assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900637275.1_50465_C02	LR134362	[Pasteurella] aerogenes strain NCTC13378 genome assembly, chromosome: 1	1	165730-170258	1,1	CRISPRCasFinder,CRT	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,cas3	cas3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,DEDDh,RT,DinG,csa3,cas9	Type III-C,Type III-A,Type III-D,Type III-B	GTCGAAAGACACAGCCCTGTCTAAAAGGGATTAAGAC,GTCGAAAGACACAGCCCTGTCTAAAAGGGATTAAGAC	37,37	2	2	168119-168150|169331-169363	LR134362.1_792448-792479|LR134362.1_833557-833589	NA:NA	63,63	63	TypeIII-C,TypeIII-A,TypeIII-D,TypeIII-B	cas3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,DEDDh,RT,DinG,csa3,cas9	NA|117aa|up_6|LR134362.1_161854_162205_+,NA|282aa|up_4|LR134362.1_162800_163646_+,NA|49aa|up_3|LR134362.1_163657_163804_+,NA	csx16|97aa|up_9|LR134362.1_159160_159451_+	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csx1|381aa|up_8|LR134362.1_159460_160603_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx1|378aa|up_7|LR134362.1_160602_161736_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|117aa|up_6|LR134362.1_161854_162205_+	NA	NA|144aa|up_5|LR134362.1_162293_162725_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|282aa|up_4|LR134362.1_162800_163646_+	NA	NA|49aa|up_3|LR134362.1_163657_163804_+	NA	cas2|95aa|up_2|LR134362.1_163761_164046_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|358aa|up_1|LR134362.1_164056_165130_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|95aa|up_0|LR134362.1_165270_165555_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|208aa|down_0|LR134362.1_170421_171045_+	PRK00300, gmk, guanylate kinase; Provisional	NA|89aa|down_1|LR134362.1_171113_171380_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|708aa|down_2|LR134362.1_171455_173579_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	cas3|694aa|down_3|LR134362.1_173578_175660_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|275aa|down_4|LR134362.1_175712_176537_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|618aa|down_5|LR134362.1_182432_184286_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|471aa|down_6|LR134362.1_184436_185849_+	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|647aa|down_7|LR134362.1_186133_188074_+	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|299aa|down_8|LR134362.1_188137_189034_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|337aa|down_9|LR134362.1_189035_190046_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase
GCA_900637275.1_50465_C02	LR134362	[Pasteurella] aerogenes strain NCTC13378 genome assembly, chromosome: 1	2	653211-653348	2	CRISPRCasFinder	no	DEDDh	cas3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,DEDDh,RT,DinG,csa3,cas9	Unclear	AATTTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT	52	0	0	NA	NA	NA	1	1	Orphan	cas3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,DEDDh,RT,DinG,csa3,cas9	NA|46aa|up_7|LR134362.1_644801_644939_+,NA	NA|184aa|up_9|LR134362.1_643298_643850_-	pfam07273, DUF1439, Protein of unknown function (DUF1439)	NA|249aa|up_8|LR134362.1_644027_644774_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|46aa|up_7|LR134362.1_644801_644939_+	NA	NA|152aa|up_6|LR134362.1_645247_645703_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|495aa|up_5|LR134362.1_645725_647210_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|835aa|up_4|LR134362.1_647231_649736_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|216aa|up_3|LR134362.1_649841_650489_+	PRK10826, PRK10826, hexitol phosphatase HxpB	NA|131aa|up_2|LR134362.1_650526_650919_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|310aa|up_1|LR134362.1_650924_651854_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|350aa|up_0|LR134362.1_651923_652973_-	PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed	DEDDh|190aa|down_0|LR134362.1_653474_654044_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|350aa|down_1|LR134362.1_654114_655164_+	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	NA|86aa|down_2|LR134362.1_655392_655650_+	PRK10850, PRK10850, phosphocarrier protein Hpr	NA|576aa|down_3|LR134362.1_655758_657486_+	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI	NA|167aa|down_4|LR134362.1_657546_658047_+	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional	NA|888aa|down_5|LR134362.1_658353_661017_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|631aa|down_6|LR134362.1_661101_662994_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|474aa|down_7|LR134362.1_663086_664508_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|171aa|down_8|LR134362.1_664733_665246_+	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA|147aa|down_9|LR134362.1_665332_665773_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
GCA_900637275.1_50465_C02	LR134362	[Pasteurella] aerogenes strain NCTC13378 genome assembly, chromosome: 1	3	2210971-2213183	1,3,2,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas9,cas1,cas2	cas3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,DEDDh,RT,DinG,csa3,cas9	Type II-A,Type II-B,,Type II-C	ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAA,ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC,ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC,ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	35,36,36,36	0	0	NA	NA	NA:NA:NA:NA	30,33,33,30	33	,TypeII-A,TypeII-B,TypeII-C	cas3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1,DEDDh,RT,DinG,csa3,cas9	NA,NA|153aa|down_1|LR134362.1_2214448_2214907_+,NA|469aa|down_8|LR134362.1_2222087_2223494_+	cas3|463aa|up_9|LR134362.1_2197339_2198728_-	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	NA|237aa|up_8|LR134362.1_2198810_2199521_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|193aa|up_7|LR134362.1_2199536_2200115_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|346aa|up_6|LR134362.1_2200145_2201183_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|72aa|up_5|LR134362.1_2201413_2201629_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|587aa|up_4|LR134362.1_2201755_2203516_+	PRK05667, dnaG, DNA primase; Validated	NA|623aa|up_3|LR134362.1_2203591_2205460_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	cas9|1057aa|up_2|LR134362.1_2206242_2209413_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|305aa|up_1|LR134362.1_2209470_2210385_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|109aa|up_0|LR134362.1_2210377_2210704_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|96aa|down_0|LR134362.1_2213934_2214222_+	COG5005, COG5005, Mu-like prophage protein gpG [General function prediction only]	NA|153aa|down_1|LR134362.1_2214448_2214907_+	NA	NA|268aa|down_2|LR134362.1_2215035_2215839_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|248aa|down_3|LR134362.1_2216122_2216866_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|326aa|down_4|LR134362.1_2216858_2217836_-	pfam01032, FecCD, FecCD transport family	NA|267aa|down_5|LR134362.1_2217881_2218682_-	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|643aa|down_6|LR134362.1_2218724_2220653_-	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]	NA|336aa|down_7|LR134362.1_2220898_2221906_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|469aa|down_8|LR134362.1_2222087_2223494_+	NA	NA|389aa|down_9|LR134362.1_2223486_2224653_+	cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like
