assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900638045.1_55312_G01	LR134491	Streptococcus mutans strain NCTC10920 genome assembly, chromosome: 1	2	1205092-1205258	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGTCAGTCTCCTATTTTCTTCTCGCTTTCTTCACGCCCTTTGTATCTTAAATAA	54	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|572aa|up_9|LR134491.1_1193384_1195100_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|578aa|up_8|LR134491.1_1195217_1196951_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|up_7|LR134491.1_1196947_1198681_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|202aa|up_6|LR134491.1_1198698_1199304_-	pfam13702, Lysozyme_like, Lysozyme-like	NA|326aa|up_5|LR134491.1_1199305_1200283_-	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein	NA|421aa|up_4|LR134491.1_1200279_1201542_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|197aa|up_3|LR134491.1_1201551_1202142_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|277aa|up_2|LR134491.1_1202134_1202965_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|371aa|up_1|LR134491.1_1202964_1204077_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|192aa|up_0|LR134491.1_1204104_1204680_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|62aa|down_0|LR134491.1_1205270_1205456_+	PRK02289, PRK02289, 4-oxalocrotonate tautomerase; Provisional	NA|312aa|down_1|LR134491.1_1205545_1206481_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|201aa|down_2|LR134491.1_1206506_1207109_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|415aa|down_3|LR134491.1_1207130_1208375_+	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|502aa|down_4|LR134491.1_1208552_1210058_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|220aa|down_5|LR134491.1_1210072_1210732_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|507aa|down_6|LR134491.1_1210825_1212346_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|242aa|down_7|LR134491.1_1212342_1213068_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|153aa|down_8|LR134491.1_1213064_1213523_-	TIGR04472, reg_rSAM_mob, mobile rSAM pair MarR family regulator	NA|283aa|down_9|LR134491.1_1213769_1214618_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase
GCA_900638045.1_55312_G01	LR134491	Streptococcus mutans strain NCTC10920 genome assembly, chromosome: 1	3	1380941-1381704	2,2,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,csa3,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Type II-C,Type II-A,Type II-B	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	11,11,8	11	TypeII-C,TypeII-A,TypeII-B	cas3,DEDDh,csa3,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA|223aa|up_6|LR134491.1_1373168_1373837_+,NA|204aa|up_5|LR134491.1_1373890_1374502_-,NA	NA|131aa|up_9|LR134491.1_1370167_1370560_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|348aa|up_8|LR134491.1_1370601_1371645_-	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like	NA|391aa|up_7|LR134491.1_1371871_1373044_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|223aa|up_6|LR134491.1_1373168_1373837_+	NA	NA|204aa|up_5|LR134491.1_1373890_1374502_-	NA	NA|159aa|up_4|LR134491.1_1374583_1375060_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|613aa|up_3|LR134491.1_1375085_1376924_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|596aa|up_2|LR134491.1_1377275_1379063_-	pfam08363, GbpC, Glucan-binding protein C	NA|88aa|up_1|LR134491.1_1379227_1379491_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|298aa|up_0|LR134491.1_1379815_1380709_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|126aa|down_0|LR134491.1_1381859_1382237_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|69aa|down_1|LR134491.1_1382239_1382446_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	csn2|221aa|down_2|LR134491.1_1382544_1383207_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_3|LR134491.1_1383196_1383541_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_4|LR134491.1_1383537_1384407_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1371aa|down_5|LR134491.1_1384406_1388519_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|401aa|down_6|LR134491.1_1388839_1390042_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|186aa|down_7|LR134491.1_1390475_1391033_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|844aa|down_8|LR134491.1_1391156_1393688_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|213aa|down_9|LR134491.1_1394032_1394671_-	COG4478, COG4478, Predicted membrane protein [Function unknown]
GCA_900638045.1_55312_G01	LR134491	Streptococcus mutans strain NCTC10920 genome assembly, chromosome: 1	4	1483083-1483167	3	CRISPRCasFinder	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,csa3,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	ACCCCCGCGTGTGCGGGTAAAAC	23	0	0	NA	NA	I-C,I-E,II-B	1	1	TypeI-E	cas3,DEDDh,csa3,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|327aa|up_9|LR134491.1_1470355_1471336_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|311aa|up_8|LR134491.1_1471338_1472271_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|172aa|up_7|LR134491.1_1472285_1472801_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|142aa|up_6|LR134491.1_1472814_1473240_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|257aa|up_5|LR134491.1_1473499_1474270_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|66aa|up_4|LR134491.1_1474738_1474936_-	PRK05270, PRK05270, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|1211aa|up_3|LR134491.1_1475010_1478643_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1082aa|up_2|LR134491.1_1478632_1481878_-	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|91aa|up_1|LR134491.1_1482467_1482740_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|93aa|up_0|LR134491.1_1482740_1483019_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	DEDDh|301aa|down_0|LR134491.1_1487595_1488498_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|314aa|down_1|LR134491.1_1488499_1489441_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|214aa|down_2|LR134491.1_1489442_1490084_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|down_3|LR134491.1_1490083_1490809_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|358aa|down_4|LR134491.1_1490823_1491897_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|199aa|down_5|LR134491.1_1491886_1492483_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|561aa|down_6|LR134491.1_1492482_1494165_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|922aa|down_7|LR134491.1_1494165_1496931_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|306aa|down_8|LR134491.1_1497159_1498077_+	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|879aa|down_9|LR134491.1_1498480_1501117_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
GCA_900638045.1_55312_G01	LR134491	Streptococcus mutans strain NCTC10920 genome assembly, chromosome: 1	5	1485530-1487572	2,4,3	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,csa3,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	AGGATCACCCCCGCGTGTGCGGGTAAAAC,AGGATCACCCCCGCGTGTGCGGGTAAAAC,AGGATCACCCCCGCGTGTGCGGGTAAAAC	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	33,33,33	33	TypeI-E	cas3,DEDDh,csa3,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|311aa|up_9|LR134491.1_1471338_1472271_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|172aa|up_8|LR134491.1_1472285_1472801_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|142aa|up_7|LR134491.1_1472814_1473240_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|257aa|up_6|LR134491.1_1473499_1474270_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|66aa|up_5|LR134491.1_1474738_1474936_-	PRK05270, PRK05270, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|1211aa|up_4|LR134491.1_1475010_1478643_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1082aa|up_3|LR134491.1_1478632_1481878_-	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|91aa|up_2|LR134491.1_1482467_1482740_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|93aa|up_1|LR134491.1_1482740_1483019_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|788aa|up_0|LR134491.1_1483113_1485477_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	DEDDh|301aa|down_0|LR134491.1_1487595_1488498_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|314aa|down_1|LR134491.1_1488499_1489441_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|214aa|down_2|LR134491.1_1489442_1490084_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|down_3|LR134491.1_1490083_1490809_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|358aa|down_4|LR134491.1_1490823_1491897_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|199aa|down_5|LR134491.1_1491886_1492483_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|561aa|down_6|LR134491.1_1492482_1494165_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|922aa|down_7|LR134491.1_1494165_1496931_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|306aa|down_8|LR134491.1_1497159_1498077_+	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|879aa|down_9|LR134491.1_1498480_1501117_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
