assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900637045.1_46837_C02	LR134342	Pseudomonas aeruginosa strain NCTC10728 genome assembly, chromosome: 1	1	863733-864372	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	Type I-E	CGGTTCATCCCCACGCATGTGGGGAACAC,CGGTTCATCCCCACGCATGTGGGGAACAC,CGGTTCATCCCCACGCATGTGGGGAACAC	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	10,10,10	10	TypeI-E	RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	NA|415aa|up_1|LR134342.1_860973_862218_-,NA	NA|527aa|up_9|LR134342.1_849356_850937_+	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase	NA|335aa|up_8|LR134342.1_851040_852045_-	COG2055, COG2055, Malate/L-lactate dehydrogenases [Energy production and conversion]	NA|542aa|up_7|LR134342.1_852283_853909_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|132aa|up_6|LR134342.1_853921_854317_-	pfam02974, Inh, Protease inhibitor Inh	NA|480aa|up_5|LR134342.1_854563_856003_-	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal	NA|482aa|up_4|LR134342.1_856361_857807_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|433aa|up_3|LR134342.1_857810_859109_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|594aa|up_2|LR134342.1_859105_860887_-	TIGR01842, Proteases_secretion_ATP-binding_protein_PrtD, type I secretion system ABC transporter, PrtD family	NA|415aa|up_1|LR134342.1_860973_862218_-	NA	NA|105aa|up_0|LR134342.1_863259_863574_+	pfam18226, QslA_E, LasR-specific antiactivator QslA chain E	cas2|100aa|down_0|LR134342.1_864436_864736_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|291aa|down_1|LR134342.1_864732_865605_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|204aa|down_2|LR134342.1_865649_866261_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|221aa|down_3|LR134342.1_866235_866898_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|381aa|down_4|LR134342.1_866899_868042_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|177aa|down_5|LR134342.1_868051_868582_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|523aa|down_6|LR134342.1_868578_870147_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|891aa|down_7|LR134342.1_870149_872822_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|859aa|down_8|LR134342.1_874447_877024_+	PRK13557, PRK13557, histidine kinase; Provisional	NA|591aa|down_9|LR134342.1_877046_878819_-	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families
GCA_900637045.1_46837_C02	LR134342	Pseudomonas aeruginosa strain NCTC10728 genome assembly, chromosome: 1	2	873545-874187	2,2,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	Type I-E	CGGTTCATCCCCACACCCGTGGGGAACNC,CGGTTCATCCCCACACCCGTGGGGAACGC,CGGTTCATCCCCACACCCGTGGGGAACAC	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	10,9,8	10	TypeI-E	RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	NA|415aa|up_9|LR134342.1_860973_862218_-,NA	NA|415aa|up_9|LR134342.1_860973_862218_-	NA	NA|105aa|up_8|LR134342.1_863259_863574_+	pfam18226, QslA_E, LasR-specific antiactivator QslA chain E	cas2|100aa|up_7|LR134342.1_864436_864736_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|291aa|up_6|LR134342.1_864732_865605_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|204aa|up_5|LR134342.1_865649_866261_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|221aa|up_4|LR134342.1_866235_866898_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|381aa|up_3|LR134342.1_866899_868042_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|177aa|up_2|LR134342.1_868051_868582_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|523aa|up_1|LR134342.1_868578_870147_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|891aa|up_0|LR134342.1_870149_872822_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|859aa|down_0|LR134342.1_874447_877024_+	PRK13557, PRK13557, histidine kinase; Provisional	NA|591aa|down_1|LR134342.1_877046_878819_-	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	NA|187aa|down_2|LR134342.1_878898_879459_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|266aa|down_3|LR134342.1_879623_880421_+	PRK06563, PRK06563, crotonase/enoyl-CoA hydratase family protein	NA|295aa|down_4|LR134342.1_880477_881362_+	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only]	NA|483aa|down_5|LR134342.1_881744_883193_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|384aa|down_6|LR134342.1_883189_884341_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|504aa|down_7|LR134342.1_884330_885842_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|261aa|down_8|LR134342.1_885844_886627_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|168aa|down_9|LR134342.1_886818_887322_+	pfam14595, Thioredoxin_9, Thioredoxin
GCA_900637045.1_46837_C02	LR134342	Pseudomonas aeruginosa strain NCTC10728 genome assembly, chromosome: 1	3	3321045-3321158	3	CRISPRCasFinder	no		RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	Orphan	GGCCAAAGAACTGGAGGGCAAGGTATGA	28	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	NA,NA|168aa|down_2|LR134342.1_3325730_3326234_-,NA|251aa|down_5|LR134342.1_3327987_3328740_-,NA|185aa|down_7|LR134342.1_3329508_3330063_-,NA|30aa|down_8|LR134342.1_3330125_3330215_+	NA|293aa|up_9|LR134342.1_3307891_3308770_-	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase	NA|222aa|up_8|LR134342.1_3308932_3309598_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|354aa|up_7|LR134342.1_3309660_3310722_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|459aa|up_6|LR134342.1_3310977_3312354_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|251aa|up_5|LR134342.1_3312632_3313385_+	pfam07722, Peptidase_C26, Peptidase C26	NA|453aa|up_4|LR134342.1_3313425_3314784_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|457aa|up_3|LR134342.1_3314849_3316220_+	PRK07480, PRK07480, putative aminotransferase; Validated	NA|368aa|up_2|LR134342.1_3316335_3317439_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|366aa|up_1|LR134342.1_3317857_3318955_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|385aa|up_0|LR134342.1_3319009_3320164_+	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|796aa|down_0|LR134342.1_3322201_3324589_-	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only]	NA|351aa|down_1|LR134342.1_3324699_3325752_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|168aa|down_2|LR134342.1_3325730_3326234_-	NA	NA|192aa|down_3|LR134342.1_3326338_3326914_-	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs	NA|314aa|down_4|LR134342.1_3327026_3327968_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|251aa|down_5|LR134342.1_3327987_3328740_-	NA	NA|210aa|down_6|LR134342.1_3328857_3329487_+	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	NA|185aa|down_7|LR134342.1_3329508_3330063_-	NA	NA|30aa|down_8|LR134342.1_3330125_3330215_+	NA	NA|165aa|down_9|LR134342.1_3330328_3330823_+	COG1683, COG1683, Uncharacterized conserved protein [Function unknown]
GCA_900637045.1_46837_C02	LR134342	Pseudomonas aeruginosa strain NCTC10728 genome assembly, chromosome: 1	4	4845085-4845186	4	CRISPRCasFinder	no	DEDDh	RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	Unclear	GCGGCGGGTATCGGCGGATAACGCC	25	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	NA|454aa|up_7|LR134342.1_4837226_4838588_-,NA|106aa|down_6|LR134342.1_4851430_4851748_+	NA|286aa|up_9|LR134342.1_4835421_4836279_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|268aa|up_8|LR134342.1_4836419_4837223_-	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane]	NA|454aa|up_7|LR134342.1_4837226_4838588_-	NA	NA|74aa|up_6|LR134342.1_4838730_4838952_-	COG3205, COG3205, Predicted membrane protein [Function unknown]	NA|286aa|up_5|LR134342.1_4839245_4840103_+	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|104aa|up_4|LR134342.1_4840320_4840632_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|552aa|up_3|LR134342.1_4840628_4842284_+	PRK09395, actP, cation/acetate symporter ActP	NA|600aa|up_2|LR134342.1_4842373_4844173_+	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	DEDDh|209aa|up_1|LR134342.1_4844169_4844796_+	PRK09145, PRK09145, 3'-5' exonuclease	NA|53aa|up_0|LR134342.1_4844904_4845063_+	pfam11752, DUF3309, Protein of unknown function (DUF3309)	NA|375aa|down_0|LR134342.1_4845322_4846447_+	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown]	NA|89aa|down_1|LR134342.1_4846479_4846746_-	pfam10976, DUF2790, Protein of unknown function (DUF2790)	NA|611aa|down_2|LR134342.1_4847027_4848860_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|188aa|down_3|LR134342.1_4848922_4849486_-	PRK10903, PRK10903, peptidylprolyl isomerase A	NA|276aa|down_4|LR134342.1_4849467_4850295_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|310aa|down_5|LR134342.1_4850301_4851231_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|106aa|down_6|LR134342.1_4851430_4851748_+	NA	NA|214aa|down_7|LR134342.1_4851894_4852536_+	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|300aa|down_8|LR134342.1_4852639_4853539_-	pfam00892, EamA, EamA-like transporter family	NA|112aa|down_9|LR134342.1_4853548_4853884_-	PRK10089, PRK10089, chaperone CsaA
GCA_900637045.1_46837_C02	LR134342	Pseudomonas aeruginosa strain NCTC10728 genome assembly, chromosome: 1	5	5753392-5753502	5	CRISPRCasFinder	no		RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	Orphan	AATAAAGGGGACAGATTTATTTTCCCTACTCTAAT	35	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	NA|175aa|up_2|LR134342.1_5731578_5732103_+,NA|306aa|down_6|LR134342.1_5761950_5762868_+	NA|233aa|up_9|LR134342.1_5723246_5723945_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|354aa|up_8|LR134342.1_5723957_5725019_-	COG3435, COG3435, Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|305aa|up_7|LR134342.1_5725143_5726058_+	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|173aa|up_6|LR134342.1_5726146_5726665_+	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional	NA|333aa|up_5|LR134342.1_5726661_5727660_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|821aa|up_4|LR134342.1_5727803_5730266_+	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|383aa|up_3|LR134342.1_5730383_5731532_+	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown]	NA|175aa|up_2|LR134342.1_5731578_5732103_+	NA	NA|566aa|up_1|LR134342.1_5732415_5734113_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|5645aa|up_0|LR134342.1_5734225_5751160_+	sd00046, FHA_bHelix, beta-helical repeat found in filamentous hemagglutinin and related adhesins and CdiA family proteins	NA|932aa|down_0|LR134342.1_5753905_5756701_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|170aa|down_1|LR134342.1_5756715_5757225_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|176aa|down_2|LR134342.1_5758359_5758887_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|294aa|down_3|LR134342.1_5758883_5759765_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|74aa|down_4|LR134342.1_5759789_5760011_-	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|527aa|down_5|LR134342.1_5760167_5761748_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|306aa|down_6|LR134342.1_5761950_5762868_+	NA	NA|512aa|down_7|LR134342.1_5762949_5764485_+	COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]	NA|581aa|down_8|LR134342.1_5764492_5766235_-	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|308aa|down_9|LR134342.1_5766357_5767281_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain
