The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134310	Actinobacillus equuli strain NCTC8529 genome assembly, chromosome: 1	2451991	340403	346962	2451991		Staphylococcus_phage(50.0%)	7	NA	NA
VEE89491.1|340403_341693_+	aminopeptidase B	NA	Q6GYZ8	Mycoplasma_phage	31.8	7.4e-30
VEE89493.1|341820_342756_+	phosphosugar isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	35.8	3.7e-39
VEE89495.1|342765_343254_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
VEE89497.1|343341_343803_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	58.8	3.0e-42
VEE89499.1|343913_345119_-	riboflavin biosynthesis protein ribA	NA	A0A2H4PQS2	Staphylococcus_phage	50.0	2.4e-107
VEE89501.1|345181_345829_-	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	43.3	4.1e-45
VEE89504.1|345876_346962_-	riboflavin biosynthesis protein	NA	A0A1V0SE20	Indivirus	35.8	3.9e-48
>prophage 2
LR134310	Actinobacillus equuli strain NCTC8529 genome assembly, chromosome: 1	2451991	1978395	1987898	2451991		Stx_converting_phage(33.33%)	8	NA	NA
VEE92444.1|1978395_1979769_-	sensor protein QseC	NA	W8CYF6	Bacillus_phage	27.7	1.2e-14
VEE92446.1|1979761_1980427_-	transcriptional regulatory protein	NA	Q6XM27	Feldmannia_irregularis_virus	27.3	8.5e-06
VEE92448.1|1980622_1980982_-	Uncharacterized conserved protein	NA	A0A1I9LJU6	Stx_converting_phage	38.7	5.1e-13
VEE92450.1|1981041_1981410_-	Uncharacterized conserved protein	NA	A0A1I9LJU6	Stx_converting_phage	43.0	1.6e-14
VEE92452.1|1981446_1981830_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEE92454.1|1982076_1983342_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	51.4	2.1e-98
VEE92456.1|1983573_1984461_-	inorganic polyphosphate/ATP-NAD kinase	NA	NA	NA	NA	NA
VEE92458.1|1984550_1987898_-	helicase	NA	A0A2D0YI93	Vibrio_phage	28.4	2.2e-73
>prophage 3
LR134310	Actinobacillus equuli strain NCTC8529 genome assembly, chromosome: 1	2451991	2126142	2136661	2451991		Salmonella_phage(16.67%)	10	NA	NA
VEE92712.1|2126142_2127285_+	bicyclomycin/multidrug efflux system protein	NA	S4TR35	Salmonella_phage	23.9	2.0e-18
VEE92714.1|2127332_2127719_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92716.1|2127793_2128363_-	component of anaerobic dehydrogenase	NA	NA	NA	NA	NA
VEE92718.1|2128420_2129263_+	endonuclease IV	NA	L7RDB2	Acanthamoeba_polyphaga_moumouvirus	33.3	7.4e-31
VEE92720.1|2129393_2129987_+	lipoprotein	NA	A0A068EMN7	Bacillus_phage	38.1	9.9e-14
VEE92722.1|2130026_2130482_-	SOS-response transcriptional repressor	NA	NA	NA	NA	NA
VEE92724.1|2130716_2131103_-	autonomous glycyl radical cofactor GrcA	NA	D9ICE0	Escherichia_virus	59.1	3.1e-32
VEE92726.1|2131307_2131979_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.2	3.6e-52
VEE92728.1|2132166_2132565_-	carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
VEE92730.1|2132761_2136661_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	26.6	3.2e-52
>prophage 4
LR134310	Actinobacillus equuli strain NCTC8529 genome assembly, chromosome: 1	2451991	2212492	2288840	2451991	integrase,tail,protease,head,transposase,portal	Mannheimia_phage(52.63%)	94	2201204:2201220	2248691:2248707
2201204:2201220	attL	AATCCGACCGCTTGAGG	NA	NA	NA	NA
VEE92885.1|2212492_2213959_+|protease	metalloprotease	protease	Q8SBN9	Clostridium_phage	28.7	2.8e-17
VEE92888.1|2213977_2214664_+	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
VEE92890.1|2214756_2216472_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.4	2.6e-70
VEE92892.1|2216598_2217447_+	lipoprotein	NA	NA	NA	NA	NA
VEE92894.1|2217541_2218360_+	HAD superfamily hydrolase	NA	NA	NA	NA	NA
VEE92896.1|2218359_2220075_+	nitrate/nitrite sensor protein NarQ	NA	NA	NA	NA	NA
VEE92898.1|2220102_2220621_+	sortase and related acyltransferase	NA	NA	NA	NA	NA
VEE92900.1|2220660_2221257_+	putative deoxyribonucleotide triphosphate pyrophosphatase	NA	Q66YC8	Euphorbia_ringspot_virus	26.6	1.3e-08
VEE92902.1|2221284_2221605_+	Domain of uncharacterised function (DUF74)	NA	NA	NA	NA	NA
VEE92904.1|2221710_2223381_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
VEE92906.1|2223481_2223928_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEE92908.1|2224018_2224768_+	NADP-dependent dehydrogenase	NA	NA	NA	NA	NA
VEE92910.1|2224896_2226087_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
VEE92912.1|2226088_2226901_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
VEE92914.1|2227033_2227246_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92916.1|2227442_2229365_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	30.6	2.4e-93
VEE92918.1|2229430_2229790_+	putative effector of murein hydrolase LrgA	NA	NA	NA	NA	NA
VEE92920.1|2229804_2230491_+	putative effector of murein hydrolase	NA	NA	NA	NA	NA
VEE92922.1|2230553_2232299_+	lipid transporter ATP-binding/permease	NA	W8CYL7	Bacillus_phage	30.5	1.1e-55
VEE92924.1|2232433_2233066_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
VEE92926.1|2233065_2233911_+	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
VEE92928.1|2233942_2234893_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	38.8	1.1e-43
VEE92930.1|2234964_2235975_+	dihydroorotate dehydrogenase 2	NA	NA	NA	NA	NA
VEE92932.1|2236333_2238988_+	pyruvate dehydrogenase subunit E1	NA	NA	NA	NA	NA
VEE92934.1|2239115_2241005_+	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
VEE92936.1|2241120_2242545_+	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.7	8.4e-43
VEE92938.1|2243137_2244346_+|integrase	Prophage CP4-57 integrase	integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	33.0	7.4e-48
VEE92940.1|2244380_2244596_-	prophage CP4-57 regulatory protein	NA	NA	NA	NA	NA
VEE92942.1|2244592_2245000_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92944.1|2245005_2245200_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92946.1|2245248_2245644_-	Phosphoribosyl-ATP pyrophosphohydrolase	NA	S5M9Z4	Pseudoalteromonas_phage	54.8	4.7e-28
VEE92948.1|2245654_2245918_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92950.1|2245928_2246375_-	single-strand binding protein	NA	A0A2I7RK19	Vibrio_phage	62.5	7.7e-35
VEE92952.1|2246362_2246560_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92954.1|2246576_2248826_-	Bacteriophage replication gene A protein (GPA)	NA	Q94N00	Haemophilus_virus	50.0	6.4e-170
2248691:2248707	attR	CCTCAAGCGGTCGGATT	NA	NA	NA	NA
VEE92956.1|2248822_2249002_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92958.1|2248979_2249120_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92960.1|2249116_2249572_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92962.1|2249574_2249904_-	Uncharacterised protein	NA	Q19UT2	Mannheimia_phage	57.1	4.6e-21
VEE92964.1|2250342_2250555_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	Q19UN8	Mannheimia_phage	68.9	7.6e-17
VEE92965.1|2250669_2251359_+	putative phage repressor	NA	A0A0M3LPF9	Mannheimia_phage	64.6	1.9e-77
VEE92966.1|2251388_2251571_+	Uncharacterised protein	NA	A0A0R6PIB1	Moraxella_phage	58.3	7.0e-11
VEE92967.1|2251903_2252749_-	Site-specific DNA methylase	NA	F6MIM2	Haemophilus_phage	66.2	2.9e-107
VEE92968.1|2253065_2253329_-	Uncharacterised protein	NA	A0A0M3LNN9	Mannheimia_phage	74.1	4.7e-32
VEE92969.1|2253318_2253954_-	Uncharacterised protein	NA	Q7Y5S1	Haemophilus_phage	36.1	2.1e-33
VEE92970.1|2253953_2255387_-|tail	Phage tail fibre repeat	tail	F6MIL8	Haemophilus_phage	30.3	1.0e-43
VEE92971.1|2255403_2255988_-	Uncharacterized protein conserved in bacteria (DUF2313)	NA	F6MIL7	Haemophilus_phage	82.4	6.0e-88
VEE92972.1|2255987_2257049_-	Uncharacterized homolog of phage Mu protein gp47	NA	F6MIL6	Haemophilus_phage	77.9	3.7e-152
VEE92973.1|2257051_2257402_-	Phage protein GP46	NA	A0A0M3LQK5	Mannheimia_phage	86.2	6.0e-51
VEE92974.1|2257500_2258163_-	Mu-like prophage protein gp45	NA	A0A0M3LPA3	Mannheimia_phage	73.1	2.3e-83
VEE92975.1|2258159_2259323_-|tail	Mu-like prophage tail protein gpP	tail	A0A0M3LPS4	Mannheimia_phage	92.7	1.5e-199
VEE92976.1|2259326_2260685_-	Mu-like prophage DNA circulation protein	NA	F6MIL2	Haemophilus_phage	59.3	1.6e-152
VEE92977.1|2260684_2262868_-|tail	Phage-related minor tail protein	tail	A0A0M3LPB6	Mannheimia_phage	41.1	2.4e-105
VEE92978.1|2262921_2263092_-	Uncharacterised protein	NA	A0A0M3LSQ8	Mannheimia_phage	81.5	2.7e-17
VEE92979.1|2263145_2263514_-	Uncharacterised protein	NA	A0A0M3LSI2	Mannheimia_phage	74.6	6.7e-45
VEE92980.1|2263513_2263888_-	Uncharacterised protein	NA	A0A0M3LRV6	Mannheimia_phage	77.4	1.3e-51
VEE92981.1|2263897_2265310_-|tail	Mu-like prophage tail sheath protein gpL	tail	A0A0M3LQC3	Mannheimia_phage	90.9	2.3e-234
VEE92982.1|2265309_2265489_-	Uncharacterised protein	NA	A0A0M3LQM9	Mannheimia_phage	89.8	6.0e-23
VEE92983.1|2265489_2266131_-	Mu-like prophage protein gp37	NA	A0A0M3LQJ7	Mannheimia_phage	88.7	2.5e-103
VEE92984.1|2266127_2266553_-	Mu-like prophage protein gp36	NA	A0A0M3LP98	Mannheimia_phage	80.9	3.6e-58
VEE92985.1|2266552_2266927_-	Uncharacterised protein	NA	A0A0M3LPR6	Mannheimia_phage	76.6	9.6e-23
VEE92986.1|2266971_2267889_-|head	Mu-like prophage major head subunit gpT	head	A0A0A1IWZ9	Pseudomonas_phage	40.1	4.7e-55
VEE92987.1|2267888_2268965_-	Mu-like prophage I protein	NA	B7SDN9	Haemophilus_phage	74.3	5.4e-143
VEE92988.1|2269233_2269650_-	Mu-like prophage protein gpG	NA	A0A0M3LSP9	Mannheimia_phage	84.7	2.6e-61
VEE92989.1|2269797_2271087_-|head	phage head morphogenesis protein, SPP1 gp7 family	head	B7SDN5	Haemophilus_phage	82.1	1.0e-212
VEE92990.1|2271073_2272714_-	Mu-like prophage protein gp29	NA	A0A0M3LRU4	Mannheimia_phage	87.2	1.4e-280
VEE92991.1|2272773_2274399_-	phage uncharacterized protein, C-terminal domain	NA	A0A0M3LQB7	Mannheimia_phage	92.2	7.3e-301
VEE92992.1|2274402_2274555_-	Uncharacterised protein	NA	A0A0M3LQM0	Mannheimia_phage	73.9	5.6e-14
VEE92993.1|2274554_2275055_-	Protein of uncharacterised function (DUF1804)	NA	A0A0M3LQI8	Mannheimia_phage	92.2	3.1e-77
VEE92994.1|2275064_2275319_-	Uncharacterised protein	NA	A0A0M3LP87	Mannheimia_phage	65.5	3.6e-21
VEE92995.1|2275318_2275576_-	Uncharacterised protein	NA	A0A0M3LPQ4	Mannheimia_phage	80.5	8.4e-10
VEE92996.1|2275568_2275742_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE92997.1|2275738_2276128_-	Protein of uncharacterised function (DUF2681)	NA	A0A0M3LP93	Mannheimia_phage	45.0	6.9e-16
VEE92998.1|2276127_2276349_-	Protein of uncharacterised function (DUF2644)	NA	F6MIK0	Haemophilus_phage	88.6	4.9e-27
VEE92999.1|2276351_2276897_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	69.8	2.6e-69
VEE93000.1|2276983_2277409_-	Uncharacterized conserved protein	NA	A0A0M3LRS6	Mannheimia_phage	47.5	6.8e-33
VEE93001.1|2277694_2277925_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93002.1|2278146_2278578_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93003.1|2278668_2279100_-	Mu-like prophage protein gp16	NA	F6MIJ6	Haemophilus_phage	66.0	1.6e-45
VEE93004.1|2279083_2279650_-	Uncharacterised protein	NA	A0A0M3LPP6	Mannheimia_phage	71.8	7.6e-72
VEE93005.1|2279636_2279843_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93006.1|2279854_2280109_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93007.1|2280119_2280332_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93008.1|2280412_2280934_-	Mu-like prophage host-nuclease inhibitor protein Gam	NA	F6MIJ0	Haemophilus_phage	58.1	3.4e-50
VEE93009.1|2280943_2281162_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93010.1|2281133_2281232_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93011.1|2281252_2281564_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93012.1|2281560_2281758_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE93013.1|2281767_2282649_-	Helix-turn-helix	NA	A0A0M3LP72	Mannheimia_phage	67.9	2.3e-107
VEE93014.1|2282658_2284629_-|transposase	phage transposase	transposase	A0A0M3LPN5	Mannheimia_phage	58.5	5.9e-212
VEE93015.1|2284673_2284952_-	putative transcriptional regulator, Nlp	NA	F6MII4	Haemophilus_phage	61.2	2.0e-17
VEE93016.1|2285128_2285848_+	putative phage repressor	NA	F6MII3	Haemophilus_phage	60.7	5.5e-67
VEE93017.1|2286107_2287793_+	Uncharacterized conserved protein	NA	A0A0M3LRV4	Mannheimia_phage	65.0	1.1e-206
VEE93018.1|2287805_2288840_+|portal	phage portal protein, PBSX family	portal	Q19UT6	Mannheimia_phage	61.7	1.7e-117
