assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900638005.1_53550_B01	LR134493	Serratia rubidaea strain NCTC10036 genome assembly, chromosome: 1	2	769617-769721	2	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	Orphan	TCCCCGGGAGCTTAGTAAGCTAAGC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	NA|127aa|up_4|LR134493.1_763245_763626_-,NA	NA|327aa|up_9|LR134493.1_757687_758668_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold	NA|283aa|up_8|LR134493.1_758727_759576_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|288aa|up_7|LR134493.1_759575_760439_+	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	NA|508aa|up_6|LR134493.1_760449_761973_+	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism]	NA|396aa|up_5|LR134493.1_762029_763217_-	PRK07503, PRK07503, methionine gamma-lyase; Provisional	NA|127aa|up_4|LR134493.1_763245_763626_-	NA	NA|397aa|up_3|LR134493.1_763637_764828_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|433aa|up_2|LR134493.1_765095_766394_-	PRK00077, eno, enolase; Provisional	NA|546aa|up_1|LR134493.1_766478_768116_-	PRK05380, pyrG, CTP synthetase; Validated	NA|265aa|up_0|LR134493.1_768495_769290_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|744aa|down_0|LR134493.1_769776_772008_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|443aa|down_1|LR134493.1_772044_773373_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|911aa|down_2|LR134493.1_773435_776168_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|380aa|down_3|LR134493.1_776209_777349_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|295aa|down_4|LR134493.1_777367_778252_-	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|258aa|down_5|LR134493.1_778262_779036_-	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|447aa|down_6|LR134493.1_779072_780413_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|446aa|down_7|LR134493.1_780436_781774_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|451aa|down_8|LR134493.1_781773_783126_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|522aa|down_9|LR134493.1_783576_785142_+	TIGR03248, galactar-dH20, galactarate dehydratase
GCA_900638005.1_53550_B01	LR134493	Serratia rubidaea strain NCTC10036 genome assembly, chromosome: 1	3	1118042-1118429	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,6,5	6	TypeI-F	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	NA|151aa|up_1|LR134493.1_1116872_1117325_+,NA|168aa|up_0|LR134493.1_1117487_1117991_+,NA	NA|287aa|up_9|LR134493.1_1110259_1111120_+	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]	NA|263aa|up_8|LR134493.1_1111116_1111905_+	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional	NA|235aa|up_7|LR134493.1_1111920_1112625_+	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|379aa|up_6|LR134493.1_1112624_1113761_+	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional	NA|187aa|up_5|LR134493.1_1113760_1114321_+	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional	NA|272aa|up_4|LR134493.1_1114311_1115127_+	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional	NA|214aa|up_3|LR134493.1_1115056_1115698_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|145aa|up_2|LR134493.1_1115776_1116211_-	PRK03467, PRK03467, hypothetical protein; Provisional	NA|151aa|up_1|LR134493.1_1116872_1117325_+	NA	NA|168aa|up_0|LR134493.1_1117487_1117991_+	NA	NA|209aa|down_0|LR134493.1_1118624_1119251_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|323aa|down_1|LR134493.1_1119275_1120244_-	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|179aa|down_2|LR134493.1_1120257_1120794_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|191aa|down_3|LR134493.1_1120819_1121392_-	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold	NA|323aa|down_4|LR134493.1_1121413_1122382_-	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|470aa|down_5|LR134493.1_1122381_1123791_-	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]	NA|117aa|down_6|LR134493.1_1124330_1124681_-	smart00886, Dabb, Stress responsive A/B Barrel Domain	NA|163aa|down_7|LR134493.1_1124847_1125336_+	COG1522, Lrp, Transcriptional regulators [Transcription]	cas6f|185aa|down_8|LR134493.1_1127230_1127785_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_9|LR134493.1_1127794_1128796_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)
GCA_900638005.1_53550_B01	LR134493	Serratia rubidaea strain NCTC10036 genome assembly, chromosome: 1	4	1126654-1127101	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	7,7,6	7	TypeI-F	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	NA|151aa|up_9|LR134493.1_1116872_1117325_+,NA|168aa|up_8|LR134493.1_1117487_1117991_+,NA	NA|151aa|up_9|LR134493.1_1116872_1117325_+	NA	NA|168aa|up_8|LR134493.1_1117487_1117991_+	NA	NA|209aa|up_7|LR134493.1_1118624_1119251_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|323aa|up_6|LR134493.1_1119275_1120244_-	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|179aa|up_5|LR134493.1_1120257_1120794_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|191aa|up_4|LR134493.1_1120819_1121392_-	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold	NA|323aa|up_3|LR134493.1_1121413_1122382_-	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|470aa|up_2|LR134493.1_1122381_1123791_-	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]	NA|117aa|up_1|LR134493.1_1124330_1124681_-	smart00886, Dabb, Stress responsive A/B Barrel Domain	NA|163aa|up_0|LR134493.1_1124847_1125336_+	COG1522, Lrp, Transcriptional regulators [Transcription]	cas6f|185aa|down_0|LR134493.1_1127230_1127785_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|LR134493.1_1127794_1128796_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|310aa|down_2|LR134493.1_1128813_1129743_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|447aa|down_3|LR134493.1_1129739_1131080_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1082aa|down_4|LR134493.1_1131506_1134752_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|down_5|LR134493.1_1134748_1135729_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|98aa|down_6|LR134493.1_1136043_1136337_+	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|168aa|down_7|LR134493.1_1136323_1136827_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|176aa|down_8|LR134493.1_1136820_1137348_-	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|332aa|down_9|LR134493.1_1137593_1138589_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
GCA_900638005.1_53550_B01	LR134493	Serratia rubidaea strain NCTC10036 genome assembly, chromosome: 1	5	1139502-1139713	3,3,5	CRT,PILER-CR,CRISPRCasFinder	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	Type I-F	CGGTTTATCCCCGCTCGCGCGGGGAACAC,CGGTTTATCCCCGCTCGCGCGGGGAACAC,GTTTATCCCCGCTCGCGCGGGGAACAC	29,29,27	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	TypeI-F	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	NA,NA	cas7f|334aa|up_9|LR134493.1_1127794_1128796_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|310aa|up_8|LR134493.1_1128813_1129743_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|447aa|up_7|LR134493.1_1129739_1131080_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1082aa|up_6|LR134493.1_1131506_1134752_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_5|LR134493.1_1134748_1135729_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|98aa|up_4|LR134493.1_1136043_1136337_+	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|168aa|up_3|LR134493.1_1136323_1136827_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|176aa|up_2|LR134493.1_1136820_1137348_-	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|332aa|up_1|LR134493.1_1137593_1138589_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|293aa|up_0|LR134493.1_1138600_1139479_+	PRK15447, PRK15447, putative protease; Provisional	NA|380aa|down_0|LR134493.1_1139907_1141047_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|385aa|down_1|LR134493.1_1141043_1142198_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|324aa|down_2|LR134493.1_1142179_1143151_-	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|338aa|down_3|LR134493.1_1143362_1144376_+	PRK10508, PRK10508, luciferase-like monooxygenase	NA|481aa|down_4|LR134493.1_1144420_1145863_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|289aa|down_5|LR134493.1_1145984_1146851_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|80aa|down_6|LR134493.1_1146873_1147113_-	PRK11018, PRK11018, putative sulfurtransferase YedF	NA|404aa|down_7|LR134493.1_1147112_1148324_-	PRK11099, PRK11099, putative inner membrane protein; Provisional	NA|619aa|down_8|LR134493.1_1148455_1150312_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|295aa|down_9|LR134493.1_1150500_1151385_-	PRK11189, PRK11189, lipoprotein NlpI; Provisional
GCA_900638005.1_53550_B01	LR134493	Serratia rubidaea strain NCTC10036 genome assembly, chromosome: 1	7	3802963-3803171	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no	cas3,DEDDh	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	Unclear	TTTCTAAGCTGCCTGTACGGCAGTGAAC,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAAA	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,3	3	Unclear	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	NA|32aa|up_1|LR134493.1_3801838_3801934_-,NA|80aa|down_0|LR134493.1_3803423_3803663_+,NA|118aa|down_1|LR134493.1_3804066_3804420_+,NA|139aa|down_9|LR134493.1_3810292_3810709_+	NA|174aa|up_9|LR134493.1_3791731_3792253_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|128aa|up_8|LR134493.1_3792666_3793050_+	PRK10301, PRK10301, CopC domain-containing protein YobA	NA|294aa|up_7|LR134493.1_3793053_3793935_+	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|114aa|up_6|LR134493.1_3794003_3794345_+	pfam10709, DUF2511, Protein of unknown function (DUF2511)	NA|364aa|up_5|LR134493.1_3795696_3796788_-	cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD)	NA|568aa|up_4|LR134493.1_3796810_3798514_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|362aa|up_3|LR134493.1_3798557_3799643_-	pfam08933, DUF1864, Domain of unknown function (DUF1864)	NA|533aa|up_2|LR134493.1_3799642_3801241_-	pfam04820, Trp_halogenase, Tryptophan halogenase	NA|32aa|up_1|LR134493.1_3801838_3801934_-	NA	NA|183aa|up_0|LR134493.1_3802173_3802722_-	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|80aa|down_0|LR134493.1_3803423_3803663_+	NA	NA|118aa|down_1|LR134493.1_3804066_3804420_+	NA	NA|125aa|down_2|LR134493.1_3804642_3805017_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|171aa|down_3|LR134493.1_3805186_3805699_+	pfam05823, Gp-FAR-1, Nematode fatty acid retinoid binding protein (Gp-FAR-1)	NA|343aa|down_4|LR134493.1_3805762_3806791_-	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|378aa|down_5|LR134493.1_3807118_3808252_-	PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase; Provisional	NA|107aa|down_6|LR134493.1_3808409_3808730_-	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|223aa|down_7|LR134493.1_3808729_3809398_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|183aa|down_8|LR134493.1_3809500_3810049_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|139aa|down_9|LR134493.1_3810292_3810709_+	NA
GCA_900638005.1_53550_B01	LR134493	Serratia rubidaea strain NCTC10036 genome assembly, chromosome: 1	8	4578258-4578765	5,8,5	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,8,8	8	Orphan	csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,WYL	NA|40aa|up_2|LR134493.1_4575900_4576020_+,NA|56aa|down_2|LR134493.1_4581046_4581214_+,NA|403aa|down_6|LR134493.1_4585518_4586727_-,NA|330aa|down_7|LR134493.1_4586731_4587721_-,NA|70aa|down_9|LR134493.1_4589252_4589462_-	NA|186aa|up_9|LR134493.1_4569373_4569931_+	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR	NA|497aa|up_8|LR134493.1_4569946_4571437_+	PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional	NA|427aa|up_7|LR134493.1_4571448_4572729_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|252aa|up_6|LR134493.1_4572766_4573522_-	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase	NA|142aa|up_5|LR134493.1_4573806_4574232_-	PRK15118, PRK15118, universal stress protein UspA	NA|203aa|up_4|LR134493.1_4574576_4575185_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|83aa|up_3|LR134493.1_4575596_4575845_+	pfam05532, CsbD, CsbD-like	NA|40aa|up_2|LR134493.1_4575900_4576020_+	NA	NA|215aa|up_1|LR134493.1_4576276_4576921_+	COG4340, COG4340, Uncharacterized protein conserved in bacteria [Function unknown]	NA|422aa|up_0|LR134493.1_4576917_4578183_+	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily	NA|97aa|down_0|LR134493.1_4579043_4579334_+	pfam06291, Lambda_Bor, Bor protein	NA|241aa|down_1|LR134493.1_4579405_4580128_-	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases	NA|56aa|down_2|LR134493.1_4581046_4581214_+	NA	NA|356aa|down_3|LR134493.1_4581299_4582367_-	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase	NA|356aa|down_4|LR134493.1_4582363_4583431_-	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase	NA|641aa|down_5|LR134493.1_4583427_4585350_-	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	NA|403aa|down_6|LR134493.1_4585518_4586727_-	NA	NA|330aa|down_7|LR134493.1_4586731_4587721_-	NA	NA|482aa|down_8|LR134493.1_4587742_4589188_-	cd05643, M28_like, M28 Zn-peptidase-like	NA|70aa|down_9|LR134493.1_4589252_4589462_-	NA
