The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134348	Bifidobacterium breve strain NCTC11815 genome assembly, chromosome: 1	2275664	432675	490838	2275664	transposase,integrase,tRNA	Staphylococcus_phage(42.86%)	47	486308:486325	497567:497584
VEG21086.1|432675_433452_+|tRNA	tRNA nucleotidyltransferase	tRNA	NA	NA	NA	NA
VEG21087.1|433573_434347_+	Ham1 family protein	NA	NA	NA	NA	NA
VEG21088.1|434472_435474_-	transporter, auxin efflux carrier domain protein	NA	NA	NA	NA	NA
VEG21089.1|436348_438049_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
VEG21090.1|438561_439980_-	nitrate/sulfonate/bicarbonate family ABC transporter ATPase	NA	G3M9Y6	Bacillus_virus	37.8	4.2e-34
VEG21091.1|440101_441892_-	ABC transporter permease	NA	NA	NA	NA	NA
VEG21092.1|442806_443256_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
VEG21093.1|443424_444348_+	signal peptidase I	NA	NA	NA	NA	NA
VEG21094.1|444375_445233_+	ribonuclease HII	NA	NA	NA	NA	NA
VEG21095.1|445394_446510_+	LacI-type transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	30.8	1.2e-28
VEG21096.1|446670_446817_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG21097.1|447062_448886_-	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	26.1	4.7e-46
VEG21098.1|449233_449500_+	transport protein	NA	NA	NA	NA	NA
VEG21099.1|449533_449737_+	transport protein	NA	NA	NA	NA	NA
VEG21100.1|450509_450659_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG21101.1|450619_454681_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.7	1.2e-17
VEG21102.1|456012_457362_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEG21103.1|457597_458545_+	ABC transporter permease	NA	NA	NA	NA	NA
VEG21104.1|458597_459596_+	ABC transporter permease	NA	NA	NA	NA	NA
VEG21105.1|459763_461896_+	beta-galactosidase	NA	NA	NA	NA	NA
VEG21106.1|461938_462994_+	bacterial regulatory protein, LacI family	NA	NA	NA	NA	NA
VEG21107.1|463053_463602_+	2,5-diketo-D-gluconic acid reductase A	NA	NA	NA	NA	NA
VEG21108.1|463601_464360_+	protein	NA	NA	NA	NA	NA
VEG21109.1|464780_466106_+	manganese transport protein	NA	NA	NA	NA	NA
VEG21110.1|466146_467745_-	putative permease	NA	NA	NA	NA	NA
VEG21111.1|468046_469888_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
VEG21112.1|470006_471758_-	undecaprenyl-phosphate sugar phosphotransferase	NA	NA	NA	NA	NA
VEG21113.1|471979_472585_+	putative low molecular weight protein-tyrosine-phosphatase	NA	NA	NA	NA	NA
VEG21114.1|472700_474074_+	protein	NA	NA	NA	NA	NA
VEG21115.1|474015_474171_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG21116.1|474192_475299_-|integrase	integrase, catalytic region	integrase	W5R8L2	Staphylococcus_phage	33.6	3.7e-38
VEG21117.1|475519_476650_+	glycosyltransferase, group 1 family protein	NA	NA	NA	NA	NA
VEG21118.1|476685_477753_+	glycosyltransferase, group 1 family protein	NA	NA	NA	NA	NA
VEG21119.1|477761_479006_+	oligosaccharide repeat unit polymerase Wzy	NA	NA	NA	NA	NA
VEG21120.1|479002_480148_+	polysaccharide pyruvyl transferase	NA	NA	NA	NA	NA
VEG21121.1|480163_481624_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
VEG21122.1|481633_482635_+	glycosyltransferase, group 2 family protein	NA	NA	NA	NA	NA
VEG21123.1|482681_484472_+	putative 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase	NA	NA	NA	NA	NA
VEG21124.1|484728_485208_-|transposase	transposase, mutator type	transposase	A0A0N9STL0	Staphylococcus_phage	33.6	3.7e-11
VEG21125.1|485776_485995_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG21126.1|485997_486210_-	M22 peptidase	NA	NA	NA	NA	NA
486308:486325	attL	AACCATTATCAACGTCAA	NA	NA	NA	NA
VEG21127.1|486390_486534_+|integrase	integrase, catalytic domain protein	integrase	NA	NA	NA	NA
VEG21128.1|486588_487260_+|transposase	transposase	transposase	NA	NA	NA	NA
VEG21129.1|487580_488366_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG21130.1|488362_488944_+	protein	NA	NA	NA	NA	NA
VEG21131.1|489595_490030_-|transposase	mutator type transposase	transposase	NA	NA	NA	NA
VEG21132.1|490130_490838_-|transposase	mutator type transposase	transposase	A0A0N9STL0	Staphylococcus_phage	35.7	5.0e-20
497567:497584	attR	AACCATTATCAACGTCAA	NA	NA	NA	NA
>prophage 2
LR134348	Bifidobacterium breve strain NCTC11815 genome assembly, chromosome: 1	2275664	1257081	1300570	2275664	transposase,protease,tRNA	Paenibacillus_phage(33.33%)	40	NA	NA
VEG21807.1|1257081_1258125_-|protease	putative glycoprotease GCP	protease	A0A0R6PI74	Moraxella_phage	39.3	7.8e-54
VEG21808.1|1258121_1258721_-	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA	NA
VEG21809.1|1258735_1259617_-|protease	metal-dependent proteases-like protein	protease	NA	NA	NA	NA
VEG21810.1|1259673_1260240_-	hydrolase, P-loop family	NA	NA	NA	NA	NA
VEG21811.1|1260248_1261220_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
VEG21812.1|1261298_1263005_-	competence protein	NA	NA	NA	NA	NA
VEG21813.1|1263001_1263427_-	comea	NA	NA	NA	NA	NA
VEG21814.1|1263854_1266818_-|tRNA	leucyl-tRNA synthetase LeuS	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.3	1.1e-198
VEG21815.1|1266860_1267742_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEG21816.1|1267754_1268705_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
VEG21817.1|1268884_1269730_-	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
VEG21818.1|1269798_1271070_+	sam-dependent methyltransferase	NA	NA	NA	NA	NA
VEG21819.1|1271151_1271556_-	putative flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
VEG21820.1|1271790_1272726_+	EamA-like transporter family protein	NA	NA	NA	NA	NA
VEG21821.1|1272800_1273499_+	nitroreductase	NA	NA	NA	NA	NA
VEG21822.1|1273670_1274870_+	protein	NA	NA	NA	NA	NA
VEG21823.1|1274866_1275052_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG21824.1|1275345_1276644_+	protein	NA	NA	NA	NA	NA
VEG21825.1|1276710_1277946_+	N-acylglucosamine 2-epimerase	NA	NA	NA	NA	NA
VEG21826.1|1277991_1278702_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	42.6	2.3e-41
VEG21827.1|1278727_1279375_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
VEG21828.1|1279710_1280796_-	bacterial regulatory protein, LacI family	NA	NA	NA	NA	NA
VEG21829.1|1280973_1282251_-	protein	NA	NA	NA	NA	NA
VEG21830.1|1282266_1283094_-	ABC transporter permease	NA	NA	NA	NA	NA
VEG21831.1|1283083_1284073_-	ABC transporter permease	NA	NA	NA	NA	NA
VEG21832.1|1284072_1285296_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEG21833.1|1285727_1288877_-	glycoside hydrolase family protein	NA	NA	NA	NA	NA
VEG21834.1|1289007_1292127_-	glycosyl hydrolase family 38, N-terminal domain protein	NA	NA	NA	NA	NA
VEG21835.1|1292287_1292776_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
VEG21836.1|1292938_1293553_-	protein	NA	A0A292GAU5	Xanthomonas_phage	37.2	1.2e-25
VEG21837.1|1293696_1294125_-	protein	NA	NA	NA	NA	NA
VEG21838.1|1294220_1294514_+|transposase	transposase IS3/IS911 family protein	transposase	A0A0C5AJ30	Paenibacillus_phage	42.4	3.9e-11
VEG21839.1|1294896_1295343_+	Integrase, catalytic region	NA	NA	NA	NA	NA
VEG21840.1|1295710_1297279_+	transporter, major facilitator family protein	NA	NA	NA	NA	NA
VEG21841.1|1297294_1297588_+	KR domain-containing protein	NA	NA	NA	NA	NA
VEG21842.1|1297708_1297999_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG21843.1|1298252_1298888_+	tetR family transcriptional regulator	NA	NA	NA	NA	NA
VEG21844.1|1298836_1299385_-	phosphopantetheinyl transferase	NA	NA	NA	NA	NA
VEG21845.1|1299447_1299894_-	Integrase, catalytic region	NA	NA	NA	NA	NA
VEG21846.1|1300276_1300570_-|transposase	transposase IS3/IS911 family protein	transposase	A0A0C5AJ30	Paenibacillus_phage	41.3	1.1e-10
>prophage 3
LR134348	Bifidobacterium breve strain NCTC11815 genome assembly, chromosome: 1	2275664	1482333	1494345	2275664	head,portal,capsid	Propionibacterium_phage(33.33%)	15	NA	NA
VEG22010.1|1482333_1485195_-	phage tale measure protein	NA	K4JW62	Streptococcus_phage	57.7	4.6e-56
VEG22011.1|1485229_1485556_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22012.1|1485552_1485975_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22013.1|1486075_1486351_-	Bacterial Ig-like domain (group 2)	NA	NA	NA	NA	NA
VEG22014.1|1486347_1486947_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22015.1|1486960_1487392_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22016.1|1487391_1487679_-	Uncharacterised protein	NA	A0A1P8VV83	Rathayibacter_phage	48.9	6.0e-17
VEG22017.1|1487683_1488082_-	Uncharacterised protein	NA	A6N202	Microbacterium_phage	39.6	3.1e-11
VEG22018.1|1488078_1488597_-	Uncharacterised protein	NA	A0A1D8ETD3	Propionibacterium_phage	31.1	6.9e-11
VEG22019.1|1488611_1488959_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22020.1|1488967_1490170_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A1D8ETI2	Propionibacterium_phage	52.7	1.4e-112
VEG22021.1|1490184_1490931_-|head	Phage Prohead Protease	head	A0A0E3XB56	Gordonia_phage	38.5	3.1e-28
VEG22022.1|1490927_1492334_-|portal	phage portal protein, HK97 family	portal	A0A222ZFM5	Arthrobacter_phage	34.5	6.1e-46
VEG22023.1|1492355_1493969_-	phage Terminase	NA	A0A1D8ETA8	Propionibacterium_phage	52.1	6.6e-137
VEG22024.1|1493982_1494345_-	Uncharacterised protein	NA	A6N1Z4	Microbacterium_phage	40.5	2.9e-08
>prophage 4
LR134348	Bifidobacterium breve strain NCTC11815 genome assembly, chromosome: 1	2275664	1497885	1505712	2275664		Lactococcus_phage(16.67%)	16	NA	NA
VEG22034.1|1497885_1498344_-	phage N-6-adenine-methyltransferase	NA	A0A126HBP0	Lactococcus_phage	51.6	2.7e-35
VEG22035.1|1498375_1498552_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22036.1|1498548_1498878_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22037.1|1498874_1499156_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22038.1|1499152_1499350_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22039.1|1499346_1499850_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22040.1|1499852_1500245_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22041.1|1500374_1500875_-	Single-strand DNA-binding protein	NA	A6N1Y1	Microbacterium_phage	63.0	1.2e-41
VEG22042.1|1500874_1501045_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22043.1|1501044_1501890_-	P33	NA	Q858E1	Salmonella_phage	48.3	7.9e-49
VEG22044.1|1501892_1502855_-	putative phage-type endonuclease	NA	I4AZN3	Saccharomonospora_phage	27.8	1.3e-23
VEG22045.1|1502851_1503010_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22046.1|1503006_1503654_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG22047.1|1503825_1504047_-	Helix-turn-helix domain	NA	NA	NA	NA	NA
VEG22048.1|1504039_1504819_-	phage antirepressor protein	NA	I3NLD0	Bifidobacterium_phage	73.6	9.4e-105
VEG22049.1|1504815_1505712_-	DNA-cytosine methyltransferase	NA	A0A2I7RFJ9	Vibrio_phage	35.0	1.1e-29
