864_644346_-	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional	NA|285aa|down_6|LR134292.1_644612_645467_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|44aa|down_7|LR134292.1_645736_645868_+	NA	NA|113aa|down_8|LR134292.1_645848_646187_+	NA	NA|506aa|down_9|LR134292.1_646601_648119_+	PRK10811, rne, ribonuclease E; Reviewed
GCA_900636565.1_42880_B01	LR134292	Streptococcus equinus strain NCTC10389 genome assembly, chromosome: 1	2	1078548-1080562	2,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	DEDDh,cas3,csa3,DinG,WYL,csm6,csn2,cas2,cas1,cas9	Type II-A,Type II-C,Type II-B	GTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC,GTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC,GTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC,GTTTTACGGTTACTTAAATCTTGAGAGTACAAAAAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	30,30,29,29	30	TypeII-A,TypeII-C,TypeII-B	DEDDh,cas3,csa3,DinG,WYL,csm6,csn2,cas2,cas1,cas9	NA|34aa|up_8|LR134292.1_1070045_1070147_-,NA|65aa|up_7|LR134292.1_1070174_1070369_-,NA|79aa|up_6|LR134292.1_1070408_1070645_-,NA	NA|235aa|up_9|LR134292.1_1068926_1069631_-	pfam02517, Abi, CAAX protease self-immunity	NA|34aa|up_8|LR134292.1_1070045_1070147_-	NA	NA|65aa|up_7|LR134292.1_1070174_1070369_-	NA	NA|79aa|up_6|LR134292.1_1070408_1070645_-	NA	NA|456aa|up_5|LR134292.1_1070676_1072044_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|490aa|up_4|LR134292.1_1072157_1073627_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|275aa|up_3|LR134292.1_1073777_1074602_-	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|159aa|up_2|LR134292.1_1074598_1075075_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|428aa|up_1|LR134292.1_1075067_1076351_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|612aa|up_0|LR134292.1_1076484_1078320_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	csn2|350aa|down_0|LR134292.1_1080626_1081676_-	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	cas2|103aa|down_1|LR134292.1_1081672_1081981_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|304aa|down_2|LR134292.1_1081997_1082909_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1131aa|down_3|LR134292.1_1083080_1086473_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|139aa|down_4|LR134292.1_1086578_1086995_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|85aa|down_5|LR134292.1_1087097_1087352_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|220aa|down_6|LR134292.1_1087540_1088200_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|258aa|down_7|LR134292.1_1088189_1088963_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|243aa|down_8|LR134292.1_1089035_1089764_-	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|377aa|down_9|LR134292.1_1089768_1090899_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase
GCA_900636565.1_42880_B01	LR134292	Streptococcus equinus strain NCTC10389 genome assembly, chromosome: 1	3	1283031-1283312	3	CRISPRCasFinder	no	csa3	DEDDh,cas3,csa3,DinG,WYL,csm6,csn2,cas2,cas1,cas9	Type I-A	CTACCATTCTATTTTGAATGGTGCTAAAAC	30	0	0	NA	NA	NA	4	4	Orphan	DEDDh,cas3,csa3,DinG,WYL,csm6,csn2,cas2,cas1,cas9	NA|63aa|up_9|LR134292.1_1277086_1277275_-,NA|52aa|up_8|LR134292.1_1277294_1277450_-,NA|92aa|up_5|LR134292.1_1280207_1280483_-,NA|48aa|up_4|LR134292.1_1280487_1280631_-,NA|65aa|up_3|LR134292.1_1280644_1280839_-,NA|62aa|up_1|LR134292.1_1281749_1281935_-,NA|554aa|down_1|LR134292.1_1284712_1286374_-	NA|63aa|up_9|LR134292.1_1277086_1277275_-	NA	NA|52aa|up_8|LR134292.1_1277294_1277450_-	NA	NA|507aa|up_7|LR134292.1_1277790_1279311_-	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain	NA|296aa|up_6|LR134292.1_1279323_1280211_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|92aa|up_5|LR134292.1_1280207_1280483_-	NA	NA|48aa|up_4|LR134292.1_1280487_1280631_-	NA	NA|65aa|up_3|LR134292.1_1280644_1280839_-	NA	NA|205aa|up_2|LR134292.1_1281071_1281686_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|62aa|up_1|LR134292.1_1281749_1281935_-	NA	NA|302aa|up_0|LR134292.1_1282105_1283011_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|390aa|down_0|LR134292.1_1283368_1284538_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|554aa|down_1|LR134292.1_1284712_1286374_-	NA	NA|208aa|down_2|LR134292.1_1286467_1287091_-	pfam13630, SdpI, SdpI/YfhL protein family	csa3|94aa|down_3|LR134292.1_1287077_1287359_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|276aa|down_4|LR134292.1_1287539_1288367_+	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases	NA|119aa|down_5|LR134292.1_1288407_1288764_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|393aa|down_6|LR134292.1_1288851_1290030_-	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|364aa|down_7|LR134292.1_1290125_1291217_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|210aa|down_8|LR134292.1_1291352_1291982_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|114aa|down_9|LR134292.1_1292095_1292437_-	pfam00543, P-II, Nitrogen regulatory protein P-II
