assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	1	140821-140945	1	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	AACAAACCGGGTCGCACGCCGCGCATGATGAGTGGC	36	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA,NA|993aa|down_7|LR134376.1_149545_152524_+,NA|176aa|down_8|LR134376.1_153449_153977_-	NA|610aa|up_9|LR134376.1_130502_132332_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|277aa|up_8|LR134376.1_132452_133283_-	pfam08668, HDOD, HDOD domain	NA|140aa|up_7|LR134376.1_133370_133790_-	PRK10449, PRK10449, heat shock protein HslJ	NA|454aa|up_6|LR134376.1_134073_135435_-	PRK11678, PRK11678, putative chaperone; Provisional	NA|330aa|up_5|LR134376.1_135537_136527_-	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains	NA|155aa|up_4|LR134376.1_136604_137069_-	pfam05981, CreA, CreA protein	NA|150aa|up_3|LR134376.1_137085_137535_-	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|288aa|up_2|LR134376.1_137638_138502_-	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|129aa|up_1|LR134376.1_138553_138940_-	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA	NA|444aa|up_0|LR134376.1_139403_140735_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|454aa|down_0|LR134376.1_141091_142453_+	PRK07480, PRK07480, putative aminotransferase; Validated	NA|366aa|down_1|LR134376.1_142507_143605_+	PRK10682, PRK10682, putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional	NA|360aa|down_2|LR134376.1_143728_144808_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|385aa|down_3|LR134376.1_144884_146039_+	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|302aa|down_4|LR134376.1_146035_146941_+	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|281aa|down_5|LR134376.1_146937_147780_+	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|243aa|down_6|LR134376.1_147869_148598_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|993aa|down_7|LR134376.1_149545_152524_+	NA	NA|176aa|down_8|LR134376.1_153449_153977_-	NA	NA|152aa|down_9|LR134376.1_154100_154556_-	PRK11688, PRK11688, thioesterase family protein
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	2	321323-321414	2	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	ATTCGTGTTCGAACATCAGGAACAGAT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA|34aa|up_6|LR134376.1_314131_314233_+,NA	NA|224aa|up_9|LR134376.1_311162_311834_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|318aa|up_8|LR134376.1_311833_312787_+	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional	NA|285aa|up_7|LR134376.1_313247_314102_+	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|34aa|up_6|LR134376.1_314131_314233_+	NA	NA|220aa|up_5|LR134376.1_314232_314892_+	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|235aa|up_4|LR134376.1_314903_315608_+	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial	NA|412aa|up_3|LR134376.1_315763_316999_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|313aa|up_2|LR134376.1_316991_317930_+	PRK13776, PRK13776, formimidoylglutamase; Provisional	NA|568aa|up_1|LR134376.1_317997_319701_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|511aa|up_0|LR134376.1_319702_321235_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|504aa|down_0|LR134376.1_322695_324207_-	cd01948, EAL, EAL domain	NA|651aa|down_1|LR134376.1_324699_326652_+	PRK11059, PRK11059, regulatory protein CsrD; Provisional	NA|316aa|down_2|LR134376.1_326674_327622_-	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]	NA|288aa|down_3|LR134376.1_327691_328555_+	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]	NA|198aa|down_4|LR134376.1_328652_329246_+	pfam05137, PilN, Fimbrial assembly protein (PilN)	NA|216aa|down_5|LR134376.1_329245_329893_+	pfam04350, PilO, Pilus assembly protein, PilO	NA|115aa|down_6|LR134376.1_329885_330230_+	TIGR02500, Yop_proteins_translocation_protein_D, type III secretion apparatus protein, YscD/HrpQ family	NA|563aa|down_7|LR134376.1_330300_331989_+	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL	NA|297aa|down_8|LR134376.1_332071_332962_+	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily	NA|365aa|down_9|LR134376.1_332958_334053_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	3	949077-949183	3	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	CACAGAGACGACATGGTGCTGCTG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA|40aa|up_5|LR134376.1_942721_942841_-,NA|30aa|up_3|LR134376.1_944962_945052_+,NA|247aa|down_3|LR134376.1_951952_952693_+	NA|348aa|up_9|LR134376.1_937508_938552_+	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|606aa|up_8|LR134376.1_938634_940452_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|361aa|up_7|LR134376.1_940438_941521_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|334aa|up_6|LR134376.1_941517_942519_+	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|40aa|up_5|LR134376.1_942721_942841_-	NA	NA|484aa|up_4|LR134376.1_943119_944571_-	cd03890, M20_pepD, M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide	NA|30aa|up_3|LR134376.1_944962_945052_+	NA	NA|156aa|up_2|LR134376.1_945510_945978_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|423aa|up_1|LR134376.1_946150_947419_+	PRK05077, frsA, esterase FrsA	NA|131aa|up_0|LR134376.1_947481_947874_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|418aa|down_0|LR134376.1_949212_950466_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|212aa|down_1|LR134376.1_950621_951257_+	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain	NA|144aa|down_2|LR134376.1_951317_951749_-	pfam00582, Usp, Universal stress protein family	NA|247aa|down_3|LR134376.1_951952_952693_+	NA	NA|172aa|down_4|LR134376.1_952735_953251_-	cd18098, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|876aa|down_5|LR134376.1_953568_956196_+	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|253aa|down_6|LR134376.1_956218_956977_+	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|195aa|down_7|LR134376.1_957103_957688_+	pfam03861, ANTAR, ANTAR domain	NA|452aa|down_8|LR134376.1_957976_959332_+	pfam13379, NMT1_2, NMT1-like family	NA|320aa|down_9|LR134376.1_959346_960306_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	4	1524549-1524658	4	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	GCCATCAGCTCAGGCCAACTATCTCGCCCTGCTC	34	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA|273aa|up_4|LR134376.1_1518691_1519510_+,NA|144aa|down_0|LR134376.1_1526434_1526866_+,NA|246aa|down_3|LR134376.1_1528508_1529246_+,NA|97aa|down_9|LR134376.1_1536806_1537097_-	NA|243aa|up_9|LR134376.1_1513985_1514714_+	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold	NA|227aa|up_8|LR134376.1_1514823_1515504_+	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|352aa|up_7|LR134376.1_1515500_1516556_+	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein	NA|260aa|up_6|LR134376.1_1516765_1517545_+	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|348aa|up_5|LR134376.1_1517655_1518699_+	pfam06406, StbA, StbA protein	NA|273aa|up_4|LR134376.1_1518691_1519510_+	NA	NA|252aa|up_3|LR134376.1_1519616_1520372_-	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	NA|410aa|up_2|LR134376.1_1520368_1521598_-	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional	NA|220aa|up_1|LR134376.1_1521805_1522465_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|550aa|up_0|LR134376.1_1522804_1524454_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|144aa|down_0|LR134376.1_1526434_1526866_+	NA	NA|301aa|down_1|LR134376.1_1526936_1527839_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|187aa|down_2|LR134376.1_1527948_1528509_+	PRK03757, PRK03757, YceI family protein	NA|246aa|down_3|LR134376.1_1528508_1529246_+	NA	NA|374aa|down_4|LR134376.1_1529431_1530553_+	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain	NA|104aa|down_5|LR134376.1_1530626_1530938_+	COG3526, COG3526, Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]	NA|408aa|down_6|LR134376.1_1531069_1532293_-	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|634aa|down_7|LR134376.1_1533348_1535250_+	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|367aa|down_8|LR134376.1_1535365_1536466_-	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional	NA|97aa|down_9|LR134376.1_1536806_1537097_-	NA
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	5	1991356-1991468	5	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	TGCTGAAATAAGCGGCTGGATCAGCGCT	28	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA,NA	NA|298aa|up_9|LR134376.1_1980955_1981849_-	COG4171, SapC, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|320aa|up_8|LR134376.1_1981998_1982958_-	PRK15110, PRK15110, peptide ABC transporter permease SapB	NA|532aa|up_7|LR134376.1_1983037_1984633_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|347aa|up_6|LR134376.1_1984800_1985841_-	TIGR02974, psp_operon_transcriptional_activator, psp operon transcriptional activator PspF	NA|227aa|up_5|LR134376.1_1986036_1986717_+	TIGR02977, phage_shock_protein_A, phage shock protein A	NA|79aa|up_4|LR134376.1_1986720_1986957_+	PRK09458, pspB, envelope stress response membrane protein PspB	NA|134aa|up_3|LR134376.1_1987051_1987453_+	TIGR02978, Phage_shock_protein_C	NA|469aa|up_2|LR134376.1_1987520_1988927_+	pfam04317, DUF463, YcjX-like family, DUF463	NA|347aa|up_1|LR134376.1_1988987_1990028_+	PRK05415, PRK05415, hypothetical protein; Provisional	NA|265aa|up_0|LR134376.1_1990183_1990978_+	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed	NA|516aa|down_0|LR134376.1_1991670_1993218_+	PRK10820, PRK10820, transcriptional regulator TyrR	NA|181aa|down_1|LR134376.1_1993401_1993944_+	pfam13689, DUF4154, Domain of unknown function (DUF4154)	NA|415aa|down_2|LR134376.1_1993940_1995185_+	PRK09966, PRK09966, diguanylate cyclase DgcN	NA|163aa|down_3|LR134376.1_1995222_1995711_+	PRK09967, PRK09967, OmpA family protein	NA|449aa|down_4|LR134376.1_1996036_1997383_+	PRK09058, PRK09058, heme anaerobic degradation radical SAM methyltransferase ChuW/HutW	NA|454aa|down_5|LR134376.1_1997445_1998807_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|305aa|down_6|LR134376.1_1998934_1999849_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|141aa|down_7|LR134376.1_2000021_2000444_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|251aa|down_8|LR134376.1_2000443_2001196_-	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|257aa|down_9|LR134376.1_2001198_2001969_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	6	2478251-2478373	6	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	CAACAGGCGAATCGAGATGAGCACGCCGATTT	32	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA,NA	NA|223aa|up_9|LR134376.1_2464183_2464852_-	PRK10847, PRK10847, DedA family protein	NA|94aa|up_8|LR134376.1_2464993_2465275_-	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|671aa|up_7|LR134376.1_2465271_2467284_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|562aa|up_6|LR134376.1_2468266_2469952_+	PRK04972, PRK04972, putative transporter; Provisional	NA|511aa|up_5|LR134376.1_2470161_2471694_+	cd13403, MLTF-like, membrane-bound lytic murein transglycosylase F (MLTF) and similar proteins	NA|404aa|up_4|LR134376.1_2471851_2473063_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|152aa|up_3|LR134376.1_2473310_2473766_+	COG3012, COG3012, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|up_2|LR134376.1_2473957_2475658_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|426aa|up_1|LR134376.1_2475654_2476932_+	TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit	NA|401aa|up_0|LR134376.1_2477035_2478238_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|5131aa|down_0|LR134376.1_2478609_2494002_-	TIGR03660, T1SS_rpt_143, T1SS-143 repeat domain	NA|498aa|down_1|LR134376.1_2494676_2496170_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|199aa|down_2|LR134376.1_2496220_2496817_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|227aa|down_3|LR134376.1_2496813_2497494_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|319aa|down_4|LR134376.1_2497490_2498447_+	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|658aa|down_5|LR134376.1_2498716_2500690_+	TIGR03145, cyt_nit_nrfE, cytochrome c nitrate reductase biogenesis protein NrfE	NA|189aa|down_6|LR134376.1_2500686_2501253_+	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif	NA|395aa|down_7|LR134376.1_2501249_2502434_+	TIGR03147, cyt_nit_nrfF, cytochrome c nitrite reductase, accessory protein NrfF	NA|152aa|down_8|LR134376.1_2502526_2502982_+	cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|307aa|down_9|LR134376.1_2503397_2504318_+	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	7	2908362-2908495	7	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	GTCATGATGGCTCCGGCGACAGACGTCGATATGCTGGTGCGTCACC	46	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA,NA	NA|384aa|up_9|LR134376.1_2896799_2897951_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|207aa|up_8|LR134376.1_2897950_2898571_+	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|393aa|up_7|LR134376.1_2898758_2899937_+	PHA02560, FI, major tail sheath protein; Provisional	NA|173aa|up_6|LR134376.1_2899946_2900465_+	PHA02600, FII, major tail tube protein; Provisional	NA|105aa|up_5|LR134376.1_2900531_2900846_+	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|44aa|up_4|LR134376.1_2900854_2900986_+	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|816aa|up_3|LR134376.1_2900982_2903430_+	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|164aa|up_2|LR134376.1_2903442_2903934_+	COG3499, COG3499, Phage protein U [General function prediction only]	NA|387aa|up_1|LR134376.1_2903933_2905094_+	PHA02561, D, tail protein; Provisional	NA|185aa|up_0|LR134376.1_2905671_2906226_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|215aa|down_0|LR134376.1_2908674_2909319_-	PRK09483, PRK09483, response regulator; Provisional	NA|202aa|down_1|LR134376.1_2909567_2910173_-	pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family, N-terminal region	NA|137aa|down_2|LR134376.1_2910184_2910595_-	pfam14537, Cytochrom_c3_2, Cytochrome c3	NA|539aa|down_3|LR134376.1_2910606_2912223_-	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c	NA|609aa|down_4|LR134376.1_2912386_2914213_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|217aa|down_5|LR134376.1_2914209_2914860_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|254aa|down_6|LR134376.1_2914918_2915680_-	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|63aa|down_7|LR134376.1_2915676_2915865_-	PRK11827, PRK11827, protein YcaR	NA|329aa|down_8|LR134376.1_2916075_2917062_-	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed	NA|590aa|down_9|LR134376.1_2917061_2918831_-	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	8	2954020-2954124	8	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	ATGCCTTAGCCGTTGAACCGACCG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA|179aa|up_2|LR134376.1_2951084_2951621_-,NA|47aa|down_4|LR134376.1_2960392_2960533_+	NA|267aa|up_9|LR134376.1_2944174_2944975_+	cd13629, PBP2_Dsm1740, Amino acid-binding domain of the type 2 periplasmic binding fold superfamily	NA|329aa|up_8|LR134376.1_2945046_2946033_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|250aa|up_7|LR134376.1_2946087_2946837_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|154aa|up_6|LR134376.1_2946913_2947375_-	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059)	NA|306aa|up_5|LR134376.1_2947440_2948358_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|467aa|up_4|LR134376.1_2948433_2949834_-	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family	NA|301aa|up_3|LR134376.1_2949843_2950746_-	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	NA|179aa|up_2|LR134376.1_2951084_2951621_-	NA	NA|444aa|up_1|LR134376.1_2951759_2953091_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|237aa|up_0|LR134376.1_2953283_2953994_-	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|273aa|down_0|LR134376.1_2954165_2954984_-	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional	NA|550aa|down_1|LR134376.1_2955105_2956755_-	COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]	NA|746aa|down_2|LR134376.1_2956788_2959026_-	COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|180aa|down_3|LR134376.1_2959231_2959771_-	PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional	NA|47aa|down_4|LR134376.1_2960392_2960533_+	NA	NA|536aa|down_5|LR134376.1_2961240_2962848_+	PRK09255, PRK09255, malate synthase; Validated	NA|438aa|down_6|LR134376.1_2962920_2964234_+	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|248aa|down_7|LR134376.1_2964322_2965066_-	PRK08084, PRK08084, DnaA inactivator Hda	NA|344aa|down_8|LR134376.1_2965183_2966215_-	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066)	NA|209aa|down_9|LR134376.1_2966365_2966992_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	9	3143721-3143812	9	CRISPRCasFinder	no	RT	WYL,DinG,csa3,DEDDh,cas3,RT	Unclear	CGGGTGATGCACAGGGCCACCAT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA|73aa|up_7|LR134376.1_3128340_3128559_+,NA	NA|269aa|up_9|LR134376.1_3122774_3123581_+	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	RT|1240aa|up_8|LR134376.1_3124395_3128115_+	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|73aa|up_7|LR134376.1_3128340_3128559_+	NA	NA|81aa|up_6|LR134376.1_3129006_3129249_+	pfam11730, DUF3297, Protein of unknown function (DUF3297)	NA|404aa|up_5|LR134376.1_3129473_3130685_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|2375aa|up_4|LR134376.1_3131519_3138644_+	TIGR01965, VCBS_repeat, VCBS repeat	NA|368aa|up_3|LR134376.1_3138846_3139950_+	cd06259, YdcF-like, YdcF-like	NA|325aa|up_2|LR134376.1_3140239_3141214_+	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|256aa|up_1|LR134376.1_3141230_3141998_+	PRK11248, tauB, taurine ABC transporter ATP-binding subunit	NA|275aa|up_0|LR134376.1_3141994_3142819_+	PRK10160, PRK10160, taurine ABC transporter permease TauC	NA|123aa|down_0|LR134376.1_3143889_3144258_-	pfam07237, DUF1428, Protein of unknown function (DUF1428)	NA|454aa|down_1|LR134376.1_3144333_3145695_-	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily	NA|297aa|down_2|LR134376.1_3145970_3146861_-	PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional	NA|111aa|down_3|LR134376.1_3146874_3147207_-	PRK10582, PRK10582, cytochrome o ubiquinol oxidase subunit IV; Provisional	NA|205aa|down_4|LR134376.1_3147207_3147822_-	PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional	NA|659aa|down_5|LR134376.1_3147826_3149803_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|340aa|down_6|LR134376.1_3149806_3150826_-	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional	NA|148aa|down_7|LR134376.1_3151385_3151829_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|306aa|down_8|LR134376.1_3151950_3152868_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|111aa|down_9|LR134376.1_3152979_3153312_-	pfam12321, DUF3634, Protein of unknown function (DUF3634)
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	10	3382045-3382143	10	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	CCCCTGCCGCCGTGCCTGCCAGGT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA,NA|34aa|down_7|LR134376.1_3389229_3389331_-	NA|286aa|up_9|LR134376.1_3370538_3371396_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|460aa|up_8|LR134376.1_3371516_3372896_+	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|83aa|up_7|LR134376.1_3373009_3373258_+	PRK11037, PRK11037, hypothetical protein; Provisional	NA|377aa|up_6|LR134376.1_3373288_3374419_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|466aa|up_5|LR134376.1_3374664_3376062_+	TIGR03173, pbuX, xanthine permease	NA|238aa|up_4|LR134376.1_3376161_3376875_+	cd16443, LplA, lipoate-protein ligase	NA|457aa|up_3|LR134376.1_3377083_3378454_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|441aa|up_2|LR134376.1_3379004_3380327_+	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase	NA|323aa|up_1|LR134376.1_3380406_3381375_-	PRK10734, PRK10734, putative calcium/sodium:proton antiporter; Provisional	NA|158aa|up_0|LR134376.1_3381499_3381973_-	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|72aa|down_0|LR134376.1_3382813_3383029_+	pfam06526, DUF1107, Protein of unknown function (DUF1107)	NA|248aa|down_1|LR134376.1_3383124_3383868_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|365aa|down_2|LR134376.1_3384039_3385134_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|396aa|down_3|LR134376.1_3385143_3386331_-	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|340aa|down_4|LR134376.1_3386399_3387419_-	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|101aa|down_5|LR134376.1_3387920_3388223_-	pfam11006, DUF2845, Protein of unknown function (DUF2845)	NA|338aa|down_6|LR134376.1_3388219_3389233_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|34aa|down_7|LR134376.1_3389229_3389331_-	NA	NA|294aa|down_8|LR134376.1_3389327_3390209_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|204aa|down_9|LR134376.1_3390326_3390938_-	PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	11	3724666-3724932	11	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	CAGGAGACCAGTAGCAGCTTCGACAACCAGGCCTTCCGGCGCCTGGACTGAC	52	0	0	NA	NA	NA	2	2	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA,NA|68aa|down_3|LR134376.1_3732587_3732791_-	NA|620aa|up_9|LR134376.1_3713409_3715269_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|40aa|up_8|LR134376.1_3715272_3715392_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|501aa|up_7|LR134376.1_3715408_3716911_-	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional	NA|153aa|up_6|LR134376.1_3716934_3717393_-	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA|501aa|up_5|LR134376.1_3717425_3718928_-	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|376aa|up_4|LR134376.1_3719060_3720188_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|247aa|up_3|LR134376.1_3720272_3721013_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|348aa|up_2|LR134376.1_3721614_3722658_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|218aa|up_1|LR134376.1_3722638_3723292_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|267aa|up_0|LR134376.1_3723318_3724119_+	PRK11063, metQ, D-methionine ABC transporter substrate-binding protein MetQ	NA|658aa|down_0|LR134376.1_3724961_3726935_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|404aa|down_1|LR134376.1_3726973_3728185_-	cd01948, EAL, EAL domain	NA|1422aa|down_2|LR134376.1_3728177_3732443_-	PRK15347, PRK15347, two component system sensor kinase	NA|68aa|down_3|LR134376.1_3732587_3732791_-	NA	NA|455aa|down_4|LR134376.1_3733076_3734441_-	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional	NA|771aa|down_5|LR134376.1_3734478_3736791_-	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|333aa|down_6|LR134376.1_3736992_3737991_+	pfam11059, DUF2860, Protein of unknown function (DUF2860)	NA|233aa|down_7|LR134376.1_3738054_3738753_-	pfam11813, DUF3334, Protein of unknown function (DUF3334)	NA|143aa|down_8|LR134376.1_3738861_3739290_-	pfam01230, HIT, HIT domain	NA|208aa|down_9|LR134376.1_3739361_3739985_-	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057)
GCA_900637545.1_51438_G01	LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	12	3867197-3867312	12	CRISPRCasFinder	no		WYL,DinG,csa3,DEDDh,cas3,RT	Orphan	AAAAACAACTCCCGGCTCTTCAACTGGCGTTTGC	34	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,csa3,DEDDh,cas3,RT	NA,NA|129aa|down_9|LR134376.1_3877047_3877434_-	NA|106aa|up_9|LR134376.1_3853140_3853458_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|433aa|up_8|LR134376.1_3853689_3854988_-	PRK00077, eno, enolase; Provisional	NA|546aa|up_7|LR134376.1_3855077_3856715_-	PRK05380, pyrG, CTP synthetase; Validated	NA|266aa|up_6|LR134376.1_3856856_3857654_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|737aa|up_5|LR134376.1_3857733_3859944_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|441aa|up_4|LR134376.1_3860269_3861592_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|904aa|up_3|LR134376.1_3861827_3864539_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|160aa|up_2|LR134376.1_3864675_3865155_+	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown]	NA|308aa|up_1|LR134376.1_3865158_3866082_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|246aa|up_0|LR134376.1_3866280_3867018_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|302aa|down_0|LR134376.1_3867975_3868881_-	PRK00089, era, GTPase Era; Reviewed	NA|224aa|down_1|LR134376.1_3868877_3869549_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|308aa|down_2|LR134376.1_3869549_3870473_-	PRK10861, PRK10861, signal peptidase I	NA|598aa|down_3|LR134376.1_3870476_3872270_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|157aa|down_4|LR134376.1_3872441_3872912_-	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC	NA|327aa|down_5|LR134376.1_3872993_3873974_-	PRK09455, rseB, anti-sigma E factor; Provisional	NA|195aa|down_6|LR134376.1_3873995_3874580_-	PRK10863, PRK10863, anti-sigma-E factor RseA	NA|194aa|down_7|LR134376.1_3874603_3875185_-	PRK11923, algU, RNA polymerase sigma factor AlgU; Provisional	NA|536aa|down_8|LR134376.1_3875366_3876974_+	PRK09077, PRK09077, L-aspartate oxidase; Provisional	NA|129aa|down_9|LR134376.1_3877047_3877434_-	NA
