assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	1	160689-160959	1	PILER-CR	no		PD-DExK,DEDDh,WYL,csa3,DinG	Orphan	AACCACCACACATACCCGTAGGATGGGTGCAGCGCGGCACACCCGCCAGAGAAACACCAGCGC	63	2	2	160752-160792|160856-160896	LR134302.1_160960-161000|LR134302.1_160960-161000	NA	2	2	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA	NA|230aa|up_9|LR134302.1_153136_153826_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed	NA|262aa|up_8|LR134302.1_153825_154611_-	PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed	NA|254aa|up_7|LR134302.1_154675_155437_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|490aa|up_6|LR134302.1_155470_156940_-	PRK12637, flgE, flagellar hook protein FlgE; Provisional	NA|233aa|up_5|LR134302.1_157011_157710_-	PRK12633, flgD, flagellar basal body rod modification protein; Provisional	NA|140aa|up_4|LR134302.1_157729_158149_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|136aa|up_3|LR134302.1_158171_158579_-	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|239aa|up_2|LR134302.1_158756_159473_+	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA	NA|98aa|up_1|LR134302.1_159600_159894_+	PRK10810, PRK10810, anti-sigma-28 factor FlgM	NA|159aa|up_0|LR134302.1_159931_160408_+	pfam05130, FlgN, FlgN protein	NA|1014aa|down_0|LR134302.1_161134_164176_-	PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional	NA|707aa|down_1|LR134302.1_164172_166293_-	PRK06012, flhA, flagellar type III secretion system protein FlhA	NA|385aa|down_2|LR134302.1_166296_167451_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|515aa|down_3|LR134302.1_167561_169106_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|212aa|down_4|LR134302.1_169257_169893_-	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional	NA|130aa|down_5|LR134302.1_169901_170291_-	PRK10610, PRK10610, chemotaxis protein CheY	NA|353aa|down_6|LR134302.1_170341_171400_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|285aa|down_7|LR134302.1_171420_172275_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|568aa|down_8|LR134302.1_172283_173987_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|167aa|down_9|LR134302.1_174080_174581_-	PRK10612, PRK10612, chemotaxis protein CheW
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	2	450729-450852	1	CRISPRCasFinder	no	PD-DExK	PD-DExK,DEDDh,WYL,csa3,DinG	Unclear	TGGGGGTGTTCTTGCGTTGATTTTGCCGCGCTTCACCCATCCTACGG	47	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA|99aa|down_3|LR134302.1_454526_454823_-	NA|210aa|up_9|LR134302.1_440339_440969_-	pfam13649, Methyltransf_25, Methyltransferase domain	PD-DExK|182aa|up_8|LR134302.1_440965_441511_-	pfam06250, DUF1016, Protein of unknown function (DUF1016)	NA|619aa|up_7|LR134302.1_441607_443464_-	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|541aa|up_6|LR134302.1_443607_445230_-	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|248aa|up_5|LR134302.1_445331_446075_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|318aa|up_4|LR134302.1_446020_446974_-	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR	NA|265aa|up_3|LR134302.1_447111_447906_+	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|428aa|up_2|LR134302.1_448022_449306_+	PRK12890, PRK12890, allantoate amidohydrolase; Reviewed	NA|112aa|up_1|LR134302.1_449409_449745_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|323aa|up_0|LR134302.1_449741_450710_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|295aa|down_0|LR134302.1_450943_451828_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|243aa|down_1|LR134302.1_451818_452547_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|501aa|down_2|LR134302.1_452942_454445_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|99aa|down_3|LR134302.1_454526_454823_-	NA	NA|211aa|down_4|LR134302.1_454822_455455_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|274aa|down_5|LR134302.1_455682_456504_+	pfam01904, DUF72, Protein of unknown function DUF72	NA|453aa|down_6|LR134302.1_456507_457866_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|888aa|down_7|LR134302.1_458010_460674_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|153aa|down_8|LR134302.1_460901_461360_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|235aa|down_9|LR134302.1_461356_462061_+	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	3	899621-899722	2	CRISPRCasFinder	no		PD-DExK,DEDDh,WYL,csa3,DinG	Orphan	CACCGCAAGCCCGTAGGATGGGTG	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA	NA|299aa|up_9|LR134302.1_888847_889744_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|339aa|up_8|LR134302.1_889743_890760_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|521aa|up_7|LR134302.1_890759_892322_-	cd08515, PBP2_NikA_DppA_OppA_like_10, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|166aa|up_6|LR134302.1_892548_893046_+	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons	NA|237aa|up_5|LR134302.1_893061_893772_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|163aa|up_4|LR134302.1_893794_894283_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|351aa|up_3|LR134302.1_894328_895381_-	PRK00283, xerD, tyrosine recombinase	NA|305aa|up_2|LR134302.1_895377_896292_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|561aa|up_1|LR134302.1_896428_898111_+	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated	NA|398aa|up_0|LR134302.1_898243_899437_+	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|148aa|down_0|LR134302.1_899789_900233_-	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function	NA|417aa|down_1|LR134302.1_900313_901564_-	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein	NA|476aa|down_2|LR134302.1_901617_903045_-	TIGR03225, benzo_boxB, benzoyl-CoA oxygenase, B subunit	NA|579aa|down_3|LR134302.1_903131_904868_-	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional	NA|303aa|down_4|LR134302.1_904985_905894_-	PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed	NA|159aa|down_5|LR134302.1_906072_906549_+	pfam16155, DUF4863, Domain of unknown function (DUF4863)	NA|540aa|down_6|LR134302.1_906624_908244_+	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)	NA|387aa|down_7|LR134302.1_908325_909486_+	cd20014, PBP1_RPA0668_benzoate-like, type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs	NA|294aa|down_8|LR134302.1_909511_910393_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|357aa|down_9|LR134302.1_910395_911466_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	4	1078398-1078498	3	CRISPRCasFinder	no		PD-DExK,DEDDh,WYL,csa3,DinG	Orphan	CGTAGGATGGGTGAAGCGCGAAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA	NA|461aa|up_9|LR134302.1_1068806_1070189_+	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]	NA|177aa|up_8|LR134302.1_1070687_1071218_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|323aa|up_7|LR134302.1_1071353_1072322_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|372aa|up_6|LR134302.1_1072424_1073540_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|314aa|up_5|LR134302.1_1073601_1074543_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|159aa|up_4|LR134302.1_1074547_1075024_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|123aa|up_3|LR134302.1_1075122_1075491_+	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|171aa|up_2|LR134302.1_1075517_1076030_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|272aa|up_1|LR134302.1_1076031_1076847_+	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|426aa|up_0|LR134302.1_1076908_1078186_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|243aa|down_0|LR134302.1_1078575_1079304_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|1215aa|down_1|LR134302.1_1079300_1082945_-	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|622aa|down_2|LR134302.1_1082971_1084837_-	PRK08186, PRK08186, allophanate hydrolase; Provisional	NA|418aa|down_3|LR134302.1_1085218_1086472_+	pfam13433, Peripla_BP_5, Periplasmic binding protein domain	NA|544aa|down_4|LR134302.1_1086483_1088115_+	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB	NA|376aa|down_5|LR134302.1_1088111_1089239_+	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC	NA|280aa|down_6|LR134302.1_1089235_1090075_+	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD	NA|233aa|down_7|LR134302.1_1090077_1090776_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|146aa|down_8|LR134302.1_1090883_1091321_+	pfam11162, DUF2946, Protein of unknown function (DUF2946)	NA|732aa|down_9|LR134302.1_1091561_1093757_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	5	1813733-1813830	4	CRISPRCasFinder	no		PD-DExK,DEDDh,WYL,csa3,DinG	Orphan	CCGTAGGATGGGTGCAGCGCGGCA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA|206aa|down_0|LR134302.1_1813984_1814602_-	NA|592aa|up_9|LR134302.1_1798319_1800095_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|302aa|up_8|LR134302.1_1800131_1801037_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|426aa|up_7|LR134302.1_1801617_1802895_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|300aa|up_6|LR134302.1_1802976_1803876_-	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|261aa|up_5|LR134302.1_1803924_1804707_-	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|372aa|up_4|LR134302.1_1804824_1805940_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|361aa|up_3|LR134302.1_1806092_1807175_-	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|425aa|up_2|LR134302.1_1807482_1808757_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1072aa|up_1|LR134302.1_1808783_1811999_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|493aa|up_0|LR134302.1_1812065_1813544_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|206aa|down_0|LR134302.1_1813984_1814602_-	NA	NA|312aa|down_1|LR134302.1_1814601_1815537_-	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|359aa|down_2|LR134302.1_1815721_1816798_+	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase	NA|233aa|down_3|LR134302.1_1816938_1817637_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|213aa|down_4|LR134302.1_1817648_1818287_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|126aa|down_5|LR134302.1_1818301_1818679_+	smart00830, CM_2, Chorismate mutase type II	NA|343aa|down_6|LR134302.1_1818671_1819700_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|451aa|down_7|LR134302.1_1819731_1821084_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|409aa|down_8|LR134302.1_1821103_1822330_+	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|392aa|down_9|LR134302.1_1822442_1823618_+	cd06359, PBP1_Nba-like, type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	6	2114724-2114847	5	CRISPRCasFinder	no		PD-DExK,DEDDh,WYL,csa3,DinG	Orphan	CACAATCCGCATAAAAACACCACCCCACGCCGCGCGAAACCCATCA	46	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA|83aa|up_2|LR134302.1_2111405_2111654_+,NA	NA|387aa|up_9|LR134302.1_2104992_2106153_-	COG3970, COG3970, Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]	NA|253aa|up_8|LR134302.1_2106287_2107046_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|104aa|up_7|LR134302.1_2107326_2107638_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|87aa|up_6|LR134302.1_2107672_2107933_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|379aa|up_5|LR134302.1_2108121_2109258_+	PRK12299, obgE, GTPase CgtA; Reviewed	NA|379aa|up_4|LR134302.1_2109313_2110450_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|226aa|up_3|LR134302.1_2110446_2111124_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|83aa|up_2|LR134302.1_2111405_2111654_+	NA	NA|190aa|up_1|LR134302.1_2111752_2112322_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|638aa|up_0|LR134302.1_2112725_2114639_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|471aa|down_0|LR134302.1_2114873_2116286_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|240aa|down_1|LR134302.1_2116282_2117002_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|400aa|down_2|LR134302.1_2117115_2118315_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|252aa|down_3|LR134302.1_2118467_2119223_-	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	NA|482aa|down_4|LR134302.1_2119219_2120665_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|533aa|down_5|LR134302.1_2120734_2122333_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|245aa|down_6|LR134302.1_2122340_2123075_-	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|141aa|down_7|LR134302.1_2123277_2123700_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|86aa|down_8|LR134302.1_2123759_2124017_+	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	NA|182aa|down_9|LR134302.1_2124055_2124601_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	7	2255421-2255534	6	CRISPRCasFinder	no		PD-DExK,DEDDh,WYL,csa3,DinG	Orphan	GCCGGCCGCGCCTGAGCCGGCCGCGCC	27	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA|55aa|down_8|LR134302.1_2265304_2265469_-	NA|113aa|up_9|LR134302.1_2244924_2245263_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|473aa|up_8|LR134302.1_2245383_2246802_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|353aa|up_7|LR134302.1_2247133_2248192_-	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|79aa|up_6|LR134302.1_2248333_2248570_-	pfam06945, DUF1289, Protein of unknown function (DUF1289)	NA|296aa|up_5|LR134302.1_2248649_2249537_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|219aa|up_4|LR134302.1_2249558_2250215_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|474aa|up_3|LR134302.1_2250211_2251633_-	PRK12466, PRK12466, 3-isopropylmalate dehydratase large subunit	NA|328aa|up_2|LR134302.1_2251703_2252687_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|308aa|up_1|LR134302.1_2252844_2253768_+	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|86aa|up_0|LR134302.1_2253840_2254098_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|214aa|down_0|LR134302.1_2255562_2256204_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|259aa|down_1|LR134302.1_2256205_2256982_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|321aa|down_2|LR134302.1_2257062_2258025_-	cd10979, CE4_PuuE_like, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases	NA|397aa|down_3|LR134302.1_2258257_2259448_+	cd19979, PBP1_ABC_ligand_binding-like, amino acid amide ABC transporter substrate binding protein haat family	NA|293aa|down_4|LR134302.1_2259475_2260354_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|831aa|down_5|LR134302.1_2260353_2262846_+	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|324aa|down_6|LR134302.1_2262974_2263946_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|440aa|down_7|LR134302.1_2264063_2265383_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|55aa|down_8|LR134302.1_2265304_2265469_-	NA	NA|536aa|down_9|LR134302.1_2265554_2267162_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	9	2775209-2775431	8	CRISPRCasFinder	no	WYL	PD-DExK,DEDDh,WYL,csa3,DinG	Unclear	AGGGTGCGCAGCGTGGGGGCATTTTTTTCCGCCGGGCCGCCCCAAGGAAAAAAGC	55	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA	NA|915aa|up_9|LR134302.1_2764895_2767640_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|269aa|up_8|LR134302.1_2767641_2768448_-	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|386aa|up_7|LR134302.1_2768748_2769906_+	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II	NA|536aa|up_6|LR134302.1_2770009_2771617_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|42aa|up_5|LR134302.1_2771647_2771773_+	pfam09813, Coiled-coil_56, Coiled-coil domain-containing protein 56	NA|75aa|up_4|LR134302.1_2771782_2772007_+	pfam11174, DUF2970, Protein of unknown function (DUF2970)	NA|292aa|up_3|LR134302.1_2772045_2772921_+	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|67aa|up_2|LR134302.1_2773358_2773559_-	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|308aa|up_1|LR134302.1_2773595_2774519_+	cd06662, SURF1, SURF1 superfamily	NA|210aa|up_0|LR134302.1_2774554_2775184_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|348aa|down_0|LR134302.1_2775487_2776531_+	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|298aa|down_1|LR134302.1_2776544_2777438_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|205aa|down_2|LR134302.1_2777455_2778070_+	pfam02630, SCO1-SenC, SCO1/SenC	NA|76aa|down_3|LR134302.1_2778091_2778319_-	pfam12512, DUF3717, Protein of unknown function (DUF3717)	NA|228aa|down_4|LR134302.1_2778462_2779146_+	PRK11280, PRK11280, hypothetical protein; Provisional	NA|270aa|down_5|LR134302.1_2779185_2779995_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|458aa|down_6|LR134302.1_2780061_2781435_+	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|457aa|down_7|LR134302.1_2781434_2782805_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|441aa|down_8|LR134302.1_2782907_2784230_+	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|353aa|down_9|LR134302.1_2784226_2785285_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	10	3176766-3176867	9	CRISPRCasFinder	no		PD-DExK,DEDDh,WYL,csa3,DinG	Orphan	TGGCGCGCTTCACCCATCCTACG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA	NA|357aa|up_9|LR134302.1_3167459_3168530_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|442aa|up_8|LR134302.1_3168526_3169852_+	PRK07627, PRK07627, dihydroorotase; Provisional	NA|247aa|up_7|LR134302.1_3169848_3170589_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|297aa|up_6|LR134302.1_3170632_3171523_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|225aa|up_5|LR134302.1_3171738_3172413_+	PRK06201, PRK06201, hypothetical protein; Validated	NA|406aa|up_4|LR134302.1_3172409_3173627_+	PRK06107, PRK06107, aspartate transaminase	NA|276aa|up_3|LR134302.1_3173709_3174537_+	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|234aa|up_2|LR134302.1_3174565_3175267_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|239aa|up_1|LR134302.1_3175268_3175985_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|242aa|up_0|LR134302.1_3175981_3176707_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|426aa|down_0|LR134302.1_3176966_3178244_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|278aa|down_1|LR134302.1_3178347_3179181_-	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA|393aa|down_2|LR134302.1_3179177_3180356_-	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG	NA|242aa|down_3|LR134302.1_3180447_3181173_-	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|288aa|down_4|LR134302.1_3181178_3182042_-	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|335aa|down_5|LR134302.1_3182038_3183043_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|363aa|down_6|LR134302.1_3183055_3184144_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|593aa|down_7|LR134302.1_3184136_3185915_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|366aa|down_8|LR134302.1_3185976_3187074_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|833aa|down_9|LR134302.1_3187180_3189679_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCA_900636675.1_43781_F01	LR134302	Achromobacter spanius strain NCTC13519 genome assembly, chromosome: 1	11	3483103-3483205	10	CRISPRCasFinder	no		PD-DExK,DEDDh,WYL,csa3,DinG	Orphan	GGGCCTGCCGCGCTGCACCCATCCTAC	27	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,WYL,csa3,DinG	NA,NA	NA|801aa|up_9|LR134302.1_3471220_3473623_+	PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed	NA|178aa|up_8|LR134302.1_3473619_3474153_-	PRK12846, PRK12846, peptide deformylase; Reviewed	NA|132aa|up_7|LR134302.1_3474168_3474564_-	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase	NA|347aa|up_6|LR134302.1_3474639_3475680_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|241aa|up_5|LR134302.1_3475672_3476395_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|180aa|up_4|LR134302.1_3476399_3476939_-	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA|713aa|up_3|LR134302.1_3476935_3479074_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|304aa|up_2|LR134302.1_3479074_3479986_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|256aa|up_1|LR134302.1_3480264_3481032_+	PRK08252, PRK08252, crotonase/enoyl-CoA hydratase family protein	NA|508aa|up_0|LR134302.1_3481358_3482882_+	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]	NA|287aa|down_0|LR134302.1_3484430_3485291_-	PLN02864, PLN02864, enoyl-CoA hydratase	NA|305aa|down_1|LR134302.1_3485298_3486213_-	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs	NA|300aa|down_2|LR134302.1_3486364_3487264_+	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|LR134302.1_3487520_3488516_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|319aa|down_4|LR134302.1_3488583_3489540_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|325aa|down_5|LR134302.1_3489559_3490534_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|507aa|down_6|LR134302.1_3490592_3492113_-	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|391aa|down_7|LR134302.1_3492148_3493321_-	PRK06158, PRK06158, thiolase; Provisional	NA|135aa|down_8|LR134302.1_3493317_3493722_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|397aa|down_9|LR134302.1_3493946_3495137_+	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit
