assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	2	378893-379069	1	PILER-CR	no	cas6,csm3gr7,cas10,csx10gr5,RT	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Type III-A,Type III-C,Type III-B,Type III-D	GATCGTCTGAAACCACCGCGAACCTTAAAGCGGATTGAAACA	42	0	0	NA	NA	NA	2	2	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|466aa|up_9|LR134406.1_364768_366166_+,NA|456aa|up_8|LR134406.1_366162_367530_+,cas6|318aa|up_6|LR134406.1_369782_370736_+,NA|148aa|up_0|LR134406.1_377882_378326_+,NA|420aa|down_8|LR134406.1_386872_388132_-	NA|466aa|up_9|LR134406.1_364768_366166_+	NA	NA|456aa|up_8|LR134406.1_366162_367530_+	NA	NA|605aa|up_7|LR134406.1_367965_369780_+	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	cas6|318aa|up_6|LR134406.1_369782_370736_+	NA	csm3gr7|834aa|up_5|LR134406.1_370728_373230_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	cas10|505aa|up_4|LR134406.1_373241_374756_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|209aa|up_3|LR134406.1_374752_375379_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx10gr5|399aa|up_2|LR134406.1_375375_376572_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	csm3gr7|439aa|up_1|LR134406.1_376573_377890_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|148aa|up_0|LR134406.1_377882_378326_+	NA	RT|618aa|down_0|LR134406.1_379203_381057_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|95aa|down_1|LR134406.1_382288_382573_+	pfam02467, Whib, Transcription factor WhiB	NA|55aa|down_2|LR134406.1_382941_383106_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|154aa|down_3|LR134406.1_383102_383564_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|206aa|down_4|LR134406.1_383560_384178_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|208aa|down_5|LR134406.1_384156_384780_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|256aa|down_6|LR134406.1_385188_385956_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|271aa|down_7|LR134406.1_385973_386786_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|420aa|down_8|LR134406.1_386872_388132_-	NA	NA|675aa|down_9|LR134406.1_388131_390156_-	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298)
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	3	381348-381672	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,csm3gr7,cas10,csx10gr5,RT	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Type III-A,Type III-C,Type III-B,Type III-D	GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC,GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC,GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	3,4,4	4	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|456aa|up_9|LR134406.1_366162_367530_+,cas6|318aa|up_7|LR134406.1_369782_370736_+,NA|148aa|up_1|LR134406.1_377882_378326_+,NA|420aa|down_7|LR134406.1_386872_388132_-,NA|410aa|down_9|LR134406.1_390531_391761_-	NA|456aa|up_9|LR134406.1_366162_367530_+	NA	NA|605aa|up_8|LR134406.1_367965_369780_+	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	cas6|318aa|up_7|LR134406.1_369782_370736_+	NA	csm3gr7|834aa|up_6|LR134406.1_370728_373230_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	cas10|505aa|up_5|LR134406.1_373241_374756_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|209aa|up_4|LR134406.1_374752_375379_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx10gr5|399aa|up_3|LR134406.1_375375_376572_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	csm3gr7|439aa|up_2|LR134406.1_376573_377890_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|148aa|up_1|LR134406.1_377882_378326_+	NA	RT|618aa|up_0|LR134406.1_379203_381057_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|95aa|down_0|LR134406.1_382288_382573_+	pfam02467, Whib, Transcription factor WhiB	NA|55aa|down_1|LR134406.1_382941_383106_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|154aa|down_2|LR134406.1_383102_383564_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|206aa|down_3|LR134406.1_383560_384178_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|208aa|down_4|LR134406.1_384156_384780_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|256aa|down_5|LR134406.1_385188_385956_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|271aa|down_6|LR134406.1_385973_386786_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|420aa|down_7|LR134406.1_386872_388132_-	NA	NA|675aa|down_8|LR134406.1_388131_390156_-	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298)	NA|410aa|down_9|LR134406.1_390531_391761_-	NA
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	5	467301-467380	4	CRISPRCasFinder	no		csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Orphan	GAGCAGCCCGTGTCGAAACCATC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|156aa|up_1|LR134406.1_466522_466990_+,NA|453aa|down_5|LR134406.1_473287_474646_+	NA|267aa|up_9|LR134406.1_457929_458730_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|123aa|up_8|LR134406.1_458803_459172_+	pfam02152, FolB, Dihydroneopterin aldolase	NA|188aa|up_7|LR134406.1_459152_459716_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|166aa|up_6|LR134406.1_459712_460210_+	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|220aa|up_5|LR134406.1_460306_460966_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|108aa|up_4|LR134406.1_461342_461666_+	pfam11774, Lsr2, Lsr2	NA|832aa|up_3|LR134406.1_462519_465015_+	CHL00095, clpC, Clp protease ATP binding subunit	NA|354aa|up_2|LR134406.1_465380_466442_-	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional	NA|156aa|up_1|LR134406.1_466522_466990_+	NA	NA|96aa|up_0|LR134406.1_466986_467274_+	pfam13601, HTH_34, Winged helix DNA-binding domain	NA|343aa|down_0|LR134406.1_467834_468863_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|468aa|down_1|LR134406.1_469028_470432_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|244aa|down_2|LR134406.1_470666_471398_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|270aa|down_3|LR134406.1_471457_472267_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|303aa|down_4|LR134406.1_472266_473175_+	pfam01619, Pro_dh, Proline dehydrogenase	NA|453aa|down_5|LR134406.1_473287_474646_+	NA	NA|257aa|down_6|LR134406.1_474752_475523_+	pfam02517, Abi, CAAX protease self-immunity	NA|340aa|down_7|LR134406.1_475612_476632_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|261aa|down_8|LR134406.1_476628_477411_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|527aa|down_9|LR134406.1_477861_479442_+	pfam02602, HEM4, Uroporphyrinogen-III synthase HemD
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	6	658631-660770	3,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas8u1,cas3,csb2gr5,csb1gr7	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Unclear	GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA,GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG,GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	35,36,36	0	0	NA	NA	NA:NA:NA	29,29,29	29	Unclear	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|225aa|up_8|LR134406.1_650816_651491_+,NA|185aa|up_4|LR134406.1_653829_654384_-,NA|209aa|up_3|LR134406.1_654743_655370_-,cas8u1|329aa|down_2|LR134406.1_662903_663890_-	NA|350aa|up_9|LR134406.1_649606_650656_-	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism]	NA|225aa|up_8|LR134406.1_650816_651491_+	NA	NA|191aa|up_7|LR134406.1_651632_652205_+	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|232aa|up_6|LR134406.1_652201_652897_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|290aa|up_5|LR134406.1_652893_653763_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|185aa|up_4|LR134406.1_653829_654384_-	NA	NA|209aa|up_3|LR134406.1_654743_655370_-	NA	NA|257aa|up_2|LR134406.1_655526_656297_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|288aa|up_1|LR134406.1_656296_657160_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|286aa|up_0|LR134406.1_657163_658021_-	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	cas2|97aa|down_0|LR134406.1_660943_661234_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|559aa|down_1|LR134406.1_661230_662907_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas8u1|329aa|down_2|LR134406.1_662903_663890_-	NA	cas3|956aa|down_3|LR134406.1_663886_666754_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|476aa|down_4|LR134406.1_666750_668178_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	csb1gr7|382aa|down_5|LR134406.1_668179_669325_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|152aa|down_6|LR134406.1_669497_669953_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|714aa|down_7|LR134406.1_670039_672181_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|228aa|down_8|LR134406.1_672149_672833_+	pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus	NA|310aa|down_9|LR134406.1_672849_673779_-	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	7	699349-699459	6	CRISPRCasFinder	no		csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Orphan	CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG	38	1	1	699387-699421	LR134406.1_707402-707436	NA	1	1	Orphan	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|78aa|up_2|LR134406.1_694477_694711_-,NA|34aa|up_0|LR134406.1_699081_699183_+,NA	NA|251aa|up_9|LR134406.1_683951_684704_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|452aa|up_8|LR134406.1_684714_686070_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|456aa|up_7|LR134406.1_686081_687449_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|820aa|up_6|LR134406.1_687476_689936_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|435aa|up_5|LR134406.1_690311_691616_+	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound	NA|335aa|up_4|LR134406.1_691638_692643_+	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional	NA|534aa|up_3|LR134406.1_692668_694270_+	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase	NA|78aa|up_2|LR134406.1_694477_694711_-	NA	NA|1270aa|up_1|LR134406.1_695039_698849_-	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms]	NA|34aa|up_0|LR134406.1_699081_699183_+	NA	NA|567aa|down_0|LR134406.1_699495_701196_-	PRK14479, PRK14479, dihydroxyacetone kinase; Provisional	NA|349aa|down_1|LR134406.1_701351_702398_+	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase	NA|452aa|down_2|LR134406.1_702506_703862_-	cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase	NA|379aa|down_3|LR134406.1_704153_705290_-	pfam04892, VanZ, VanZ like family	NA|461aa|down_4|LR134406.1_705477_706860_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|408aa|down_5|LR134406.1_707070_708294_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|126aa|down_6|LR134406.1_708314_708692_+	cd06445, ATase, The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks	NA|439aa|down_7|LR134406.1_708674_709991_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|156aa|down_8|LR134406.1_710075_710543_-	pfam09991, DUF2232, Predicted membrane protein (DUF2232)	NA|281aa|down_9|LR134406.1_710687_711530_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	8	2401723-2401826	7	CRISPRCasFinder	no		csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Orphan	AACATCCTGACAGCAGCATTCCCCAA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|137aa|up_1|LR134406.1_2400528_2400939_-,NA|133aa|up_0|LR134406.1_2401182_2401581_-,NA|90aa|down_4|LR134406.1_2406513_2406783_+,NA|301aa|down_5|LR134406.1_2406805_2407708_+,NA|485aa|down_7|LR134406.1_2409533_2410988_+	NA|128aa|up_9|LR134406.1_2396576_2396960_-	PRK05593, rplR, 50S ribosomal protein L18; Reviewed	NA|181aa|up_8|LR134406.1_2396959_2397502_-	PRK05498, rplF, 50S ribosomal protein L6; Validated	NA|135aa|up_7|LR134406.1_2397530_2397935_-	PRK00136, rpsH, 30S ribosomal protein S8; Validated	NA|62aa|up_6|LR134406.1_2398027_2398213_-	PRK08061, rpsN, type Z 30S ribosomal protein S14	NA|207aa|up_5|LR134406.1_2398222_2398843_-	PRK00010, rplE, 50S ribosomal protein L5; Validated	NA|124aa|up_4|LR134406.1_2398842_2399214_-	PRK00004, rplX, 50S ribosomal protein L24; Reviewed	NA|123aa|up_3|LR134406.1_2399215_2399584_-	PRK05483, rplN, 50S ribosomal protein L14; Validated	NA|235aa|up_2|LR134406.1_2399982_2400687_+	pfam08887, GAD-like, GAD-like domain	NA|137aa|up_1|LR134406.1_2400528_2400939_-	NA	NA|133aa|up_0|LR134406.1_2401182_2401581_-	NA	NA|109aa|down_0|LR134406.1_2402146_2402473_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|130aa|down_1|LR134406.1_2402469_2402859_-	pfam13613, HTH_Tnp_4, Helix-turn-helix of DDE superfamily endonuclease	NA|543aa|down_2|LR134406.1_2403118_2404747_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|393aa|down_3|LR134406.1_2405338_2406517_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|90aa|down_4|LR134406.1_2406513_2406783_+	NA	NA|301aa|down_5|LR134406.1_2406805_2407708_+	NA	NA|611aa|down_6|LR134406.1_2407704_2409537_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|485aa|down_7|LR134406.1_2409533_2410988_+	NA	NA|506aa|down_8|LR134406.1_2410984_2412502_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|602aa|down_9|LR134406.1_2412514_2414320_+	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	9	2649347-2649437	8	CRISPRCasFinder	no		csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Orphan	CCAGATCCCTCACCCGCGCGGGGCGAACAT	30	0	0	NA	NA	NA	1	1	Orphan	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|65aa|up_7|LR134406.1_2643741_2643936_-,NA|377aa|up_5|LR134406.1_2644629_2645760_-,NA|136aa|up_4|LR134406.1_2645940_2646348_+,NA|209aa|up_1|LR134406.1_2647324_2647951_+,NA|391aa|up_0|LR134406.1_2648062_2649235_-,NA|42aa|down_1|LR134406.1_2650858_2650984_-,NA|738aa|down_8|LR134406.1_2659452_2661666_-	NA|881aa|up_9|LR134406.1_2638394_2641037_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|883aa|up_8|LR134406.1_2641033_2643682_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|65aa|up_7|LR134406.1_2643741_2643936_-	NA	NA|201aa|up_6|LR134406.1_2643986_2644589_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|377aa|up_5|LR134406.1_2644629_2645760_-	NA	NA|136aa|up_4|LR134406.1_2645940_2646348_+	NA	NA|110aa|up_3|LR134406.1_2646344_2646674_+	pfam13601, HTH_34, Winged helix DNA-binding domain	NA|201aa|up_2|LR134406.1_2646728_2647331_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|209aa|up_1|LR134406.1_2647324_2647951_+	NA	NA|391aa|up_0|LR134406.1_2648062_2649235_-	NA	NA|330aa|down_0|LR134406.1_2649862_2650852_+	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|42aa|down_1|LR134406.1_2650858_2650984_-	NA	NA|397aa|down_2|LR134406.1_2651111_2652302_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|217aa|down_3|LR134406.1_2652312_2652963_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|571aa|down_4|LR134406.1_2653458_2655171_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|228aa|down_5|LR134406.1_2655291_2655975_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|289aa|down_6|LR134406.1_2655971_2656838_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|874aa|down_7|LR134406.1_2656834_2659456_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|738aa|down_8|LR134406.1_2659452_2661666_-	NA	NA|121aa|down_9|LR134406.1_2661880_2662243_-	PRK00349, uvrA, excinuclease ABC subunit UvrA
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	10	2897234-2898080	9,3,4	CRISPRCasFinder,CRT,PILER-CR	no	csa3,cas2,cas1,csb2gr5,cas7,cas8u1,cas3	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Type I-A	GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT,GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT,GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	36,36,36	0	0	NA	NA	NA:NA:NA	10,11,10	11	TypeI-A	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|106aa|up_9|LR134406.1_2889469_2889787_-,NA|157aa|up_3|LR134406.1_2894031_2894502_-,NA|30aa|down_1|LR134406.1_2901213_2901303_+,NA|54aa|down_2|LR134406.1_2902037_2902199_+,NA|49aa|down_3|LR134406.1_2902692_2902839_+,NA|41aa|down_4|LR134406.1_2902823_2902946_+,NA|44aa|down_5|LR134406.1_2904142_2904274_+,NA|54aa|down_6|LR134406.1_2904361_2904523_+	NA|106aa|up_9|LR134406.1_2889469_2889787_-	NA	NA|256aa|up_8|LR134406.1_2890094_2890862_-	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|99aa|up_7|LR134406.1_2890951_2891248_+	pfam06781, CrgA, Cell division protein CrgA	NA|226aa|up_6|LR134406.1_2891251_2891929_+	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p)	NA|507aa|up_5|LR134406.1_2891970_2893491_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|155aa|up_4|LR134406.1_2893504_2893969_-	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|157aa|up_3|LR134406.1_2894031_2894502_-	NA	NA|255aa|up_2|LR134406.1_2894622_2895387_-	pfam04016, DUF364, Putative heavy-metal chelation	csa3|115aa|up_1|LR134406.1_2895494_2895839_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|335aa|up_0|LR134406.1_2895835_2896840_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|360aa|down_0|LR134406.1_2898112_2899192_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|30aa|down_1|LR134406.1_2901213_2901303_+	NA	NA|54aa|down_2|LR134406.1_2902037_2902199_+	NA	NA|49aa|down_3|LR134406.1_2902692_2902839_+	NA	NA|41aa|down_4|LR134406.1_2902823_2902946_+	NA	NA|44aa|down_5|LR134406.1_2904142_2904274_+	NA	NA|54aa|down_6|LR134406.1_2904361_2904523_+	NA	cas2|95aa|down_7|LR134406.1_2904781_2905066_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|555aa|down_8|LR134406.1_2905069_2906734_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csb2gr5|499aa|down_9|LR134406.1_2906736_2908233_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	11	2899244-2904609	5,10,4	PILER-CR,CRISPRCasFinder,CRT	no	csa3,cas2,cas1,csb2gr5,cas7,cas8u1,cas3	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Type I-A	GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT,GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT,GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	36,36,36	0	0	NA	NA	NA:NA:NA	73,73,73	73	TypeI-A	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|157aa|up_4|LR134406.1_2894031_2894502_-,NA|292aa|down_6|LR134406.1_2914576_2915452_-	NA|256aa|up_9|LR134406.1_2890094_2890862_-	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|99aa|up_8|LR134406.1_2890951_2891248_+	pfam06781, CrgA, Cell division protein CrgA	NA|226aa|up_7|LR134406.1_2891251_2891929_+	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p)	NA|507aa|up_6|LR134406.1_2891970_2893491_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|155aa|up_5|LR134406.1_2893504_2893969_-	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|157aa|up_4|LR134406.1_2894031_2894502_-	NA	NA|255aa|up_3|LR134406.1_2894622_2895387_-	pfam04016, DUF364, Putative heavy-metal chelation	csa3|115aa|up_2|LR134406.1_2895494_2895839_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|335aa|up_1|LR134406.1_2895835_2896840_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|360aa|up_0|LR134406.1_2898112_2899192_+	pfam13358, DDE_3, DDE superfamily endonuclease	cas2|95aa|down_0|LR134406.1_2904781_2905066_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|555aa|down_1|LR134406.1_2905069_2906734_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csb2gr5|499aa|down_2|LR134406.1_2906736_2908233_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|313aa|down_3|LR134406.1_2908211_2909150_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas8u1|732aa|down_4|LR134406.1_2909146_2911342_-	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc	cas3|835aa|down_5|LR134406.1_2911338_2913843_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	NA|292aa|down_6|LR134406.1_2914576_2915452_-	NA	NA|146aa|down_7|LR134406.1_2915546_2915984_+	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|168aa|down_8|LR134406.1_2915980_2916484_+	COG0716, FldA, Flavodoxins [Energy production and conversion]	NA|181aa|down_9|LR134406.1_2918189_2918732_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	12	3043750-3043837	11	CRISPRCasFinder	no		csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Orphan	CAGGCCGGCTCAACCAGCTTGGGGATG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|77aa|up_3|LR134406.1_3036493_3036724_+,NA|91aa|down_6|LR134406.1_3052280_3052553_+,NA|231aa|down_7|LR134406.1_3052565_3053258_+	NA|394aa|up_9|LR134406.1_3030298_3031480_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|371aa|up_8|LR134406.1_3031563_3032676_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|370aa|up_7|LR134406.1_3032682_3033792_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|305aa|up_6|LR134406.1_3033791_3034706_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|333aa|up_5|LR134406.1_3034702_3035701_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|up_4|LR134406.1_3035693_3036497_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|77aa|up_3|LR134406.1_3036493_3036724_+	NA	NA|600aa|up_2|LR134406.1_3036720_3038520_+	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold	NA|333aa|up_1|LR134406.1_3038740_3039739_-	pfam00498, FHA, FHA domain	NA|1042aa|up_0|LR134406.1_3040216_3043342_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|372aa|down_0|LR134406.1_3043888_3045004_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|317aa|down_1|LR134406.1_3045248_3046199_+	COG5340, COG5340, Predicted transcriptional regulator [Transcription]	NA|331aa|down_2|LR134406.1_3046331_3047324_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|701aa|down_3|LR134406.1_3047486_3049589_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|down_4|LR134406.1_3049585_3050245_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|425aa|down_5|LR134406.1_3050571_3051846_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|91aa|down_6|LR134406.1_3052280_3052553_+	NA	NA|231aa|down_7|LR134406.1_3052565_3053258_+	NA	NA|259aa|down_8|LR134406.1_3053380_3054157_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|334aa|down_9|LR134406.1_3054153_3055155_-	TIGR03869, transport_system_permease_protein, proposed F420-0 ABC transporter, permease protein
GCA_900637725.1_52551_C01	LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	13	3292711-3292808	12	CRISPRCasFinder	no		csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	Orphan	GGTTGAGCCGACCCGCGAGCGCCAGCGAGCAGGTCG	36	0	0	NA	NA	NA	1	1	Orphan	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	NA|151aa|up_2|LR134406.1_3289796_3290249_-,NA|1082aa|down_0|LR134406.1_3292965_3296211_-,NA|163aa|down_3|LR134406.1_3297629_3298118_-,NA|158aa|down_4|LR134406.1_3298552_3299026_-,NA|165aa|down_5|LR134406.1_3299151_3299646_-,NA|254aa|down_6|LR134406.1_3300294_3301056_+	NA|207aa|up_9|LR134406.1_3280742_3281363_-	cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)	NA|407aa|up_8|LR134406.1_3281450_3282671_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|619aa|up_7|LR134406.1_3282672_3284529_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|516aa|up_6|LR134406.1_3284766_3286314_+	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain	NA|45aa|up_5|LR134406.1_3286310_3286445_+	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit	NA|794aa|up_4|LR134406.1_3286483_3288865_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|300aa|up_3|LR134406.1_3288861_3289761_+	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only]	NA|151aa|up_2|LR134406.1_3289796_3290249_-	NA	NA|196aa|up_1|LR134406.1_3290331_3290919_+	COG4894, COG4894, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_0|LR134406.1_3291031_3291460_+	COG3012, COG3012, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1082aa|down_0|LR134406.1_3292965_3296211_-	NA	NA|157aa|down_1|LR134406.1_3296460_3296931_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|174aa|down_2|LR134406.1_3297037_3297559_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|163aa|down_3|LR134406.1_3297629_3298118_-	NA	NA|158aa|down_4|LR134406.1_3298552_3299026_-	NA	NA|165aa|down_5|LR134406.1_3299151_3299646_-	NA	NA|254aa|down_6|LR134406.1_3300294_3301056_+	NA	NA|239aa|down_7|LR134406.1_3301135_3301852_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|425aa|down_8|LR134406.1_3301848_3303123_-	pfam08353, DUF1727, Domain of unknown function (DUF1727)	NA|343aa|down_9|LR134406.1_3303263_3304292_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
